{"id":"https://openalex.org/W4403555404","doi":"https://doi.org/10.48550/arxiv.2409.01931","title":"On the design space between molecular mechanics and machine learning force fields","display_name":"On the design space between molecular mechanics and machine learning force fields","publication_year":2024,"publication_date":"2024-09-03","ids":{"openalex":"https://openalex.org/W4403555404","doi":"https://doi.org/10.48550/arxiv.2409.01931"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2409.01931","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2409.01931","pdf_url":"https://arxiv.org/pdf/2409.01931","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2409.01931","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100321643","display_name":"Yuanqing Wang","orcid":"https://orcid.org/0000-0003-4403-2015"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wang, Yuanqing","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065381656","display_name":"Kenichiro Takaba","orcid":"https://orcid.org/0000-0002-2481-8830"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Takaba, Kenichiro","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034903311","display_name":"Michael S. Chen","orcid":"https://orcid.org/0000-0003-0767-4238"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chen, Michael S.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075536851","display_name":"Marcus Wieder","orcid":"https://orcid.org/0000-0003-2631-8415"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wieder, Marcus","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103223472","display_name":"Yuzhi Xu","orcid":"https://orcid.org/0000-0002-3325-5427"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xu, Yuzhi","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030251392","display_name":"Tong Zhu","orcid":"https://orcid.org/0000-0001-7472-3736"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhu, Tong","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111940891","display_name":"John Z. H. Zhang","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhang, John Z. H.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004386644","display_name":"Arnav Nagle","orcid":"https://orcid.org/0009-0002-6749-4917"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nagle, Arnav","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078267786","display_name":"Yu Kuang","orcid":"https://orcid.org/0000-0001-9451-4640"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yu, Kuang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100410987","display_name":"Xinyan Wang","orcid":"https://orcid.org/0009-0005-0278-0287"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wang, Xinyan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003390204","display_name":"Daniel J. Cole","orcid":"https://orcid.org/0000-0003-2933-0719"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Cole, Daniel J.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021192801","display_name":"Joshua A. Rackers","orcid":"https://orcid.org/0000-0002-8874-018X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rackers, Joshua A.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091175785","display_name":"Kyunghyun Cho","orcid":"https://orcid.org/0000-0003-1669-3211"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Cho, Kyunghyun","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057390025","display_name":"Joe G. Greener","orcid":"https://orcid.org/0000-0002-5154-1929"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Greener, Joe G.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062472542","display_name":"Peter Eastman","orcid":"https://orcid.org/0000-0002-9566-9684"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Eastman, Peter","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003291747","display_name":"Stefano Martiniani","orcid":"https://orcid.org/0000-0003-2028-2175"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Martiniani, Stefano","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5068215051","display_name":"Mark E. Tuckerman","orcid":"https://orcid.org/0000-0003-2194-9955"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tuckerman, Mark E.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9532999992370605,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/molecular-mechanics","display_name":"Molecular mechanics","score":0.6686320304870605},{"id":"https://openalex.org/keywords/space","display_name":"Space (punctuation)","score":0.5985035300254822},{"id":"https://openalex.org/keywords/force-field","display_name":"Force field (fiction)","score":0.4950024485588074},{"id":"https://openalex.org/keywords/classical-mechanics","display_name":"Classical mechanics","score":0.43830451369285583},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3844401240348816},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.34920844435691833},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24875816702842712},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.13780099153518677},{"id":"https://openalex.org/keywords/quantum-mechanics","display_name":"Quantum mechanics","score":0.12368860840797424}],"concepts":[{"id":"https://openalex.org/C25057246","wikidata":"https://www.wikidata.org/wiki/Q1344441","display_name":"Molecular mechanics","level":3,"score":0.6686320304870605},{"id":"https://openalex.org/C2778572836","wikidata":"https://www.wikidata.org/wiki/Q380933","display_name":"Space (punctuation)","level":2,"score":0.5985035300254822},{"id":"https://openalex.org/C10803110","wikidata":"https://www.wikidata.org/wiki/Q1341441","display_name":"Force field (fiction)","level":2,"score":0.4950024485588074},{"id":"https://openalex.org/C74650414","wikidata":"https://www.wikidata.org/wiki/Q11397","display_name":"Classical mechanics","level":1,"score":0.43830451369285583},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3844401240348816},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.34920844435691833},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24875816702842712},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.13780099153518677},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.12368860840797424},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2409.01931","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2409.01931","pdf_url":"https://arxiv.org/pdf/2409.01931","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"doi:10.48550/arxiv.2409.01931","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2409.01931","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2409.01931","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2409.01931","pdf_url":"https://arxiv.org/pdf/2409.01931","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320309468","display_name":"Memorial Sloan-Kettering Cancer Center","ror":"https://ror.org/02yrq0923"},{"id":"https://openalex.org/F4320319918","display_name":"York University","ror":"https://ror.org/05fq50484"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4403555404.pdf","grobid_xml":"https://content.openalex.org/works/W4403555404.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2007369531","https://openalex.org/W1996733108","https://openalex.org/W1988279278","https://openalex.org/W2182607276","https://openalex.org/W2081461182","https://openalex.org/W4294771207","https://openalex.org/W2036866634","https://openalex.org/W2129071110","https://openalex.org/W2019723230","https://openalex.org/W2036754929"],"abstract_inverted_index":{"A":[0],"force":[1,54,177,188,204,214,220],"field":[2,205],"as":[3,5,10,12,84,106,110],"accurate":[4,157,217],"quantum":[6],"mechanics":[7,14],"(QM)":[8],"and":[9,26,75,108,149,175,198,218],"fast":[11],"molecular":[13],"(MM),":[15],"with":[16],"which":[17,132],"one":[18],"can":[19],"simulate":[20],"a":[21,42,58,180],"biomolecular":[22],"system":[23],"efficiently":[24],"enough":[25,28],"meaningfully":[27],"to":[29,46,70,146,211],"get":[30],"quantitative":[31],"insights,":[32],"is":[33,93],"among":[34],"the":[35,87,90,121,128,167,184,195,203,209,225],"most":[36],"ardent":[37],"dreams":[38],"of":[39,85,89,124,151,183,187,190,228],"biophysicists":[40],"--":[41,127,138],"dream,":[43],"nevertheless,":[44],"not":[45],"be":[47],"fulfilled":[48],"any":[49],"time":[50],"soon.":[51],"Machine":[52],"learning":[53],"fields":[55,189,215,221],"(MLFFs)":[56],"represent":[57],"meaningful":[59],"endeavor":[60],"towards":[61],"this":[62,160],"direction,":[63],"where":[64],"differentiable":[65],"neural":[66],"functions":[67],"are":[68,136],"parametrized":[69],"fit":[71],"ab":[72],"initio":[73],"energies,":[74],"furthermore":[76],"forces":[77],"through":[78],"automatic":[79],"differentiation.":[80],"We":[81],"argue":[82],"that,":[83],"now,":[86],"utility":[88],"MLFF":[91,229],"models":[92],"no":[94],"longer":[95],"bottlenecked":[96],"by":[97,101,202],"accuracy":[98,123],"but":[99],"primarily":[100],"their":[102],"speed":[103],"(as":[104],"well":[105],"stability":[107],"generalizability),":[109],"many":[111],"recent":[112],"variants,":[113],"on":[114,166],"limited":[115],"chemical":[116,122,134],"spaces,":[117],"have":[118],"long":[119],"surpassed":[120],"$1$":[125],"kcal/mol":[126],"empirical":[129],"threshold":[130],"beyond":[131],"realistic":[133],"predictions":[135],"possible":[137],"though":[139],"still":[140],"magnitudes":[141],"slower":[142],"than":[143],"MM.":[144],"Hoping":[145],"kindle":[147],"explorations":[148],"designs":[150],"faster,":[152,222],"albeit":[153],"perhaps":[154],"slightly":[155],"less":[156],"MLFFs,":[158],"in":[159],"review,":[161],"we":[162,193],"focus":[163],"our":[164],"attention":[165],"design":[168],"space":[169],"(the":[170],"speed-accuracy":[171],"tradeoff)":[172],"between":[173],"MM":[174,213],"ML":[176,219],"fields.":[178],"After":[179],"brief":[181],"review":[182],"building":[185],"blocks":[186],"either":[191],"kind,":[192],"discuss":[194],"desired":[196],"properties":[197],"challenges":[199],"now":[200],"faced":[201],"development":[206],"community,":[207],"survey":[208],"efforts":[210],"make":[212],"more":[216],"envision":[223],"what":[224],"next":[226],"generation":[227],"might":[230],"look":[231],"like.":[232]},"counts_by_year":[{"year":2025,"cited_by_count":3}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
