{"id":"https://openalex.org/W4402345273","doi":"https://doi.org/10.48550/arxiv.2407.13463","title":"End-To-End Clinical Trial Matching with Large Language Models","display_name":"End-To-End Clinical Trial Matching with Large Language Models","publication_year":2024,"publication_date":"2024-07-18","ids":{"openalex":"https://openalex.org/W4402345273","doi":"https://doi.org/10.48550/arxiv.2407.13463"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2407.13463","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2407.13463","pdf_url":"https://arxiv.org/pdf/2407.13463","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2407.13463","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048917650","display_name":"Dyke Ferber","orcid":"https://orcid.org/0009-0006-6195-9276"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ferber, Dyke","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052655810","display_name":"Lars Hilgers","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hilgers, Lars","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020954920","display_name":"Isabella C. Wiest","orcid":"https://orcid.org/0009-0004-4848-614X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wiest, Isabella C.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007284791","display_name":"Marie-Elisabeth Le\u00dfmann","orcid":"https://orcid.org/0009-0005-7029-0028"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Le\u00dfmann, Marie-Elisabeth","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038711899","display_name":"Jan Clusmann","orcid":"https://orcid.org/0000-0003-2925-8438"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Clusmann, Jan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107077385","display_name":"Peter Neidlinger","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Neidlinger, Peter","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042277520","display_name":"Jiefu Zhu","orcid":"https://orcid.org/0000-0001-9105-022X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhu, Jiefu","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056031179","display_name":"Georg W\u00f6lflein","orcid":"https://orcid.org/0000-0002-0407-7617"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"W\u00f6lflein, Georg","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031142912","display_name":"Jacqueline Lammert","orcid":"https://orcid.org/0000-0002-0380-574X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lammert, Jacqueline","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025827068","display_name":"Maximilian Tschochohei","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tschochohei, Maximilian","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107077383","display_name":"Heiko B\u00f6hme","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"B\u00f6hme, Heiko","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034918056","display_name":"Dirk J\u00e4ger","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"J\u00e4ger, Dirk","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058986790","display_name":"Mihaela Aldea","orcid":"https://orcid.org/0000-0001-7685-051X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Aldea, Mihaela","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016512818","display_name":"Daniel Truhn","orcid":"https://orcid.org/0000-0002-9605-0728"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Truhn, Daniel","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107077384","display_name":"Christiane H\u00f6per","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"H\u00f6per, Christiane","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5073483894","display_name":"Jakob Nikolas Kather","orcid":"https://orcid.org/0000-0002-3730-5348"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kather, Jakob Nikolas","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":16,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11235","display_name":"Statistical Methods in Clinical Trials","score":0.965399980545044,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11235","display_name":"Statistical Methods in Clinical Trials","score":0.965399980545044,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9420999884605408,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.917900025844574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.5398248434066772},{"id":"https://openalex.org/keywords/end-to-end-principle","display_name":"End-to-end principle","score":0.5388486385345459},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.39154452085494995},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21773439645767212},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.17422401905059814},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.15986278653144836}],"concepts":[{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.5398248434066772},{"id":"https://openalex.org/C74296488","wikidata":"https://www.wikidata.org/wiki/Q2527392","display_name":"End-to-end principle","level":2,"score":0.5388486385345459},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.39154452085494995},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21773439645767212},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.17422401905059814},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.15986278653144836}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2407.13463","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2407.13463","pdf_url":"https://arxiv.org/pdf/2407.13463","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},{"id":"doi:10.48550/arxiv.2407.13463","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2407.13463","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2407.13463","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2407.13463","pdf_url":"https://arxiv.org/pdf/2407.13463","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1949475607","display_name":null,"funder_award_id":"NIHR203331","funder_id":"https://openalex.org/F4320336708","funder_display_name":"Leeds Biomedical Research Centre"},{"id":"https://openalex.org/G1966681460","display_name":null,"funder_award_id":"01KD2215A","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G2341156914","display_name":null,"funder_award_id":"01EO2101","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G2654538971","display_name":null,"funder_award_id":"101057091","funder_id":"https://openalex.org/F4320334322","funder_display_name":"HORIZON EUROPE Framework Programme"},{"id":"https://openalex.org/G2669879858","display_name":null,"funder_award_id":"01VSF21048","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G2820917408","display_name":null,"funder_award_id":"01VSF21048","funder_id":"https://openalex.org/F4320328691","funder_display_name":"Gemeinsame Bundesausschuss"},{"id":"https://openalex.org/G3512296018","display_name":null,"funder_award_id":"101096312","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3848825097","display_name":null,"funder_award_id":"70115166","funder_id":"https://openalex.org/F4320323556","funder_display_name":"Deutsche Krebshilfe"},{"id":"https://openalex.org/G4243001891","display_name":"New directions for deep learning in cancer research through concept explainability and virtual experimentation.","funder_award_id":"101114631","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4281281669","display_name":null,"funder_award_id":"R01 CA263318","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G451588841","display_name":null,"funder_award_id":"101057091","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4712284355","display_name":null,"funder_award_id":"57616814","funder_id":"https://openalex.org/F4320320875","funder_display_name":"Deutscher Akademischer Austauschdienst"},{"id":"https://openalex.org/G6098565189","display_name":null,"funder_award_id":"57616814","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G6697820746","display_name":null,"funder_award_id":"NIHR203331","funder_id":"https://openalex.org/F4320319990","funder_display_name":"National Institute for Health and Care Research"},{"id":"https://openalex.org/G8223481575","display_name":null,"funder_award_id":"01KD2215B","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G826797920","display_name":null,"funder_award_id":"01KD2104C","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G8311021456","display_name":null,"funder_award_id":"031L0312A","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320307770","display_name":"AstraZeneca","ror":"https://ror.org/04r9x1a08"},{"id":"https://openalex.org/F4320319990","display_name":"National Institute for Health and Care Research","ror":"https://ror.org/0187kwz08"},{"id":"https://openalex.org/F4320319994","display_name":"Department of Health and Social Care","ror":"https://ror.org/03sbpja79"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320320875","display_name":"Deutscher Akademischer Austauschdienst","ror":"https://ror.org/039djdh30"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320321721","display_name":"Bundesministerium f\u00fcr Gesundheit","ror":"https://ror.org/05vp4ka74"},{"id":"https://openalex.org/F4320323556","display_name":"Deutsche Krebshilfe","ror":"https://ror.org/01wxdd722"},{"id":"https://openalex.org/F4320328691","display_name":"Gemeinsame Bundesausschuss","ror":"https://ror.org/008c2qm47"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334322","display_name":"HORIZON EUROPE Framework Programme","ror":null},{"id":"https://openalex.org/F4320336708","display_name":"Leeds Biomedical Research Centre","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W3179968364","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W1999612375","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"Matching":[0],"cancer":[1],"patients":[2],"to":[3,57,137,170,196],"clinical":[4,53,157],"trials":[5,49,54,91,169],"is":[6,193],"essential":[7],"for":[8,35,156,202],"advancing":[9],"treatment":[10],"and":[11,23,33,73,96,167,192],"patient":[12],"care.":[13],"However,":[14],"the":[15,40,108,175],"inconsistent":[16],"format":[17],"of":[18,76,94,101,142,177],"medical":[19,179],"free":[20],"text":[21],"documents":[22],"complex":[24],"trial":[25,42,158],"eligibility":[26,60],"criteria":[27,124],"make":[28],"this":[29],"process":[30,44],"extremely":[31],"challenging":[32],"time-consuming":[34],"physicians.":[36],"We":[37],"investigated":[38],"whether":[39],"entire":[41],"matching":[43,104,159,168,205],"-":[45,62],"from":[46],"identifying":[47],"relevant":[48,89],"among":[50],"105,600":[51],"oncology-related":[52],"on":[55],"clinicaltrials.gov":[56],"generating":[58],"criterion-level":[59],"matches":[61],"could":[63],"be":[64],"automated":[65],"using":[66,160],"Large":[67],"Language":[68],"Models":[69],"(LLMs).":[70],"Using":[71],"GPT-4o":[72],"a":[74,98,112,138,199],"set":[75],"51":[77],"synthetic":[78],"Electronic":[79],"Health":[80],"Records":[81],"(EHRs),":[82],"we":[83,151],"demonstrate":[84],"that":[85,122,125],"our":[86,146],"approach":[87],"identifies":[88],"candidate":[90],"in":[92,165,206],"93.3%":[93],"cases":[95],"achieves":[97],"preliminary":[99],"accuracy":[100,141],"88.0%":[102],"when":[103],"patient-level":[105],"information":[106],"at":[107],"criterion":[109],"level":[110],"against":[111],"baseline":[113],"defined":[114],"by":[115],"human":[116,147,190],"experts.":[117],"Utilizing":[118],"LLM":[119],"feedback":[120],"reveals":[121],"39.3%":[123],"were":[126],"initially":[127],"considered":[128],"incorrect":[129],"are":[130],"either":[131],"ambiguous":[132],"or":[133,188],"inaccurately":[134],"annotated,":[135],"leading":[136],"total":[139],"model":[140],"92.7%":[143],"after":[144],"refining":[145],"baseline.":[148],"In":[149],"summary,":[150],"present":[152],"an":[153],"end-to-end":[154,183],"pipeline":[155,184],"LLMs,":[161],"demonstrating":[162],"high":[163],"precision":[164],"screening":[166],"individual":[171],"patients,":[172],"even":[173],"outperforming":[174],"performance":[176],"qualified":[178],"doctors.":[180],"Our":[181],"fully":[182],"can":[185],"operate":[186],"autonomously":[187],"with":[189],"supervision":[191],"not":[194],"restricted":[195],"oncology,":[197],"offering":[198],"scalable":[200],"solution":[201],"enhancing":[203],"patient-trial":[204],"real-world":[207],"settings.":[208]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
