{"id":"https://openalex.org/W4403007193","doi":"https://doi.org/10.48550/arxiv.2408.10656","title":"deepmriprep: Voxel-based Morphometry (VBM) Preprocessing via Deep Neural Networks","display_name":"deepmriprep: Voxel-based Morphometry (VBM) Preprocessing via Deep Neural Networks","publication_year":2024,"publication_date":"2024-08-20","ids":{"openalex":"https://openalex.org/W4403007193","doi":"https://doi.org/10.48550/arxiv.2408.10656"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2408.10656","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2408.10656","pdf_url":"https://arxiv.org/pdf/2408.10656","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2408.10656","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007230088","display_name":"L. Fisch","orcid":"https://orcid.org/0000-0001-6424-7676"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Fisch, Lukas","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038716495","display_name":"Nils R. Winter","orcid":"https://orcid.org/0000-0002-6241-1492"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Winter, Nils R.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014561886","display_name":"Janik Goltermann","orcid":"https://orcid.org/0000-0003-3087-1002"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Goltermann, Janik","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077817893","display_name":"Carlotta Barkhau","orcid":"https://orcid.org/0000-0002-7546-9183"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Barkhau, Carlotta","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051242537","display_name":"Daniel Emden","orcid":"https://orcid.org/0000-0001-7459-6634"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Emden, Daniel","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047848421","display_name":"Jan Ernsting","orcid":"https://orcid.org/0000-0003-4649-2111"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ernsting, Jan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107672055","display_name":"Maximilian Konowski","orcid":"https://orcid.org/0009-0009-2790-9330"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Konowski, Maximilian","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035949410","display_name":"Ramona Leenings","orcid":"https://orcid.org/0000-0002-9137-7510"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Leenings, Ramona","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036053555","display_name":"Tiana Borgers","orcid":"https://orcid.org/0000-0003-2309-6079"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Borgers, Tiana","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009483759","display_name":"Kira Flinkenfl\u00fcgel","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Flinkenfl\u00fcgel, Kira","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025392131","display_name":"Dominik Grotegerd","orcid":"https://orcid.org/0000-0001-8718-0128"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Grotegerd, Dominik","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074495019","display_name":"Anna Kraus","orcid":"https://orcid.org/0000-0003-2627-4563"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kraus, Anna","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016928797","display_name":"Elisabeth J. Leehr","orcid":"https://orcid.org/0000-0002-9264-5003"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Leehr, Elisabeth J.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028421369","display_name":"Susanne Meinert","orcid":"https://orcid.org/0000-0003-2177-7161"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Meinert, Susanne","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063092296","display_name":"Frederike Stein","orcid":"https://orcid.org/0000-0002-5052-6022"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Stein, Frederike","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090772042","display_name":"Lea Teutenberg","orcid":"https://orcid.org/0009-0002-7783-8461"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Teutenberg, Lea","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050834304","display_name":"Florian Thomas\u2010Odenthal","orcid":"https://orcid.org/0000-0003-4912-8307"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Thomas-Odenthal, Florian","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066431703","display_name":"Paula Usemann","orcid":"https://orcid.org/0009-0005-4566-0058"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Usemann, Paula","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075742830","display_name":"Marco Hermesdorf","orcid":"https://orcid.org/0000-0003-3541-7212"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hermesdorf, Marco","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037944212","display_name":"Hamidreza Jamalabadi","orcid":"https://orcid.org/0000-0003-2485-2374"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jamalabadi, Hamidreza","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007537656","display_name":"Andreas Jansen","orcid":"https://orcid.org/0000-0002-3140-8207"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jansen, Andreas","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059704237","display_name":"Igor Nenadi\u0107","orcid":"https://orcid.org/0000-0002-0749-7473"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nenadic, Igor","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049225128","display_name":"Benjamin Straube","orcid":"https://orcid.org/0000-0002-9837-0944"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Straube, Benjamin","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049012664","display_name":"Tilo Kircher","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kircher, Tilo","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011477810","display_name":"Klaus Peter Berger","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Berger, Klaus","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003115770","display_name":"Benjamin Risse","orcid":"https://orcid.org/0000-0001-5691-4029"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Risse, Benjamin","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111053894","display_name":"Udo Dannlowski","orcid":"https://orcid.org/0000-0001-7117-2908"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dannlowski, Udo","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5055279410","display_name":"Tim Hahn","orcid":"https://orcid.org/0000-0001-6541-3795"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hahn, Tim","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":28,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T14339","display_name":"Image Processing and 3D Reconstruction","score":0.06480000168085098,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T14339","display_name":"Image Processing and 3D Reconstruction","score":0.06480000168085098,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.061500001698732376,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/voxel-based-morphometry","display_name":"Voxel-based morphometry","score":0.775983452796936},{"id":"https://openalex.org/keywords/voxel","display_name":"Voxel","score":0.7162930369377136},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.6742767095565796},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6474251747131348},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5828697085380554},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5703498125076294},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5108501315116882},{"id":"https://openalex.org/keywords/deep-neural-networks","display_name":"Deep neural networks","score":0.48607972264289856},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.34543490409851074},{"id":"https://openalex.org/keywords/magnetic-resonance-imaging","display_name":"Magnetic resonance imaging","score":0.07359817624092102},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.06071630120277405}],"concepts":[{"id":"https://openalex.org/C200134340","wikidata":"https://www.wikidata.org/wiki/Q845664","display_name":"Voxel-based morphometry","level":4,"score":0.775983452796936},{"id":"https://openalex.org/C54170458","wikidata":"https://www.wikidata.org/wiki/Q663554","display_name":"Voxel","level":2,"score":0.7162930369377136},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.6742767095565796},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6474251747131348},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5828697085380554},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5703498125076294},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5108501315116882},{"id":"https://openalex.org/C2984842247","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep neural networks","level":3,"score":0.48607972264289856},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.34543490409851074},{"id":"https://openalex.org/C143409427","wikidata":"https://www.wikidata.org/wiki/Q161238","display_name":"Magnetic resonance imaging","level":2,"score":0.07359817624092102},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.06071630120277405},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.0},{"id":"https://openalex.org/C2781192897","wikidata":"https://www.wikidata.org/wiki/Q822050","display_name":"White matter","level":3,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2408.10656","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2408.10656","pdf_url":"https://arxiv.org/pdf/2408.10656","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"doi:10.48550/arxiv.2408.10656","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2408.10656","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2408.10656","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2408.10656","pdf_url":"https://arxiv.org/pdf/2408.10656","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1116979012","display_name":null,"funder_award_id":"Dan3/012/17","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G4201431855","display_name":null,"funder_award_id":"01ER0816","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G4266443790","display_name":null,"funder_award_id":"HA7070/2-2","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6335375501","display_name":null,"funder_award_id":"HA7070/3","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G7102021656","display_name":null,"funder_award_id":"01ER1506","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G7442359542","display_name":null,"funder_award_id":"SFB/TRR 393","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8819810260","display_name":null,"funder_award_id":"HA7070/4","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4403007193.pdf"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W3027020613","https://openalex.org/W2016533837","https://openalex.org/W4297910665","https://openalex.org/W2007506293","https://openalex.org/W2735909486","https://openalex.org/W1972685664","https://openalex.org/W4248388699","https://openalex.org/W117090150","https://openalex.org/W2909777330","https://openalex.org/W2770192663"],"abstract_inverted_index":{"Voxel-based":[0],"Morphometry":[1],"(VBM)":[2],"has":[3],"emerged":[4],"as":[5,199],"a":[6,50,200],"powerful":[7],"approach":[8],"in":[9,13,30,94,111,191],"neuroimaging":[10,163,192],"research,":[11],"utilized":[12],"over":[14,120],"7,000":[15],"studies":[16,164],"since":[17],"the":[18,31,72,84,156,167,185],"year":[19],"2000.":[20],"Using":[21],"Magnetic":[22],"Resonance":[23],"Imaging":[24],"(MRI)":[25],"data,":[26],"VBM":[27,61,86,112,159],"assesses":[28],"variations":[29],"local":[32],"density":[33],"of":[34,63,145,150,158],"brain":[35],"tissue":[36,97],"and":[37,43,99,107,127,153,165,183,203],"examines":[38],"its":[39,128],"associations":[40],"with":[41,123],"biological":[42],"psychometric":[44],"variables.":[45],"Here,":[46],"we":[47],"present":[48],"deepmriprep,":[49],"neural":[51,69],"network-based":[52],"pipeline":[53],"that":[54],"performs":[55],"all":[56],"necessary":[57],"preprocessing":[58,87,149],"steps":[59],"for":[60,96],"analysis":[62,160],"T1-weighted":[64],"MR":[65],"images":[66],"using":[67,131],"deep":[68],"networks.":[70],"Utilizing":[71],"Graphics":[73],"Processing":[74],"Unit":[75],"(GPU),":[76],"deepmriprep":[77,118,146,194],"is":[78,204],"37":[79],"times":[80],"faster":[81],"than":[82,104],"CAT12,":[83],"leading":[85],"toolbox.":[88],"The":[89,141],"proposed":[90],"method":[91],"matches":[92],"CAT12":[93],"accuracy":[95],"segmentation":[98,115],"image":[100],"registration":[101],"across":[102],"more":[103],"100":[105],"datasets":[106,152],"shows":[108],"strong":[109],"correlations":[110],"results.":[113],"Tissue":[114],"maps":[116],"from":[117],"have":[119],"95%":[121],"agreement":[122],"ground":[124],"truth":[125],"maps,":[126],"non-linear":[129],"registration,":[130],"supervised":[132],"SYMNet,":[133],"predicts":[134],"smooth":[135],"deformation":[136],"fields":[137],"comparable":[138],"to":[139,161,169,179],"CAT12.":[140],"high":[142],"processing":[143],"speed":[144],"enables":[147,177],"rapid":[148],"extensive":[151],"thereby":[154],"fosters":[155],"application":[157],"large-scale":[162],"opens":[166],"door":[168],"real-time":[170],"applications.":[171],"Finally,":[172],"deepmripreps":[173],"straightforward,":[174],"modular":[175],"design":[176],"researchers":[178],"easily":[180],"understand,":[181],"reuse,":[182],"advance":[184],"underlying":[186],"methods,":[187],"fostering":[188],"further":[189],"advancements":[190],"research.":[193],"can":[195],"be":[196],"conveniently":[197],"installed":[198],"Python":[201],"package":[202],"publicly":[205],"accessible":[206],"at":[207],"https://github.com/wwu-mmll/deepmriprep.":[208]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2024-10-01T00:00:00"}
