{"id":"https://openalex.org/W4405301101","doi":"https://doi.org/10.48550/arxiv.2412.08062","title":"Parsl+CWL: Towards Combining the Python and CWL Ecosystems","display_name":"Parsl+CWL: Towards Combining the Python and CWL Ecosystems","publication_year":2024,"publication_date":"2024-12-11","ids":{"openalex":"https://openalex.org/W4405301101","doi":"https://doi.org/10.48550/arxiv.2412.08062"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2412.08062","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2412.08062","pdf_url":"https://arxiv.org/pdf/2412.08062","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2412.08062","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5115405336","display_name":"Nishchay Karle","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Karle, Nishchay","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084849440","display_name":"Ben Clifford","orcid":"https://orcid.org/0000-0001-6397-7239"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Clifford, Ben","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001788942","display_name":"Yadu Babuji","orcid":"https://orcid.org/0000-0002-9162-6003"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Babuji, Yadu","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088145676","display_name":"Ryan Chard","orcid":"https://orcid.org/0000-0002-6781-7432"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chard, Ryan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061630529","display_name":"Daniel S. Katz","orcid":"https://orcid.org/0000-0001-5934-7525"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Katz, Daniel S.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5065464552","display_name":"Kyle Chard","orcid":"https://orcid.org/0000-0002-7370-4805"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chard, Kyle","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5115405336"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.8434000015258789,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.8434000015258789,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13650","display_name":"Computational Physics and Python Applications","score":0.7771999835968018,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.8672827482223511},{"id":"https://openalex.org/keywords/ecosystem","display_name":"Ecosystem","score":0.4621677100658417},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3609592318534851},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.2725825905799866},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.17744502425193787},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15027767419815063}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.8672827482223511},{"id":"https://openalex.org/C110872660","wikidata":"https://www.wikidata.org/wiki/Q37813","display_name":"Ecosystem","level":2,"score":0.4621677100658417},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3609592318534851},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.2725825905799866},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.17744502425193787},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15027767419815063}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2412.08062","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2412.08062","pdf_url":"https://arxiv.org/pdf/2412.08062","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"doi:10.48550/arxiv.2412.08062","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2412.08062","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2412.08062","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2412.08062","pdf_url":"https://arxiv.org/pdf/2412.08062","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2777053550","display_name":null,"funder_award_id":"AC02-06CH11357","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3585474584","display_name":"Collaborative Research: Sustainability: A Community-Centered Approach for Supporting and Sustaining Parsl","funder_award_id":"2209919","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6558272803","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6848031779","display_name":null,"funder_award_id":"06CH11357","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7351994996","display_name":null,"funder_award_id":"DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8719358336","display_name":"Collaborative Research: Sustainability: A Community-Centered Approach for Supporting and Sustaining Parsl","funder_award_id":"2209920","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4405301101.pdf","grobid_xml":"https://content.openalex.org/works/W4405301101.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2341492732","https://openalex.org/W3187193180","https://openalex.org/W106542691","https://openalex.org/W1699080303","https://openalex.org/W4297799326","https://openalex.org/W3116064965","https://openalex.org/W4287027380"],"abstract_inverted_index":{"The":[0],"Common":[1],"Workflow":[2],"Language":[3],"(CWL)":[4],"is":[5,17,88],"a":[6,42,59,84,92,99,107],"widely":[7],"adopted":[8],"language":[9],"for":[10],"defining":[11],"and":[12,76,142,155],"sharing":[13],"computational":[14],"workflows.":[15],"It":[16],"designed":[18,47],"to":[19,48,73,102],"be":[20,138],"independent":[21],"of":[22,51,90,118,124,145],"the":[23,115,122,152],"execution":[24,50],"engine":[25],"on":[26],"which":[27],"workflows":[28,52],"are":[29],"executed.":[30],"In":[31],"this":[32,125],"paper,":[33],"we":[34],"describe":[35,83,98],"our":[36],"experiences":[37],"integrating":[38],"CWL":[39,64,93,108,130,157],"with":[40],"Parsl,":[41,141],"Python-based":[43],"parallel":[44],"programming":[45],"library":[46],"manage":[49],"across":[53],"diverse":[54],"computing":[55],"environments.":[56],"We":[57,82,96,120],"propose":[58],"new":[60],"method":[61],"that":[62,87,133],"converts":[63],"CommandLineTool":[65,94,131],"definitions":[66,132],"into":[67],"Parsl":[68,71,85,153],"apps,":[69],"enabling":[70,111],"scripts":[72],"easily":[74],"import":[75],"use":[77,113],"tools":[78],"represented":[79],"in":[80,106,114,140],"CWL.":[81],"runner":[86],"capable":[89],"executing":[91,146],"directly.":[95],"also":[97],"proof-of-concept":[100],"extension":[101],"support":[103],"inline":[104],"Python":[105,116],"workflow":[109,150],"definition,":[110],"seamless":[112],"ecosystem":[117],"Parsl.":[119],"demonstrate":[121],"benefits":[123],"integration":[126,154],"by":[127],"presenting":[128],"example":[129],"show":[134],"how":[135],"they":[136],"can":[137],"used":[139],"comparing":[143],"performance":[144],"an":[147],"image":[148],"processing":[149],"using":[151],"other":[156],"runners.":[158]},"counts_by_year":[],"updated_date":"2026-05-20T08:49:12.498775","created_date":"2025-10-10T00:00:00"}