{"id":"https://openalex.org/W4400703058","doi":"https://doi.org/10.48550/arxiv.2407.09954","title":"Refining Boolean models with the partial most permissive scheme","display_name":"Refining Boolean models with the partial most permissive scheme","publication_year":2024,"publication_date":"2024-07-13","ids":{"openalex":"https://openalex.org/W4400703058","doi":"https://doi.org/10.48550/arxiv.2407.09954"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2407.09954","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2407.09954","pdf_url":"https://arxiv.org/pdf/2407.09954","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2407.09954","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5104621333","display_name":"Nadine Ben Boina","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Boina, Nadine Ben","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044251825","display_name":"Brigitte Moss\u00e9","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Moss\u00e9, Brigitte","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082003101","display_name":"Ana\u0131\u0308s Baudot","orcid":"https://orcid.org/0000-0003-0885-7933"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Baudot, Ana\u00efs","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5080878366","display_name":"\u00c9lisabeth R\u00e9my","orcid":"https://orcid.org/0000-0001-8560-8178"},"institutions":[{"id":"https://openalex.org/I4210116669","display_name":"Ch\u00e2teau Gombert","ror":"https://ror.org/02kspbq18","country_code":"FR","type":"other","lineage":["https://openalex.org/I4210116669"]},{"id":"https://openalex.org/I4210160189","display_name":"Institut Polytechnique de Bordeaux","ror":"https://ror.org/054qv7y42","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210160189"]},{"id":"https://openalex.org/I4210138206","display_name":"Institut de Math\u00e9matiques de Marseille","ror":"https://ror.org/042h2y225","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210138206","https://openalex.org/I4210141950","https://openalex.org/I4210142724"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Remy, \u00c9lisabeth","raw_affiliation_strings":["I2M - Institut de Math\u00e9matiques de Marseille (Centre de Math\u00e9matiques et Informatique (CMI)\r\nTechnop\u00f4le Ch\u00e2teau-Gombert\r\n39, rue Fr\u00e9d\u00e9ric Joliot Curie\r\n13453 Marseille Cedex 13 - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"I2M - Institut de Math\u00e9matiques de Marseille (Centre de Math\u00e9matiques et Informatique (CMI)\r\nTechnop\u00f4le Ch\u00e2teau-Gombert\r\n39, rue Fr\u00e9d\u00e9ric Joliot Curie\r\n13453 Marseille Cedex 13 - France)","institution_ids":["https://openalex.org/I4210116669","https://openalex.org/I4210160189","https://openalex.org/I4210138206"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5104621333"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9783999919891357,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9728999733924866,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/reachability","display_name":"Reachability","score":0.8341752290725708},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6460453271865845},{"id":"https://openalex.org/keywords/asynchronous-communication","display_name":"Asynchronous communication","score":0.6007898449897766},{"id":"https://openalex.org/keywords/component","display_name":"Component (thermodynamics)","score":0.5574625730514526},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.5461453199386597},{"id":"https://openalex.org/keywords/boolean-network","display_name":"Boolean network","score":0.5458155870437622},{"id":"https://openalex.org/keywords/dynamical-systems-theory","display_name":"Dynamical systems theory","score":0.5057311058044434},{"id":"https://openalex.org/keywords/and-inverter-graph","display_name":"And-inverter graph","score":0.4892299175262451},{"id":"https://openalex.org/keywords/boolean-expression","display_name":"Boolean expression","score":0.4711536169052124},{"id":"https://openalex.org/keywords/boolean-model","display_name":"Boolean model","score":0.4215776324272156},{"id":"https://openalex.org/keywords/boolean-function","display_name":"Boolean function","score":0.4039004445075989},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3078857660293579},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.2752799987792969},{"id":"https://openalex.org/keywords/discrete-mathematics","display_name":"Discrete mathematics","score":0.16111788153648376}],"concepts":[{"id":"https://openalex.org/C136643341","wikidata":"https://www.wikidata.org/wiki/Q1361526","display_name":"Reachability","level":2,"score":0.8341752290725708},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6460453271865845},{"id":"https://openalex.org/C151319957","wikidata":"https://www.wikidata.org/wiki/Q752739","display_name":"Asynchronous communication","level":2,"score":0.6007898449897766},{"id":"https://openalex.org/C168167062","wikidata":"https://www.wikidata.org/wiki/Q1117970","display_name":"Component (thermodynamics)","level":2,"score":0.5574625730514526},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.5461453199386597},{"id":"https://openalex.org/C134444547","wikidata":"https://www.wikidata.org/wiki/Q585230","display_name":"Boolean network","level":3,"score":0.5458155870437622},{"id":"https://openalex.org/C79379906","wikidata":"https://www.wikidata.org/wiki/Q3174497","display_name":"Dynamical systems theory","level":2,"score":0.5057311058044434},{"id":"https://openalex.org/C196836630","wikidata":"https://www.wikidata.org/wiki/Q4753279","display_name":"And-inverter graph","level":4,"score":0.4892299175262451},{"id":"https://openalex.org/C158465420","wikidata":"https://www.wikidata.org/wiki/Q1979515","display_name":"Boolean expression","level":3,"score":0.4711536169052124},{"id":"https://openalex.org/C67499762","wikidata":"https://www.wikidata.org/wiki/Q4943358","display_name":"Boolean model","level":2,"score":0.4215776324272156},{"id":"https://openalex.org/C187455244","wikidata":"https://www.wikidata.org/wiki/Q942353","display_name":"Boolean function","level":2,"score":0.4039004445075989},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3078857660293579},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.2752799987792969},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.16111788153648376},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:arXiv.org:2407.09954","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2407.09954","pdf_url":"https://arxiv.org/pdf/2407.09954","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"pmh:oai:HAL:hal-04799493v1","is_oa":true,"landing_page_url":"https://hal.science/hal-04799493","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"2025","raw_type":"Preprints, Working Papers, ..."},{"id":"doi:10.48550/arxiv.2407.09954","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2407.09954","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2407.09954","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2407.09954","pdf_url":"https://arxiv.org/pdf/2407.09954","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4400703058.pdf"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W1574278709","https://openalex.org/W4243221174","https://openalex.org/W1830204300","https://openalex.org/W3201185782","https://openalex.org/W2995617542","https://openalex.org/W4231391991","https://openalex.org/W2024769762","https://openalex.org/W2952420532","https://openalex.org/W4291608200","https://openalex.org/W1966995004"],"abstract_inverted_index":{"Motivation:":[0],"In":[1],"systems":[2],"biology,":[3],"modelling":[4,18],"strategies":[5],"aim":[6],"to":[7,13,37,55,98,103],"decode":[8],"how":[9],"molecular":[10],"components":[11,32,93],"interact":[12],"generate":[14],"dynamical":[15,40,58],"behaviour.":[16],"Boolean":[17,44,79,96],"is":[19,81,130],"more":[20,22,69],"and":[21,135,141],"used,":[23],"but":[24],"the":[25,28,46,49,92,109,125],"description":[26,47],"of":[27,48,94,145],"dynamics":[29,50],"from":[30],"two-levels":[31],"may":[33,51],"be":[34,52,99],"too":[35,53],"limited":[36,54],"capture":[38,56,104],"certain":[39,57],"properties.":[41,59],"%However,":[42],"in":[43,101,108,124],"models,":[45],"Multivalued":[60],"logical":[61],"models":[62,144],"can":[63],"overcome":[64],"this":[65,113],"limitation":[66],"by":[67,132],"allowing":[68],"than":[70],"two":[71,143],"levels":[72],"for":[73,89],"each":[74],"component.":[75],"However,":[76],"multivaluing":[77],"a":[78,87,95,117,138],"model":[80,97,140],"challenging.":[82],"Results:":[83],"We":[84],"present":[85],"MRBM,":[86],"method":[88],"efficiently":[90],"identifying":[91],"multivalued":[100],"order":[102],"specific":[105],"fixed-point":[106],"reachabilities":[107],"asynchronous":[110],"dynamics.":[111,128],"To":[112],"goal,":[114],"we":[115],"defined":[116],"new":[118],"updating":[119],"scheme":[120],"locating":[121],"reachability":[122],"properties":[123],"most":[126],"permissive":[127],"MRBM":[129],"supported":[131],"mathematical":[133],"demonstrations":[134],"illustrated":[136],"on":[137,142],"toy":[139],"stem":[146],"cell":[147],"differentiation.":[148]},"counts_by_year":[],"updated_date":"2026-05-07T13:39:58.223016","created_date":"2025-10-10T00:00:00"}
