{"id":"https://openalex.org/W4414430081","doi":"https://doi.org/10.48550/arxiv.2508.00654","title":"LEO: An Open-Source Platform for Linking OMERO with Lab Notebooks and Heterogeneous Metadata Sources","display_name":"LEO: An Open-Source Platform for Linking OMERO with Lab Notebooks and Heterogeneous Metadata Sources","publication_year":2025,"publication_date":"2025-08-01","ids":{"openalex":"https://openalex.org/W4414430081","doi":"https://doi.org/10.48550/arxiv.2508.00654"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2508.00654","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2508.00654","pdf_url":"https://arxiv.org/pdf/2508.00654","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2508.00654","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087684353","display_name":"Rodrigo Escobar D\u00edaz Guerrero","orcid":"https://orcid.org/0000-0002-8327-1169"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Guerrero, Rodrigo Escobar D\u00edaz","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Jafari, Jamile Mohammad","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jafari, Jamile Mohammad","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102003582","display_name":"Tobias Meyer\u2010Zedler","orcid":"https://orcid.org/0000-0001-6740-629X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Meyer-Zedler, Tobias","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055566096","display_name":"Michael Schmitt","orcid":"https://orcid.org/0000-0002-3807-3630"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Schmitt, Michael","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Popp, Juergen","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Popp, Juergen","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5034502482","display_name":"Thomas Bocklitz","orcid":"https://orcid.org/0000-0003-2778-6624"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bocklitz, Thomas","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.7993000149726868,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.7993000149726868,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.7491000294685364,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12012","display_name":"Diatoms and Algae Research","score":0.7451000213623047,"subfield":{"id":"https://openalex.org/subfields/2502","display_name":"Biomaterials"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.7839999794960022},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5738999843597412},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5242999792098999},{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.5184999704360962},{"id":"https://openalex.org/keywords/data-mapping","display_name":"Data mapping","score":0.5011000037193298},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.4171999990940094},{"id":"https://openalex.org/keywords/extensibility","display_name":"Extensibility","score":0.41589999198913574},{"id":"https://openalex.org/keywords/data-type","display_name":"Data type","score":0.384799987077713}],"concepts":[{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.7839999794960022},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.669700026512146},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5738999843597412},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5242999792098999},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.5184999704360962},{"id":"https://openalex.org/C137314826","wikidata":"https://www.wikidata.org/wiki/Q2330408","display_name":"Data mapping","level":2,"score":0.5011000037193298},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4447999894618988},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.4171999990940094},{"id":"https://openalex.org/C32833848","wikidata":"https://www.wikidata.org/wiki/Q4115054","display_name":"Extensibility","level":2,"score":0.41589999198913574},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4146000146865845},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3971000015735626},{"id":"https://openalex.org/C138958017","wikidata":"https://www.wikidata.org/wiki/Q190087","display_name":"Data type","level":2,"score":0.384799987077713},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3686999976634979},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.34139999747276306},{"id":"https://openalex.org/C47487241","wikidata":"https://www.wikidata.org/wiki/Q5227230","display_name":"Data access","level":2,"score":0.31790000200271606},{"id":"https://openalex.org/C2985331491","wikidata":"https://www.wikidata.org/wiki/Q5227298","display_name":"Data format","level":2,"score":0.2937000095844269},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.27639999985694885},{"id":"https://openalex.org/C3020038283","wikidata":"https://www.wikidata.org/wiki/Q42848","display_name":"Research data","level":3,"score":0.2741999924182892},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.27140000462532043},{"id":"https://openalex.org/C100463513","wikidata":"https://www.wikidata.org/wiki/Q5227322","display_name":"Data model (GIS)","level":2,"score":0.26570001244544983},{"id":"https://openalex.org/C116409475","wikidata":"https://www.wikidata.org/wiki/Q1385056","display_name":"External Data Representation","level":2,"score":0.26260000467300415},{"id":"https://openalex.org/C67186912","wikidata":"https://www.wikidata.org/wiki/Q367664","display_name":"Data modeling","level":2,"score":0.25839999318122864},{"id":"https://openalex.org/C2779489174","wikidata":"https://www.wikidata.org/wiki/Q6822246","display_name":"Metadata management","level":3,"score":0.25440001487731934}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2508.00654","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2508.00654","pdf_url":"https://arxiv.org/pdf/2508.00654","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"doi:10.48550/arxiv.2508.00654","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2508.00654","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2508.00654","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2508.00654","pdf_url":"https://arxiv.org/pdf/2508.00654","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"In":[0],"the":[1,49,57,140],"interdisciplinary":[2],"field":[3],"of":[4,12,60,76,79,142,159],"microscopy":[5,160],"research,":[6],"managing":[7],"and":[8,29,66,82,107,126,152],"integrating":[9,81],"large":[10],"volumes":[11],"data":[13,46,61,84,112,144],"stored":[14],"across":[15,48],"disparate":[16],"platforms":[17],"remains":[18],"a":[19,73,101,136,150,156],"major":[20],"challenge.":[21],"Data":[22],"types":[23],"such":[24],"as":[25],"bioimages,":[26],"experimental":[27],"records,":[28],"spectral":[30],"information":[31],"are":[32],"often":[33],"maintained":[34],"in":[35],"separate":[36],"repositories,":[37],"each":[38],"following":[39],"different":[40],"management":[41],"standards.":[42],"However,":[43],"linking":[44,83],"these":[45],"sources":[47],"research":[50,161],"lifecycle":[51],"is":[52,72],"essential":[53],"to":[54,105,118],"align":[55],"with":[56,99],"FAIR":[58],"principles":[59],"management:":[62],"Findability,":[63],"Accessibility,":[64],"Interoperability,":[65],"Reusability.":[67],"Despite":[68],"this":[69,90],"need,":[70],"there":[71],"notable":[74],"lack":[75],"tools":[77],"capable":[78],"effectively":[80],"from":[85],"heterogeneous":[86],"sources.":[87,145],"To":[88],"address":[89],"gap,":[91],"we":[92],"present":[93],"LEO":[94,114,149],"(Linking":[95],"Electronic":[96,122],"Lab":[97,123],"Notebooks":[98,124],"OMERO),":[100],"web-based":[102],"platform":[103],"designed":[104],"create":[106],"manage":[108],"links":[109],"between":[110,121],"distributed":[111],"systems.":[113],"was":[115],"initially":[116],"developed":[117],"link":[119],"objects":[120],"(ELNs)":[125],"OMERO,":[127],"but":[128],"its":[129],"functionality":[130],"has":[131],"since":[132],"been":[133],"extended":[134],"through":[135],"plugin-based":[137],"architecture,":[138],"allowing":[139],"integration":[141],"additional":[143],"This":[146],"extensibility":[147],"makes":[148],"scalable":[151],"flexible":[153],"solution":[154],"for":[155],"wide":[157],"range":[158],"workflows.":[162]},"counts_by_year":[{"year":2026,"cited_by_count":2}],"updated_date":"2026-08-05T07:39:15.569665","created_date":"2025-10-10T00:00:00"}
