{"id":"https://openalex.org/W4407186956","doi":"https://doi.org/10.48550/arxiv.2502.02552","title":"Hierarchical Sparse Bayesian Multitask Model with Scalable Inference for Microbiome Analysis","display_name":"Hierarchical Sparse Bayesian Multitask Model with Scalable Inference for Microbiome Analysis","publication_year":2025,"publication_date":"2025-02-04","ids":{"openalex":"https://openalex.org/W4407186956","doi":"https://doi.org/10.48550/arxiv.2502.02552"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2502.02552","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2502.02552","pdf_url":"https://arxiv.org/pdf/2502.02552","source":{"id":"https://openalex.org/S4393918464","display_name":"ArXiv.org","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2502.02552","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101653886","display_name":"Haonan Zhu","orcid":"https://orcid.org/0000-0002-6206-489X"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Zhu, Haonan","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001741874","display_name":"Andr\u00e9 Gon\u00e7alves","orcid":"https://orcid.org/0000-0002-0320-280X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Goncalves, Andre R.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108618193","display_name":"Camilo Valdes","orcid":"https://orcid.org/0009-0001-5860-6035"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Valdes, Camilo","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103820006","display_name":"Hiranmayi Ranganathan","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ranganathan, Hiranmayi","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076486328","display_name":"Boya Zhang","orcid":"https://orcid.org/0000-0003-4837-5584"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhang, Boya","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087748920","display_name":"Jose Manuel Mart\u00ed","orcid":"https://orcid.org/0000-0002-1902-9749"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mart\u00ed, Jose Manuel","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016326778","display_name":"Car Reen Kok","orcid":"https://orcid.org/0009-0001-1131-9784"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kok, Car Reen","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011794989","display_name":"Monica K. Borucki","orcid":"https://orcid.org/0000-0003-2924-2313"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Borucki, Monica K.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012858685","display_name":"Nisha Mulakken","orcid":"https://orcid.org/0000-0003-1727-3024"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mulakken, Nisha J.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011274748","display_name":"James B. Thissen","orcid":"https://orcid.org/0000-0002-4693-5886"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Thissen, James B.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080523855","display_name":"Crystal Jaing","orcid":"https://orcid.org/0000-0001-9933-3005"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jaing, Crystal","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077692655","display_name":"Alfred O. Hero","orcid":"https://orcid.org/0000-0002-2531-9670"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hero, Alfred","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5027113563","display_name":"Nicholas A. Be","orcid":"https://orcid.org/0000-0003-3478-3077"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Be, Nicholas A.","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":13,"corresponding_author_ids":["https://openalex.org/A5101653886"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9283000230789185,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9283000230789185,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6890093684196472},{"id":"https://openalex.org/keywords/bayesian-inference","display_name":"Bayesian inference","score":0.5972030162811279},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5825474262237549},{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.554686963558197},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.5373514890670776},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.4640035033226013},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3824702501296997},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.37393030524253845},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35170501470565796},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.1509605348110199},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1240469217300415}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6890093684196472},{"id":"https://openalex.org/C160234255","wikidata":"https://www.wikidata.org/wiki/Q812535","display_name":"Bayesian inference","level":3,"score":0.5972030162811279},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5825474262237549},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.554686963558197},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.5373514890670776},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.4640035033226013},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3824702501296997},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.37393030524253845},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35170501470565796},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.1509605348110199},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1240469217300415},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2502.02552","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2502.02552","pdf_url":"https://arxiv.org/pdf/2502.02552","source":{"id":"https://openalex.org/S4393918464","display_name":"ArXiv.org","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"doi:10.48550/arxiv.2502.02552","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2502.02552","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2502.02552","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2502.02552","pdf_url":"https://arxiv.org/pdf/2502.02552","source":{"id":"https://openalex.org/S4393918464","display_name":"ArXiv.org","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2372267530","https://openalex.org/W2969189870","https://openalex.org/W3015855446","https://openalex.org/W2965643117","https://openalex.org/W4303857162","https://openalex.org/W2407375987","https://openalex.org/W3049691116","https://openalex.org/W2505726097","https://openalex.org/W2950975704","https://openalex.org/W2010643158"],"abstract_inverted_index":{"This":[0],"paper":[1],"proposes":[2],"a":[3,24,33,80,107],"hierarchical":[4],"Bayesian":[5],"multitask":[6],"learning":[7,18],"model":[8,22],"that":[9,92],"is":[10],"applicable":[11],"to":[12,42],"the":[13,21,44,49,52,93,102,120,123,147,150],"general":[14],"multi-task":[15],"binary":[16],"classification":[17,118],"problem":[19],"where":[20],"assumes":[23],"shared":[25],"sparsity":[26,109],"structure":[27,110],"across":[28,111],"different":[29,112,154],"tasks.":[30,113],"We":[31,47],"derive":[32],"computationally":[34],"efficient":[35],"inference":[36,41],"algorithm":[37],"based":[38,65],"on":[39,55,66,116],"variational":[40],"approximate":[43],"posterior":[45],"distribution.":[46],"demonstrate":[48,119],"potential":[50],"of":[51,122,142,149],"new":[53],"approach":[54,95],"various":[56],"synthetic":[57,89],"datasets":[58,90,152],"and":[59,136],"for":[60],"predicting":[61],"human":[62],"health":[63],"status":[64],"microbiome":[67,76,117],"profile.":[68],"Our":[69,114],"analysis":[70],"incorporates":[71],"data":[72],"pooled":[73,151],"from":[74],"multiple":[75],"studies,":[77],"along":[78],"with":[79,83,133],"comprehensive":[81],"comparison":[82],"other":[84],"benchmark":[85],"methods.":[86],"Results":[87],"in":[88,125,140],"show":[91],"proposed":[94],"has":[96],"superior":[97],"support":[98],"recovery":[99],"property":[100],"when":[101],"underlying":[103],"regression":[104],"coefficients":[105],"share":[106],"common":[108],"experiments":[115],"utility":[121],"method":[124,164],"extracting":[126],"informative":[127],"taxa":[128],"while":[129],"providing":[130],"well-calibrated":[131],"predictions":[132],"uncertainty":[134],"quantification":[135],"achieving":[137],"competitive":[138],"performance":[139],"terms":[141],"prediction":[143],"metrics.":[144],"Notably,":[145],"despite":[146],"heterogeneity":[148],"(e.g.,":[153],"experimental":[155],"objectives,":[156],"laboratory":[157],"setups,":[158],"sequencing":[159],"equipment,":[160],"patient":[161],"demographics),":[162],"our":[163],"delivers":[165],"robust":[166],"results.":[167]},"counts_by_year":[],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
