{"id":"https://openalex.org/W4403996037","doi":"https://doi.org/10.48550/arxiv.2410.14612","title":"MultiOrg: A Multi-rater Organoid-detection Dataset","display_name":"MultiOrg: A Multi-rater Organoid-detection Dataset","publication_year":2024,"publication_date":"2024-10-18","ids":{"openalex":"https://openalex.org/W4403996037","doi":"https://doi.org/10.48550/arxiv.2410.14612"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2410.14612","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2410.14612","pdf_url":"https://arxiv.org/pdf/2410.14612","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2410.14612","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000129105","display_name":"Christina Bukas","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Bukas, Christina","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114494472","display_name":"Harshavardhan Subramanian","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Subramanian, Harshavardhan","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108795065","display_name":"Fenja See","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"See, Fenja","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050807747","display_name":"Carina Steinchen","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Steinchen, Carina","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039935645","display_name":"Ivan Ezhov","orcid":"https://orcid.org/0000-0002-0862-6513"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ezhov, Ivan","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5094113787","display_name":"Gowtham Boosarpu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Boosarpu, Gowtham","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049573134","display_name":"Sara Asgharpour","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Asgharpour, Sara","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086970985","display_name":"Gerald Burgstaller","orcid":"https://orcid.org/0000-0002-7121-2567"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Burgstaller, Gerald","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032047330","display_name":"Mareike Lehmann","orcid":"https://orcid.org/0000-0002-8601-8206"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lehmann, Mareike","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104159486","display_name":"Florian Kofler","orcid":"https://orcid.org/0000-0003-0642-7884"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kofler, Florian","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5005966038","display_name":"Marie Piraud","orcid":"https://orcid.org/0000-0002-4917-2458"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Piraud, Marie","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5000129105"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.7278000116348267,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.7278000116348267,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12874","display_name":"Digital Imaging for Blood Diseases","score":0.6992999911308289,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11396","display_name":"Artificial Intelligence in Healthcare","score":0.6661999821662903,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/organoid","display_name":"Organoid","score":0.9041960835456848},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5008220672607422},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.3322259783744812},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2097300887107849},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.16890567541122437}],"concepts":[{"id":"https://openalex.org/C31695470","wikidata":"https://www.wikidata.org/wiki/Q11293125","display_name":"Organoid","level":2,"score":0.9041960835456848},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5008220672607422},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.3322259783744812},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2097300887107849},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.16890567541122437}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2410.14612","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2410.14612","pdf_url":"https://arxiv.org/pdf/2410.14612","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"doi:10.48550/arxiv.2410.14612","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2410.14612","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2410.14612","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2410.14612","pdf_url":"https://arxiv.org/pdf/2410.14612","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W4386439204","https://openalex.org/W4401794395","https://openalex.org/W3033121461","https://openalex.org/W3094248195","https://openalex.org/W2811397904","https://openalex.org/W3047600752","https://openalex.org/W3047590429"],"abstract_inverted_index":{"High-throughput":[0],"image":[1,63,174],"analysis":[2],"in":[3,11,16,46,61,75],"the":[4,42,139,161,172],"biomedical":[5,73],"domain":[6],"has":[7],"gained":[8],"significant":[9],"attention":[10],"recent":[12],"years,":[13],"driving":[14],"advancements":[15],"drug":[17],"discovery,":[18],"disease":[19],"prediction,":[20],"and":[21,38,123,159],"personalized":[22],"medicine.":[23],"Organoids,":[24],"specifically,":[25],"are":[26],"an":[27,51,166],"active":[28],"area":[29],"of":[30,44,71,88,126],"research,":[31],"providing":[32],"excellent":[33],"models":[34],"for":[35,107,138,156,171],"human":[36],"organs":[37],"their":[39],"functions.":[40],"Automating":[41],"quantification":[43,58],"organoids":[45],"microscopy":[47,121],"images":[48,122],"would":[49],"provide":[50,153],"effective":[52],"solution":[53],"to":[54,77,92,178],"overcome":[55],"substantial":[56],"manual":[57],"bottlenecks,":[59],"particularly":[60],"high-throughput":[62],"analysis.":[64],"However,":[65],"there":[66],"is":[67],"a":[68,102,154],"notable":[69],"lack":[70],"open":[72],"datasets,":[74],"contrast":[76],"other":[78],"domains,":[79],"such":[80],"as":[81],"autonomous":[82],"driving,":[83],"and,":[84],"notably,":[85],"only":[86],"few":[87],"them":[89],"have":[90],"attempted":[91],"quantify":[93],"annotation":[94],"uncertainty.":[95],"In":[96],"this":[97],"work,":[98],"we":[99],"present":[100],"MultiOrg":[101],"comprehensive":[103],"organoid":[104,157,180],"dataset":[105,115],"tailored":[106],"object":[108],"detection":[109],"tasks":[110],"with":[111],"uncertainty":[112],"quantification.":[113,181],"This":[114],"comprises":[116],"over":[117],"400":[118],"high-resolution":[119],"2d":[120],"curated":[124],"annotations":[125],"more":[127],"than":[128],"60,000":[129],"organoids.":[130],"Most":[131],"importantly,":[132],"it":[133],"includes":[134],"three":[135],"label":[136],"sets":[137],"test":[140],"data,":[141],"independently":[142],"annotated":[143],"by":[144],"two":[145],"experts":[146],"at":[147],"distinct":[148],"time":[149],"points.":[150],"We":[151],"additionally":[152],"benchmark":[155],"detection,":[158],"make":[160],"best":[162],"model":[163],"available":[164],"through":[165],"easily":[167],"installable,":[168],"interactive":[169],"plugin":[170],"popular":[173],"visualization":[175],"tool":[176],"Napari,":[177],"perform":[179]},"counts_by_year":[],"updated_date":"2026-02-09T09:26:11.010843","created_date":"2025-10-10T00:00:00"}
