{"id":"https://openalex.org/W4393336005","doi":"https://doi.org/10.48550/arxiv.2403.19394","title":"Cycling on the Freeway: The Perilous State of Open Source Neuroscience Software","display_name":"Cycling on the Freeway: The Perilous State of Open Source Neuroscience Software","publication_year":2024,"publication_date":"2024-03-28","ids":{"openalex":"https://openalex.org/W4393336005","doi":"https://doi.org/10.48550/arxiv.2403.19394"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2403.19394","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2403.19394","pdf_url":"https://arxiv.org/pdf/2403.19394","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2403.19394","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013608528","display_name":"Britta U. Westner","orcid":"https://orcid.org/0000-0003-3231-1076"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Westner, Britta U.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039786603","display_name":"Daniel McCloy","orcid":"https://orcid.org/0000-0002-7572-3241"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"McCloy, Daniel R.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005343881","display_name":"Eric D. Larson","orcid":"https://orcid.org/0000-0002-2881-4861"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Larson, Eric","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018256474","display_name":"Alexandre Gramfort","orcid":"https://orcid.org/0000-0001-9791-4404"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gramfort, Alexandre","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061630529","display_name":"Daniel S. Katz","orcid":"https://orcid.org/0000-0001-5934-7525"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Katz, Daniel S.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046272347","display_name":"Arfon M. Smith","orcid":"https://orcid.org/0000-0002-3957-2474"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Smith, Arfon M.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5094282799","display_name":"invited co-signees","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"co-signees, invited","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5013608528"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T14393","display_name":"Health, Environment, Cognitive Aging","score":0.5432000160217285,"subfield":{"id":"https://openalex.org/subfields/2307","display_name":"Health, Toxicology and Mutagenesis"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T14393","display_name":"Health, Environment, Cognitive Aging","score":0.5432000160217285,"subfield":{"id":"https://openalex.org/subfields/2307","display_name":"Health, Toxicology and Mutagenesis"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.4959000051021576,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12026","display_name":"Explainable Artificial Intelligence (XAI)","score":0.4706999957561493,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.6298904418945312},{"id":"https://openalex.org/keywords/state","display_name":"State (computer science)","score":0.5875974297523499},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5122475028038025},{"id":"https://openalex.org/keywords/open-source-software","display_name":"Open source software","score":0.4797435998916626},{"id":"https://openalex.org/keywords/cycling","display_name":"Cycling","score":0.4137195646762848},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.4097297489643097},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3707587718963623},{"id":"https://openalex.org/keywords/cognitive-science","display_name":"Cognitive science","score":0.3436709940433502},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3229013681411743},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.2566128969192505},{"id":"https://openalex.org/keywords/history","display_name":"History","score":0.21701940894126892},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.12672320008277893},{"id":"https://openalex.org/keywords/archaeology","display_name":"Archaeology","score":0.09614446759223938}],"concepts":[{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.6298904418945312},{"id":"https://openalex.org/C48103436","wikidata":"https://www.wikidata.org/wiki/Q599031","display_name":"State (computer science)","level":2,"score":0.5875974297523499},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5122475028038025},{"id":"https://openalex.org/C2988343187","wikidata":"https://www.wikidata.org/wiki/Q1130645","display_name":"Open source software","level":3,"score":0.4797435998916626},{"id":"https://openalex.org/C541528975","wikidata":"https://www.wikidata.org/wiki/Q53121","display_name":"Cycling","level":2,"score":0.4137195646762848},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.4097297489643097},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3707587718963623},{"id":"https://openalex.org/C188147891","wikidata":"https://www.wikidata.org/wiki/Q147638","display_name":"Cognitive science","level":1,"score":0.3436709940433502},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3229013681411743},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.2566128969192505},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.21701940894126892},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.12672320008277893},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.09614446759223938},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2403.19394","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2403.19394","pdf_url":"https://arxiv.org/pdf/2403.19394","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},{"id":"doi:10.48550/arxiv.2403.19394","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2403.19394","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2403.19394","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2403.19394","pdf_url":"https://arxiv.org/pdf/2403.19394","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306192","display_name":"Silicon Valley Community Foundation","ror":"https://ror.org/001ader08"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4376877853","https://openalex.org/W1493891899","https://openalex.org/W4250928611","https://openalex.org/W166480398","https://openalex.org/W167327709","https://openalex.org/W1977393088","https://openalex.org/W4387839566","https://openalex.org/W4210922265","https://openalex.org/W2491403535","https://openalex.org/W2328580451"],"abstract_inverted_index":{"Most":[0],"scientists":[1,121],"need":[2],"software":[3,47,84,124,168,190],"to":[4,48,61,180,183,192],"perform":[5],"their":[6,144],"research":[7],"(Barker":[8],"et":[9,13,19,91,105],"al.,":[10,14,20,92,106],"2020;":[11],"Carver":[12],"2022;":[15],"Hettrick,":[16],"2014;":[17,21],"Hettrick":[18],"Switters":[22],"and":[23,26,51,108,150,171,174],"Osimo,":[24],"2019),":[25,93],"neuroscientists":[27],"are":[28,147],"no":[29],"exception.":[30],"Whether":[31],"we":[32,44,57,66,157],"work":[33,67],"with":[34,68,96],"reaction":[35],"times,":[36],"electrophysiological":[37],"signals,":[38],"or":[39,60],"magnetic":[40],"resonance":[41],"imaging":[42],"data,":[43],"rely":[45],"on":[46,80,148],"acquire,":[49],"analyze,":[50],"statistically":[52],"evaluate":[53],"the":[54,97,133,136,161,176,193],"raw":[55],"data":[56,64,88],"obtain":[58],"-":[59],"generate":[62],"such":[63],"if":[65],"simulations.":[69],"In":[70,154],"recent":[71],"years":[72],"there":[73],"has":[74],"been":[75],"a":[76,129,185],"shift":[77],"toward":[78],"relying":[79],"free,":[81],"open-source":[82],"scientific":[83],"(FOSSS)":[85],"for":[86],"neuroscience":[87,177],"analysis":[89],"(Poldrack":[90],"in":[94,102,143],"line":[95],"broader":[98],"open":[99,166],"science":[100],"movement":[101],"academia":[103],"(McKiernan":[104],"2016)":[107],"wider":[109],"industry":[110],"trends":[111],"(Eghbal,":[112],"2016).":[113],"Importantly,":[114],"FOSSS":[115],"is":[116,169],"typically":[117],"developed":[118],"by":[119],"working":[120],"(not":[122],"professional":[123],"developers)":[125],"which":[126],"sets":[127],"up":[128],"precarious":[130],"situation":[131],"given":[132],"nature":[134],"of":[135,164,188,195],"typical":[137],"academic":[138],"workplace":[139],"(wherein":[140],"academics,":[141],"especially":[142],"early":[145],"careers,":[146],"short":[149],"fixed":[151],"term":[152],"contracts).":[153],"this":[155],"paper,":[156],"will":[158],"argue":[159],"that":[160],"existing":[162],"ecosystem":[163],"neuroscientific":[165],"source":[167],"brittle,":[170],"discuss":[172],"why":[173],"how":[175],"community":[178],"needs":[179],"come":[181],"together":[182],"ensure":[184],"healthy":[186],"growth":[187],"our":[189],"landscape":[191],"benefit":[194],"all.":[196]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2024-03-30T00:00:00"}
