{"id":"https://openalex.org/W4400611172","doi":"https://doi.org/10.48550/arxiv.2407.06508","title":"A Clinical Benchmark of Public Self-Supervised Pathology Foundation Models","display_name":"A Clinical Benchmark of Public Self-Supervised Pathology Foundation Models","publication_year":2024,"publication_date":"2024-07-09","ids":{"openalex":"https://openalex.org/W4400611172","doi":"https://doi.org/10.48550/arxiv.2407.06508"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2407.06508","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2407.06508","pdf_url":"https://arxiv.org/pdf/2407.06508","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2407.06508","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067002655","display_name":"Gabriele Campanella","orcid":"https://orcid.org/0000-0001-6299-1311"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Campanella, Gabriele","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102746372","display_name":"Shengjia Chen","orcid":"https://orcid.org/0000-0003-1556-0679"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chen, Shengjia","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032491679","display_name":"Ruchika Verma","orcid":"https://orcid.org/0000-0003-4870-128X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Verma, Ruchika","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041158202","display_name":"Jennifer Zeng","orcid":"https://orcid.org/0000-0002-6208-855X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zeng, Jennifer","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029991941","display_name":"Aryeh Stock","orcid":"https://orcid.org/0000-0003-1500-5819"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Stock, Aryeh","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114191000","display_name":"Matt Croken","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Croken, Matt","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046568443","display_name":"Brandon Veremis","orcid":"https://orcid.org/0000-0002-3934-9782"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Veremis, Brandon","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035254985","display_name":"Abd\u00fclkadir Elmas","orcid":"https://orcid.org/0000-0002-7999-5770"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Elmas, Abdulkadir","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032718790","display_name":"Kuan\u2010lin Huang","orcid":"https://orcid.org/0000-0002-5537-5817"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Huang, Kuan-lin","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030708624","display_name":"Ricky Kwan","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kwan, Ricky","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052154203","display_name":"Jane Houldsworth","orcid":"https://orcid.org/0000-0002-6781-1700"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Houldsworth, Jane","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010486958","display_name":"Adam J. Schoenfeld","orcid":"https://orcid.org/0000-0002-2644-1416"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Schoenfeld, Adam J.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5089185942","display_name":"Chad Vanderbilt","orcid":"https://orcid.org/0000-0002-8114-0237"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vanderbilt, Chad","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10582","display_name":"Ethics in Clinical Research","score":0.7199000120162964,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10582","display_name":"Ethics in Clinical Research","score":0.7199000120162964,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/foundation","display_name":"Foundation (evidence)","score":0.8106346130371094},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.7253416776657104},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3915131688117981},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3557644188404083},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.33980217576026917},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3374794125556946},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.13242533802986145},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.09224578738212585},{"id":"https://openalex.org/keywords/archaeology","display_name":"Archaeology","score":0.06735903024673462}],"concepts":[{"id":"https://openalex.org/C2780966255","wikidata":"https://www.wikidata.org/wiki/Q5474306","display_name":"Foundation (evidence)","level":2,"score":0.8106346130371094},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.7253416776657104},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3915131688117981},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3557644188404083},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.33980217576026917},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3374794125556946},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.13242533802986145},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.09224578738212585},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.06735903024673462}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:arXiv.org:2407.06508","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2407.06508","pdf_url":"https://arxiv.org/pdf/2407.06508","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-58796-1","is_oa":false,"landing_page_url":"https://www.nature.com/articles/s41467-025-58796-1","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"doi:10.48550/arxiv.2407.06508","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2407.06508","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2407.06508","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2407.06508","pdf_url":"https://arxiv.org/pdf/2407.06508","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3881485945","display_name":null,"funder_award_id":"UL1TR004419","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G6177305277","display_name":null,"funder_award_id":"UL1TR004419","funder_id":"https://openalex.org/F4320316438","funder_display_name":"Georgia Clinical and Translational Science Alliance"}],"funders":[{"id":"https://openalex.org/F4320316438","display_name":"Georgia Clinical and Translational Science Alliance","ror":null},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4400611172.pdf"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W3031052312","https://openalex.org/W4389568370","https://openalex.org/W3032375762","https://openalex.org/W1995515455","https://openalex.org/W2080531066","https://openalex.org/W3108674512","https://openalex.org/W1506200166","https://openalex.org/W1489783725","https://openalex.org/W2148612803"],"abstract_inverted_index":{"The":[0],"use":[1],"of":[2,26,61,65,86,92,108,125,145],"self-supervised":[3],"learning":[4],"(SSL)":[5],"to":[6,78,82,140],"train":[7],"pathology":[8,45,109,147],"foundation":[9,63,148,159],"models":[10,21,64,88,149,160],"has":[11],"increased":[12],"substantially":[13],"in":[14,34,43,59],"the":[15,49,57,84,143],"past":[16],"few":[17],"years.":[18],"Notably,":[19],"several":[20],"trained":[22,68],"on":[23,72,89],"large":[24],"quantities":[25],"clinical":[27,54,112],"data":[28],"have":[29],"been":[30],"made":[31],"publicly":[32],"available":[33],"recent":[35],"months.":[36],"This":[37],"will":[38],"significantly":[39],"enhance":[40],"scientific":[41],"research":[42,52],"computational":[44],"and":[46,53,99,122,150,161],"help":[47],"bridge":[48],"gap":[50],"between":[51],"deployment.":[55],"With":[56],"increase":[58],"availability":[60],"public":[62,146],"different":[66,70,73],"sizes,":[67],"using":[69],"algorithms":[71],"datasets,":[74],"it":[75],"becomes":[76],"important":[77],"establish":[79],"a":[80,90,106,123],"benchmark":[81],"compare":[83],"performance":[85,144],"such":[87],"variety":[91,124],"clinically":[93,116],"relevant":[94,117],"tasks":[95],"spanning":[96],"multiple":[97],"organs":[98],"diseases.":[100],"In":[101],"this":[102],"work,":[103],"we":[104],"present":[105],"collection":[107],"datasets":[110,139],"comprising":[111],"slides":[113],"associated":[114],"with":[115],"endpoints":[118],"including":[119],"cancer":[120],"diagnoses":[121],"biomarkers":[126],"generated":[127],"during":[128],"standard":[129],"hospital":[130],"operation":[131],"from":[132],"two":[133],"medical":[134],"centers.":[135],"We":[136],"leverage":[137],"these":[138],"systematically":[141],"assess":[142],"provide":[151],"insights":[152],"into":[153],"best":[154],"practices":[155],"for":[156],"training":[157],"new":[158],"selecting":[162],"appropriate":[163],"pretrained":[164],"models.":[165]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":2}],"updated_date":"2026-07-01T06:00:48.157686","created_date":"2025-10-10T00:00:00"}
