{"id":"https://openalex.org/W4394866529","doi":"https://doi.org/10.48550/arxiv.2404.09425","title":"Super-resolution of biomedical volumes with 2D supervision","display_name":"Super-resolution of biomedical volumes with 2D supervision","publication_year":2024,"publication_date":"2024-04-15","ids":{"openalex":"https://openalex.org/W4394866529","doi":"https://doi.org/10.48550/arxiv.2404.09425"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2404.09425","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2404.09425","pdf_url":"https://arxiv.org/pdf/2404.09425","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2404.09425","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101368938","display_name":"Cheng Jiang","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Jiang, Cheng","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5095740031","display_name":"Alexander Gedeon","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gedeon, Alexander","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082318434","display_name":"Yiwei Lyu","orcid":"https://orcid.org/0000-0002-3882-4246"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lyu, Yiwei","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5095740032","display_name":"Eric Landgraf","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Landgraf, Eric","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100459676","display_name":"Yufeng Zhang","orcid":"https://orcid.org/0000-0001-8702-5291"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhang, Yufeng","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036316753","display_name":"Xinhai Hou","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hou, Xinhai","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004551167","display_name":"Akhil Kondepudi","orcid":"https://orcid.org/0000-0002-2643-7580"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kondepudi, Akhil","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076236138","display_name":"Asadur Chowdury","orcid":"https://orcid.org/0000-0002-5653-9721"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chowdury, Asadur","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108652283","display_name":"Honglak Lee","orcid":"https://orcid.org/0000-0002-1279-0068"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lee, Honglak","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5056536623","display_name":"Todd Hollon","orcid":"https://orcid.org/0000-0001-5987-6531"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hollon, Todd","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5101368938"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11324","display_name":"Spectroscopy Techniques in Biomedical and Chemical Research","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.6428568959236145},{"id":"https://openalex.org/keywords/resolution","display_name":"Resolution (logic)","score":0.5769626498222351},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5679541826248169},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5309229493141174},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.5182783007621765},{"id":"https://openalex.org/keywords/orientation","display_name":"Orientation (vector space)","score":0.5040687322616577},{"id":"https://openalex.org/keywords/image-resolution","display_name":"Image resolution","score":0.47107023000717163},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.4540298283100128},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.43956267833709717},{"id":"https://openalex.org/keywords/modality","display_name":"Modality (human\u2013computer interaction)","score":0.4257054924964905},{"id":"https://openalex.org/keywords/biomedical-engineering","display_name":"Biomedical engineering","score":0.4237824082374573},{"id":"https://openalex.org/keywords/high-resolution","display_name":"High resolution","score":0.4166374206542969},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.3427637815475464},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.25085920095443726},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.16529342532157898},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.12038516998291016},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11280468106269836},{"id":"https://openalex.org/keywords/remote-sensing","display_name":"Remote sensing","score":0.08816814422607422}],"concepts":[{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.6428568959236145},{"id":"https://openalex.org/C138268822","wikidata":"https://www.wikidata.org/wiki/Q1051925","display_name":"Resolution (logic)","level":2,"score":0.5769626498222351},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5679541826248169},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5309229493141174},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.5182783007621765},{"id":"https://openalex.org/C16345878","wikidata":"https://www.wikidata.org/wiki/Q107472979","display_name":"Orientation (vector space)","level":2,"score":0.5040687322616577},{"id":"https://openalex.org/C205372480","wikidata":"https://www.wikidata.org/wiki/Q210521","display_name":"Image resolution","level":2,"score":0.47107023000717163},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.4540298283100128},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.43956267833709717},{"id":"https://openalex.org/C2780226545","wikidata":"https://www.wikidata.org/wiki/Q6888030","display_name":"Modality (human\u2013computer interaction)","level":2,"score":0.4257054924964905},{"id":"https://openalex.org/C136229726","wikidata":"https://www.wikidata.org/wiki/Q327092","display_name":"Biomedical engineering","level":1,"score":0.4237824082374573},{"id":"https://openalex.org/C3020199158","wikidata":"https://www.wikidata.org/wiki/Q210521","display_name":"High resolution","level":2,"score":0.4166374206542969},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.3427637815475464},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.25085920095443726},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.16529342532157898},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.12038516998291016},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11280468106269836},{"id":"https://openalex.org/C62649853","wikidata":"https://www.wikidata.org/wiki/Q199687","display_name":"Remote sensing","level":1,"score":0.08816814422607422},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2404.09425","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2404.09425","pdf_url":"https://arxiv.org/pdf/2404.09425","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"doi:10.48550/arxiv.2404.09425","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2404.09425","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2404.09425","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2404.09425","pdf_url":"https://arxiv.org/pdf/2404.09425","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4394866529.pdf"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2385859805","https://openalex.org/W2530972254","https://openalex.org/W2374013449","https://openalex.org/W73545470","https://openalex.org/W2364381299","https://openalex.org/W2374430585","https://openalex.org/W3144423903","https://openalex.org/W2377397762","https://openalex.org/W2793967660","https://openalex.org/W2361654993"],"abstract_inverted_index":{"Volumetric":[0],"biomedical":[1,212],"microscopy":[2,36,63,207],"has":[3],"the":[4,8,18,58,75,79,113,121,187,201],"potential":[5],"to":[6,31,105,108,125],"increase":[7],"diagnostic":[9,19],"information":[10],"extracted":[11],"from":[12,100],"clinical":[13,38,209],"tissue":[14],"specimens":[15],"and":[16,25,49,138,152,167,189,211],"improve":[17],"accuracy":[20],"of":[21,53,60,86,123,146,191,204],"both":[22],"human":[23],"pathologists":[24],"computational":[26],"pathology":[27],"models.":[28],"Unfortunately,":[29],"barriers":[30],"integrating":[32],"3-dimensional":[33],"(3D)":[34],"volumetric":[35,55,193,206],"into":[37],"medicine":[39],"include":[40],"long":[41],"imaging":[42,132],"times,":[43],"poor":[44],"depth":[45],"/":[46],"z-axis":[47],"resolution,":[48],"an":[50,130],"insufficient":[51],"amount":[52],"high-quality":[54],"data.":[56],"Leveraging":[57],"abundance":[59],"high-resolution":[61,98,147],"2D":[62,148],"data,":[64,194],"we":[65,160],"introduce":[66,161],"masked":[67],"slice":[68],"diffusion":[69],"for":[70,93,134],"super-resolution":[71,94],"(MSDSR),":[72],"which":[73],"exploits":[74],"inherent":[76],"equivalence":[77],"in":[78,208],"data-generating":[80],"distribution":[81],"across":[82],"all":[83],"spatial":[84],"dimensions":[85],"biological":[87,135],"specimens.":[88],"This":[89],"intrinsic":[90],"characteristic":[91],"allows":[92],"models":[95,174],"trained":[96],"on":[97,116,120],"images":[99,149],"one":[101],"plane":[102],"(e.g.,":[103],"XY)":[104],"effectively":[106],"generalize":[107],"others":[109],"(XZ,":[110],"YZ),":[111],"overcoming":[112],"traditional":[114],"dependency":[115],"orientation.":[117],"We":[118],"focus":[119],"application":[122,203],"MSDSR":[124,182],"stimulated":[126],"Raman":[127],"histology":[128],"(SRH),":[129],"optical":[131,154],"modality":[133],"specimen":[136],"analysis":[137],"intraoperative":[139],"diagnosis,":[140],"characterized":[141],"by":[142],"its":[143],"rapid":[144],"acquisition":[145],"but":[150,195],"slow":[151],"costly":[153],"z-sectioning.":[155],"To":[156],"evaluate":[157],"MSDSR's":[158,169],"efficacy,":[159],"a":[162],"new":[163],"performance":[164,171],"metric,":[165],"SliceFID,":[166],"demonstrate":[168],"superior":[170],"over":[172],"baseline":[173],"through":[175],"extensive":[176],"evaluations.":[177],"Our":[178],"findings":[179],"reveal":[180],"that":[181],"not":[183],"only":[184],"significantly":[185],"enhances":[186],"quality":[188],"resolution":[190],"3D":[192,205],"also":[196],"addresses":[197],"major":[198],"obstacles":[199],"hindering":[200],"broader":[202],"diagnostics":[210],"research.":[213]},"counts_by_year":[],"updated_date":"2026-02-09T09:26:11.010843","created_date":"2025-10-10T00:00:00"}
