{"id":"https://openalex.org/W4405767568","doi":"https://doi.org/10.48550/arxiv.2412.17228","title":"MatchMiner-AI: An Open-Source Solution for Cancer Clinical Trial Matching","display_name":"MatchMiner-AI: An Open-Source Solution for Cancer Clinical Trial Matching","publication_year":2024,"publication_date":"2024-12-23","ids":{"openalex":"https://openalex.org/W4405767568","doi":"https://doi.org/10.48550/arxiv.2412.17228"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2412.17228","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2412.17228","pdf_url":"https://arxiv.org/pdf/2412.17228","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2412.17228","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071787046","display_name":"Ethan Cerami","orcid":"https://orcid.org/0009-0009-2340-4490"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Altreuter, Jennifer","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064014382","display_name":"Pavel Trukhanov","orcid":"https://orcid.org/0000-0002-4942-5451"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Trukhanov, Pavel","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102614006","display_name":"Morgan A. Paul","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Paul, Morgan A.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054056965","display_name":"Michael J. Hassett","orcid":"https://orcid.org/0000-0003-0754-3510"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hassett, Michael J.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018306647","display_name":"Irbaz Bin Riaz","orcid":"https://orcid.org/0000-0003-4249-0311"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Riaz, Irbaz B.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064325544","display_name":"James Lindsay","orcid":"https://orcid.org/0000-0002-6295-098X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Afzal, Muhammad Umar","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092122770","display_name":"Emily Mallaber","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mohammed, Arshad A.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084882561","display_name":"Harry Klein","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sammons, Sarah","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032062332","display_name":"Gufran Gungor","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lindsay, James","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051491739","display_name":"Matthew Galvin","orcid":"https://orcid.org/0000-0003-2040-8567"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mallaber, Emily","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075460141","display_name":"Stephen C. Van Nostrand","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Klein, Harry R.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006543894","display_name":"Joyce E. Yu","orcid":"https://orcid.org/0009-0004-1679-894X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gungor, Gufran","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005519554","display_name":"Tali Mazor","orcid":"https://orcid.org/0000-0002-0138-9615"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Galvin, Matthew","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063009872","display_name":"Kenneth L. Kehl","orcid":"https://orcid.org/0000-0001-5339-9797"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Deletto, Michael","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Van Nostrand, Stephen C.","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Van Nostrand, Stephen C.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Provencher, James","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Provencher, James","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Yu, Joyce","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yu, Joyce","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Tahir, Naeem","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tahir, Naeem","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Wischhusen, Jonathan","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wischhusen, Jonathan","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Kozyreva, Olga","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kozyreva, Olga","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Ortiz, Taylor","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ortiz, Taylor","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Tuncer, Hande","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tuncer, Hande","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Masri, Jad El","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Masri, Jad El","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Malcolm, Alys","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Malcolm, Alys","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Mazor, Tali","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mazor, Tali","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Cerami, Ethan","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Cerami, Ethan","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":null,"display_name":"Kehl, Kenneth L.","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kehl, Kenneth L.","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":27,"corresponding_author_ids":["https://openalex.org/A5071787046"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8755999803543091,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8755999803543091,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.8687000274658203,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.8465999960899353,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.7263841032981873},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.6507115960121155},{"id":"https://openalex.org/keywords/open-label","display_name":"Open label","score":0.4792064130306244},{"id":"https://openalex.org/keywords/clinical-trial","display_name":"Clinical trial","score":0.46773654222488403},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.42236316204071045},{"id":"https://openalex.org/keywords/oncology","display_name":"Oncology","score":0.34680330753326416},{"id":"https://openalex.org/keywords/medical-physics","display_name":"Medical physics","score":0.3326014280319214},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.300095796585083},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.27610155940055847},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.20995000004768372},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.16942548751831055},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.10306575894355774},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.06700921058654785}],"concepts":[{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.7263841032981873},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.6507115960121155},{"id":"https://openalex.org/C3019800554","wikidata":"https://www.wikidata.org/wiki/Q3813242","display_name":"Open label","level":3,"score":0.4792064130306244},{"id":"https://openalex.org/C535046627","wikidata":"https://www.wikidata.org/wiki/Q30612","display_name":"Clinical trial","level":2,"score":0.46773654222488403},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.42236316204071045},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.34680330753326416},{"id":"https://openalex.org/C19527891","wikidata":"https://www.wikidata.org/wiki/Q1120908","display_name":"Medical physics","level":1,"score":0.3326014280319214},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.300095796585083},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.27610155940055847},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.20995000004768372},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.16942548751831055},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.10306575894355774},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.06700921058654785}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2412.17228","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2412.17228","pdf_url":"https://arxiv.org/pdf/2412.17228","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"doi:10.48550/arxiv.2412.17228","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2412.17228","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2412.17228","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2412.17228","pdf_url":"https://arxiv.org/pdf/2412.17228","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W1972035260","https://openalex.org/W2124842464","https://openalex.org/W2382657549","https://openalex.org/W4376877853","https://openalex.org/W75565505","https://openalex.org/W4393234404","https://openalex.org/W4301594054","https://openalex.org/W4214847518","https://openalex.org/W2794488505","https://openalex.org/W3120568525"],"abstract_inverted_index":{"Background":[0],"Clinical":[1],"trials":[2,36,152],"are":[3,228],"essential":[4],"to":[5,24,51,109,157,182,209,239],"advancing":[6],"cancer":[7,16],"treatments,":[8],"yet":[9],"fewer":[10],"than":[11],"10%":[12],"of":[13,34,147,174],"adults":[14],"with":[15],"enroll":[17],"in":[18,95],"trials,":[19],"and":[20,65,86,90,214,225],"many":[21],"studies":[22],"fail":[23],"meet":[25],"accrual":[26],"targets.":[27],"Artificial":[28],"intelligence":[29],"(AI)":[30],"could":[31],"improve":[32],"identification":[33],"appropriate":[35],"for":[37,61,100,159,167,184,194],"patients,":[38,145],"but":[39],"sharing":[40],"AI":[41,245],"models":[42],"trained":[43,67],"on":[44,69,124,132],"protected":[45],"health":[46,72],"information":[47],"remains":[48],"difficult":[49],"due":[50],"privacy":[52],"restrictions.":[53],"Methods":[54],"We":[55],"developed":[56],"MatchMiner-AI,":[57],"an":[58,234],"open-source":[59],"platform":[60],"clinical":[62,80,126,242],"trial":[63,91,243],"search":[64],"ranking":[66],"entirely":[68],"synthetic":[70,249],"electronic":[71],"record":[73],"(EHR)":[74],"data.":[75,127,251],"The":[76,120],"system":[77],"extracts":[78],"core":[79],"criteria":[81],"from":[82,247],"longitudinal":[83],"EHR":[84,134,250],"text":[85,107],"embeds":[87],"patient":[88],"summaries":[89],"\"spaces\"":[92],"(target":[93],"populations)":[94],"a":[96,116,241],"shared":[97],"vector":[98],"space":[99,198],"rapid":[101],"retrieval.":[102],"It":[103],"then":[104],"applies":[105],"custom":[106],"classifiers":[108],"assess":[110],"whether":[111],"each":[112],"patient-trial":[113,197],"pairing":[114],"is":[115],"clinically":[117],"reasonable":[118],"consideration.":[119],"pipeline":[121,138,246],"was":[122],"evaluated":[123],"real":[125,133],"Results":[128],"Across":[129],"retrospective":[130],"evaluations":[131],"data,":[135,220],"the":[136,148,160,175],"fine-tuned":[137],"outperformed":[139],"baseline":[140,161],"text-embedding":[141],"approaches.":[142],"For":[143],"trial-enrolled":[144],"90%":[146],"top":[149,176],"20":[150,177],"recommended":[151],"were":[153,165,179],"relevant":[154],"matches":[155,178],"(compared":[156],"17%":[158],"model).":[162],"Similar":[163],"improvements":[164],"noted":[166],"patients":[168],"who":[169],"received":[170],"standard-of-care":[171],"treatments":[172],"(88%":[173],"relevant,":[180],"compared":[181],"14%":[183],"baseline).":[185],"Text":[186],"classification":[187],"modules":[188],"demonstrated":[189],"strong":[190],"discrimination":[191],"(AUROC":[192],"0.94-0.98)":[193],"evaluating":[195],"candidate":[196],"pair":[199],"eligibility;":[200],"incorporating":[201],"these":[202],"components":[203],"consistently":[204],"increased":[205],"mean":[206],"average":[207],"precision":[208],"~":[210],"0.90":[211],"across":[212],"patient-":[213],"trial-centric":[215],"use":[216],"cases.":[217],"Synthetic":[218],"training":[219],"model":[221],"weights,":[222],"inference":[223],"tools,":[224],"demonstration":[226],"frontends":[227],"publicly":[229],"available.":[230],"Conclusions":[231],"MatchMiner-AI":[232],"demonstrates":[233],"openly":[235],"accessible,":[236],"privacy-preserving":[237],"approach":[238],"distilling":[240],"matching":[244],"LLM-generated":[248]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2}],"updated_date":"2026-03-09T08:58:05.943551","created_date":"2024-12-25T00:00:00"}
