{"id":"https://openalex.org/W4416834477","doi":"https://doi.org/10.48550/arxiv.2507.13822","title":"RAG-based Architectures for Drug Side Effect Retrieval in LLMs","display_name":"RAG-based Architectures for Drug Side Effect Retrieval in LLMs","publication_year":2025,"publication_date":"2025-07-18","ids":{"openalex":"https://openalex.org/W4416834477","doi":"https://doi.org/10.48550/arxiv.2507.13822"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2507.13822","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2507.13822","pdf_url":"https://arxiv.org/pdf/2507.13822","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2507.13822","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5120440663","display_name":"Shad Nygren","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nygren, Shad","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007911613","display_name":"Pinar Avci","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Avci, Pinar","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Daniels, Andre","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Daniels, Andre","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5120528298","display_name":"Reza Rassol","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rassol, Reza","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077595545","display_name":"Afshin Beheshti","orcid":"https://orcid.org/0000-0003-4643-531X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Beheshti, Afshin","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5080649549","display_name":"Diego Galeano","orcid":"https://orcid.org/0000-0002-1748-7148"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Galeano, Diego","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11943","display_name":"Pharmacovigilance and Adverse Drug Reactions","score":0.6534000039100647,"subfield":{"id":"https://openalex.org/subfields/3005","display_name":"Toxicology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11943","display_name":"Pharmacovigilance and Adverse Drug Reactions","score":0.6534000039100647,"subfield":{"id":"https://openalex.org/subfields/3005","display_name":"Toxicology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.07169999927282333,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.059700001031160355,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/side-effect","display_name":"Side effect (computer science)","score":0.7746000289916992},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.6297000050544739},{"id":"https://openalex.org/keywords/pharmacovigilance","display_name":"Pharmacovigilance","score":0.6128000020980835},{"id":"https://openalex.org/keywords/great-rift","display_name":"Great Rift","score":0.5733000040054321},{"id":"https://openalex.org/keywords/drug-drug-interaction","display_name":"Drug-drug interaction","score":0.43549999594688416},{"id":"https://openalex.org/keywords/reliability","display_name":"Reliability (semiconductor)","score":0.4287000000476837},{"id":"https://openalex.org/keywords/drug-development","display_name":"Drug development","score":0.3871999979019165}],"concepts":[{"id":"https://openalex.org/C3454156","wikidata":"https://www.wikidata.org/wiki/Q1144241","display_name":"Side effect (computer science)","level":2,"score":0.7746000289916992},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.6297000050544739},{"id":"https://openalex.org/C57658597","wikidata":"https://www.wikidata.org/wiki/Q1550789","display_name":"Pharmacovigilance","level":3,"score":0.6128000020980835},{"id":"https://openalex.org/C99394141","wikidata":"https://www.wikidata.org/wiki/Q1085203","display_name":"Great Rift","level":2,"score":0.5733000040054321},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5081999897956848},{"id":"https://openalex.org/C112930515","wikidata":"https://www.wikidata.org/wiki/Q4389547","display_name":"Risk analysis (engineering)","level":1,"score":0.46000000834465027},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.43880000710487366},{"id":"https://openalex.org/C2910466267","wikidata":"https://www.wikidata.org/wiki/Q718753","display_name":"Drug-drug interaction","level":3,"score":0.43549999594688416},{"id":"https://openalex.org/C43214815","wikidata":"https://www.wikidata.org/wiki/Q7310987","display_name":"Reliability (semiconductor)","level":3,"score":0.4287000000476837},{"id":"https://openalex.org/C64903051","wikidata":"https://www.wikidata.org/wiki/Q2198549","display_name":"Drug development","level":3,"score":0.3871999979019165},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.37779998779296875},{"id":"https://openalex.org/C182306322","wikidata":"https://www.wikidata.org/wiki/Q1779371","display_name":"Order (exchange)","level":2,"score":0.37049999833106995},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.36890000104904175},{"id":"https://openalex.org/C49289754","wikidata":"https://www.wikidata.org/wiki/Q2267081","display_name":"Side channel attack","level":3,"score":0.34860000014305115},{"id":"https://openalex.org/C197934379","wikidata":"https://www.wikidata.org/wiki/Q2047938","display_name":"Adverse effect","level":2,"score":0.2858000099658966},{"id":"https://openalex.org/C59491497","wikidata":"https://www.wikidata.org/wiki/Q864715","display_name":"Biosimilar","level":2,"score":0.2815000116825104},{"id":"https://openalex.org/C177713679","wikidata":"https://www.wikidata.org/wiki/Q679690","display_name":"Intensive care medicine","level":1,"score":0.2685000002384186},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.26030001044273376},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.25850000977516174},{"id":"https://openalex.org/C163763905","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision medicine","level":2,"score":0.257999986410141},{"id":"https://openalex.org/C202477664","wikidata":"https://www.wikidata.org/wiki/Q1352449","display_name":"Client-side","level":2,"score":0.2551000118255615}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2507.13822","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2507.13822","pdf_url":"https://arxiv.org/pdf/2507.13822","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"doi:10.48550/arxiv.2507.13822","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2507.13822","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2507.13822","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2507.13822","pdf_url":"https://arxiv.org/pdf/2507.13822","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Drug":[0],"side":[1,69,85,93,106],"effects":[2],"are":[3],"a":[4,73,112,119],"major":[5],"global":[6],"health":[7],"concern,":[8],"necessitating":[9],"advanced":[10],"methods":[11],"for":[12,125],"their":[13,27,45],"accurate":[14,114],"detection":[15],"and":[16,39,63,91,115],"analysis.":[17],"While":[18],"Large":[19],"Language":[20],"Models":[21],"(LLMs)":[22],"offer":[23],"promising":[24],"conversational":[25],"interfaces,":[26],"inherent":[28],"limitations,":[29],"including":[30],"reliance":[31],"on":[32,82],"black-box":[33],"training":[34],"data,":[35],"susceptibility":[36],"to":[37],"hallucinations,":[38],"lack":[40],"of":[41],"domain-specific":[42],"knowledge,":[43],"hinder":[44],"reliability":[46],"in":[47,104,122],"specialized":[48],"fields":[49],"like":[50],"pharmacovigilance.":[51],"To":[52],"address":[53],"this":[54],"gap,":[55],"we":[56],"propose":[57],"two":[58],"architectures:":[59],"Retrieval-Augmented":[60],"Generation":[61],"(RAG)":[62],"GraphRAG,":[64],"which":[65],"integrate":[66],"comprehensive":[67],"drug":[68,84,105],"effect":[70,86,94,107],"knowledge":[71],"into":[72],"Llama":[74],"3":[75],"8B":[76],"language":[77],"model.":[78],"Through":[79],"extensive":[80],"evaluations":[81],"19,520":[83],"associations":[87],"(covering":[88],"976":[89],"drugs":[90],"3,851":[92],"terms),":[95],"our":[96],"results":[97],"demonstrate":[98],"that":[99],"GraphRAG":[100],"achieves":[101],"near-perfect":[102],"accuracy":[103],"retrieval.":[108],"This":[109],"framework":[110],"offers":[111],"highly":[113],"scalable":[116],"solution,":[117],"signifying":[118],"significant":[120],"advancement":[121],"leveraging":[123],"LLMs":[124],"critical":[126],"pharmacovigilance":[127],"applications.":[128]},"counts_by_year":[],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2025-10-10T00:00:00"}
