{"id":"https://openalex.org/W4391871493","doi":"https://doi.org/10.48550/arxiv.2402.09330","title":"3D-based RNA function prediction tools in rnaglib","display_name":"3D-based RNA function prediction tools in rnaglib","publication_year":2024,"publication_date":"2024-02-14","ids":{"openalex":"https://openalex.org/W4391871493","doi":"https://doi.org/10.48550/arxiv.2402.09330"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2402.09330","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2402.09330","pdf_url":"https://arxiv.org/pdf/2402.09330","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2402.09330","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003324363","display_name":"Carlos Oliver","orcid":"https://orcid.org/0000-0001-8742-8795"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Oliver, Carlos","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103104178","display_name":"Vincent Mallet","orcid":"https://orcid.org/0000-0003-4664-754X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mallet, Vincent","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5000881484","display_name":"J\u00e9r\u00f4me Waldisp\u00fchl","orcid":"https://orcid.org/0000-0002-2561-7117"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Waldisp\u00fchl, J\u00e9r\u00f4me","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5003324363"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13779","display_name":"Cancer Mechanisms and Therapy","score":0.8282999992370605,"subfield":{"id":"https://openalex.org/subfields/2734","display_name":"Pathology and Forensic Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T13779","display_name":"Cancer Mechanisms and Therapy","score":0.8282999992370605,"subfield":{"id":"https://openalex.org/subfields/2734","display_name":"Pathology and Forensic Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10952","display_name":"PI3K/AKT/mTOR signaling in cancer","score":0.7792999744415283,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11247","display_name":"Plant nutrient uptake and metabolism","score":0.7120000123977661,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5652560591697693},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4429381489753723},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41472476720809937},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19738781452178955},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.10530158877372742}],"concepts":[{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5652560591697693},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4429381489753723},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41472476720809937},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19738781452178955},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.10530158877372742}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2402.09330","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2402.09330","pdf_url":"https://arxiv.org/pdf/2402.09330","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"doi:10.48550/arxiv.2402.09330","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2402.09330","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2402.09330","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2402.09330","pdf_url":"https://arxiv.org/pdf/2402.09330","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4391871493.pdf","grobid_xml":"https://content.openalex.org/works/W4391871493.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"Understanding":[0],"the":[1,45],"connection":[2],"between":[3],"complex":[4],"structural":[5],"features":[6],"of":[7,26,47,61],"RNA":[8,21,27,62],"and":[9,19,30,37,52],"biological":[10],"function":[11,56],"is":[12],"a":[13],"fundamental":[14],"challenge":[15],"in":[16,20],"evolutionary":[17],"studies":[18],"design.":[22],"However,":[23],"building":[24],"datasets":[25,60],"3D":[28,63],"structures":[29],"making":[31],"appropriate":[32],"modeling":[33],"choices":[34],"remains":[35],"time-consuming":[36],"lacks":[38],"standardization.":[39],"In":[40],"this":[41],"chapter,":[42],"we":[43],"describe":[44],"use":[46],"rnaglib,":[48],"to":[49],"train":[50],"supervised":[51],"unsupervised":[53],"machine":[54],"learning-based":[55],"prediction":[57],"models":[58],"on":[59],"structures.":[64]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
