{"id":"https://openalex.org/W4399598205","doi":"https://doi.org/10.48550/arxiv.2406.07025","title":"Entropy-Reinforced Planning with Large Language Models for Drug Discovery","display_name":"Entropy-Reinforced Planning with Large Language Models for Drug Discovery","publication_year":2024,"publication_date":"2024-06-11","ids":{"openalex":"https://openalex.org/W4399598205","doi":"https://doi.org/10.48550/arxiv.2406.07025"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2406.07025","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2406.07025","pdf_url":"https://arxiv.org/pdf/2406.07025","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2406.07025","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100400563","display_name":"Xuefeng Liu","orcid":"https://orcid.org/0000-0003-2705-8731"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Liu, Xuefeng","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022744987","display_name":"Chih-chan Tien","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tien, Chih-chan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062945675","display_name":"Peng Ding","orcid":"https://orcid.org/0000-0001-7786-8703"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ding, Peng","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080458723","display_name":"Songhao Jiang","orcid":"https://orcid.org/0000-0001-6329-1624"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jiang, Songhao","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5053682943","display_name":"Rick Stevens","orcid":"https://orcid.org/0000-0002-4268-4020"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Stevens, Rick L.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9776999950408936,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9776999950408936,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5869795083999634},{"id":"https://openalex.org/keywords/principle-of-maximum-entropy","display_name":"Principle of maximum entropy","score":0.5759252905845642},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.42116305232048035},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.39129191637039185},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3679848313331604},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3281937837600708}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5869795083999634},{"id":"https://openalex.org/C9679016","wikidata":"https://www.wikidata.org/wiki/Q1417473","display_name":"Principle of maximum entropy","level":2,"score":0.5759252905845642},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.42116305232048035},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.39129191637039185},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3679848313331604},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3281937837600708}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2406.07025","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2406.07025","pdf_url":"https://arxiv.org/pdf/2406.07025","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"doi:10.48550/arxiv.2406.07025","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2406.07025","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2406.07025","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2406.07025","pdf_url":"https://arxiv.org/pdf/2406.07025","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1489425746","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G1527848044","display_name":null,"funder_award_id":"89233218CNA000001","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G1645119126","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1719536385","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G2777053550","display_name":null,"funder_award_id":"AC02-06CH11357","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3232922872","display_name":null,"funder_award_id":"17-SC-20-SC","funder_id":"https://openalex.org/F4320332369","funder_display_name":"National Nuclear Security Administration"},{"id":"https://openalex.org/G3318903820","display_name":null,"funder_award_id":"DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320332369","funder_display_name":"National Nuclear Security Administration"},{"id":"https://openalex.org/G4327825534","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320332369","funder_display_name":"National Nuclear Security Administration"},{"id":"https://openalex.org/G498139845","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G574795485","display_name":null,"funder_award_id":"DE-AC52-07NA27344","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G5783643890","display_name":null,"funder_award_id":"DE-AC02-06-CH11357","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6558272803","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6848031779","display_name":null,"funder_award_id":"06CH11357","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6859237865","display_name":null,"funder_award_id":"17-SC-20-SC","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6918803902","display_name":null,"funder_award_id":"06CH11357","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G6995210142","display_name":null,"funder_award_id":"89233218CNA000001","funder_id":"https://openalex.org/F4320332369","funder_display_name":"National Nuclear Security Administration"},{"id":"https://openalex.org/G7995982022","display_name":null,"funder_award_id":"DE-AC05","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8143874970","display_name":null,"funder_award_id":"AC02-06CH11357","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G8253304997","display_name":null,"funder_award_id":"17-SC-20-SC","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G8269158468","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G8374966015","display_name":null,"funder_award_id":"AC52-07NA27344","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8659807574","display_name":null,"funder_award_id":"89233218CNA000001","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8906985441","display_name":null,"funder_award_id":"00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320332369","display_name":"National Nuclear Security Administration","ror":"https://ror.org/03sk1we31"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4399598205.pdf"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W3107602296","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W4364306694","https://openalex.org/W4312192474","https://openalex.org/W4283697347"],"abstract_inverted_index":{"The":[0],"objective":[1],"of":[2,32,48,71,176],"drug":[3],"discovery":[4],"is":[5,161,197],"to":[6,55,63,91,107,114,171],"identify":[7],"chemical":[8],"compounds":[9],"that":[10,50],"possess":[11],"specific":[12],"pharmaceutical":[13],"properties":[14,112],"toward":[15],"a":[16,56,69,99],"binding":[17],"target.":[18],"Existing":[19],"large":[20],"language":[21],"models":[22,165],"(LLMS)":[23],"can":[24],"achieve":[25,108],"high":[26],"token":[27],"matching":[28],"scores":[29],"in":[30,45,110,139],"terms":[31],"likelihood":[33],"for":[34,82],"molecule":[35],"generation.":[36],"However,":[37],"relying":[38],"solely":[39],"on":[40,123,182],"LLM":[41],"decoding":[42,95],"often":[43],"results":[44],"the":[46,72,93,118,124,145,174,189],"generation":[47,185],"molecules":[49],"are":[51],"either":[52],"invalid":[53],"due":[54,62],"single":[57],"misused":[58],"token,":[59],"or":[60],"suboptimal":[61],"unbalanced":[64],"exploration":[65],"and":[66,97,103,128,136,152,187],"exploitation":[67,102],"as":[68,193],"consequence":[70],"LLMs":[73],"prior":[74],"experience.":[75],"Here":[76],"we":[77,178],"propose":[78],"ERP,":[79,177],"Entropy-Reinforced":[80],"Planning":[81],"Transformer":[83,94,164],"Decoding,":[84],"which":[85],"employs":[86],"an":[87],"entropy-reinforced":[88],"planning":[89],"algorithm":[90,148,181],"enhance":[92],"process":[96],"strike":[98],"balance":[100],"between":[101],"exploration.":[104],"ERP":[105,122,142],"aims":[106],"improvements":[109],"multiple":[111],"compared":[113],"direct":[115],"sampling":[116],"from":[117],"Transformer.":[119],"We":[120],"evaluated":[121],"SARS-CoV-2":[125],"virus":[126],"(3CLPro)":[127],"human":[129],"cancer":[130],"cell":[131],"target":[132],"protein":[133],"(RTCB)":[134],"benchmarks":[135,186],"demonstrated":[137],"that,":[138],"both":[140],"benchmarks,":[141],"consistently":[143],"outperforms":[144],"current":[146,190],"state-of-the-art":[147,191],"by":[149,154],"1-5":[150],"percent,":[151,156],"baselines":[153],"5-10":[155],"respectively.":[157],"Moreover,":[158],"such":[159],"improvement":[160],"robust":[162],"across":[163],"trained":[166],"with":[167],"different":[168],"objectives.":[169],"Finally,":[170],"further":[172],"illustrate":[173],"capabilities":[175],"tested":[179],"our":[180],"three":[183],"code":[184,196],"outperformed":[188],"approach":[192],"well.":[194],"Our":[195],"publicly":[198],"available":[199],"at:":[200],"https://github.com/xuefeng-cs/ERP.":[201]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-06-16T09:24:06.705377","created_date":"2025-10-10T00:00:00"}
