{"id":"https://openalex.org/W4403571121","doi":"https://doi.org/10.48550/arxiv.2410.10634","title":"A GPU-accelerated Molecular Docking Workflow with Kubernetes and Apache Airflow","display_name":"A GPU-accelerated Molecular Docking Workflow with Kubernetes and Apache Airflow","publication_year":2024,"publication_date":"2024-10-14","ids":{"openalex":"https://openalex.org/W4403571121","doi":"https://doi.org/10.48550/arxiv.2410.10634"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2410.10634","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2410.10634","pdf_url":"https://arxiv.org/pdf/2410.10634","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2410.10634","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109653807","display_name":"Daniel Medeiros","orcid":"https://orcid.org/0000-0002-1043-5556"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Medeiros, Daniel","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092658397","display_name":"Gabin Schieffer","orcid":"https://orcid.org/0009-0003-6504-7109"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Schieffer, Gabin","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037374138","display_name":"Jacob Wahlgren","orcid":"https://orcid.org/0000-0003-1669-7714"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wahlgren, Jacob","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5037069204","display_name":"Ivy Peng","orcid":"https://orcid.org/0000-0003-4158-3583"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Peng, Ivy","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5109653807"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10101","display_name":"Cloud Computing and Resource Management","score":0.9424999952316284,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9175000190734863,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8065171241760254},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6932117938995361},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.6330740451812744},{"id":"https://openalex.org/keywords/airflow","display_name":"Airflow","score":0.49901628494262695},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.40454259514808655},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.35601866245269775},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09652093052864075},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.06759965419769287}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8065171241760254},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6932117938995361},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.6330740451812744},{"id":"https://openalex.org/C116067010","wikidata":"https://www.wikidata.org/wiki/Q4698686","display_name":"Airflow","level":2,"score":0.49901628494262695},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.40454259514808655},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.35601866245269775},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09652093052864075},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.06759965419769287},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2410.10634","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2410.10634","pdf_url":"https://arxiv.org/pdf/2410.10634","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"doi:10.48550/arxiv.2410.10634","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2410.10634","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2410.10634","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2410.10634","pdf_url":"https://arxiv.org/pdf/2410.10634","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4403571121.pdf","grobid_xml":"https://content.openalex.org/works/W4403571121.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2585268847","https://openalex.org/W2015491755","https://openalex.org/W2018932204","https://openalex.org/W2184016840","https://openalex.org/W2606608188","https://openalex.org/W2381873111","https://openalex.org/W4388698576","https://openalex.org/W2046042224","https://openalex.org/W2078733671","https://openalex.org/W2312591252"],"abstract_inverted_index":{"Complex":[0],"workflows":[1],"play":[2],"a":[3,40,58,70,92,117],"critical":[4],"role":[5],"in":[6,95,116],"accelerating":[7],"scientific":[8,12,21],"discovery.":[9,89],"In":[10],"many":[11],"domains,":[13],"efficient":[14],"workflow":[15,62,107,125],"management":[16],"can":[17,29,126],"lead":[18],"to":[19],"faster":[20],"output":[22],"and":[23,37,48,55,75,98,113],"broader":[24],"user":[25],"groups.":[26],"Workflows":[27],"that":[28,63],"leverage":[30],"resources":[31],"across":[32],"the":[33,44,53,106,109],"boundary":[34],"between":[35],"cloud":[36],"HPC":[38,47,67],"are":[39],"strong":[41],"driver":[42],"for":[43,66,87,101],"convergence":[45],"of":[46,57],"cloud.":[49],"This":[50],"study":[51,80],"investigates":[52],"transition":[54],"deployment":[56],"GPU-accelerated":[59,102],"molecular":[60,84],"docking":[61,85],"was":[64],"designed":[65],"systems":[68],"onto":[69,133],"cloud-native":[71],"environment":[72,119],"with":[73,120],"Kubernetes":[74],"Apache":[76,96],"Airflow.":[77],"The":[78],"case":[79],"focuses":[81],"on":[82],"state-of-of-the-art":[83],"software":[86],"drug":[88],"We":[90,104],"provide":[91],"DAG-based":[93],"implementation":[94],"Airflow":[97],"technical":[99],"details":[100],"deployment.":[103],"evaluated":[105],"using":[108],"SWEETLEAD":[110],"bioinformatics":[111],"dataset":[112],"executed":[114],"it":[115],"Cloud":[118],"heterogeneous":[121],"computing":[122,135],"resources.":[123,136],"Our":[124],"effectively":[127],"overlap":[128],"different":[129,134],"stages":[130],"when":[131],"mapped":[132]},"counts_by_year":[],"updated_date":"2026-03-12T08:34:05.389933","created_date":"2025-10-10T00:00:00"}
