{"id":"https://openalex.org/W4391555703","doi":"https://doi.org/10.48550/arxiv.2402.01031","title":"MRAnnotator: multi-Anatomy and many-Sequence MRI segmentation of 44 structures","display_name":"MRAnnotator: multi-Anatomy and many-Sequence MRI segmentation of 44 structures","publication_year":2024,"publication_date":"2024-02-01","ids":{"openalex":"https://openalex.org/W4391555703","doi":"https://doi.org/10.48550/arxiv.2402.01031"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2402.01031","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2402.01031","pdf_url":"https://arxiv.org/pdf/2402.01031","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2402.01031","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101466159","display_name":"Alexander Zhou","orcid":"https://orcid.org/0009-0007-1292-2765"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhou, Alexander","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115883317","display_name":"Zelong Liu","orcid":"https://orcid.org/0000-0001-6968-6467"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Liu, Zelong","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104239641","display_name":"Andrew Tieu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tieu, Andrew","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080952448","display_name":"Nikhil Patel","orcid":"https://orcid.org/0000-0001-6221-3843"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Patel, Nikhil","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102915396","display_name":"Sean Sun","orcid":"https://orcid.org/0009-0000-3589-3708"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sun, Sean","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061825586","display_name":"Anthony Yang","orcid":"https://orcid.org/0000-0002-5415-297X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yang, Anthony","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111735657","display_name":"P. Choi","orcid":"https://orcid.org/0000-0002-8028-8846"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Choi, Peter","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Lee, Hao-Chih","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lee, Hao-Chih","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Tordjman, Mickael","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tordjman, Mickael","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Deyer, Louisa","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Deyer, Louisa","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Mei, Yunhao","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mei, Yunhao","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053936728","display_name":"Valentin Fauveau","orcid":"https://orcid.org/0000-0002-5942-0013"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Fauveau, Valentin","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Soultanidis, George","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Soultanidis, George","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Taouli, Bachir","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Taouli, Bachir","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091438230","display_name":"Mingqian Huang","orcid":"https://orcid.org/0000-0002-5734-0191"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Huang, Mingqian","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040302301","display_name":"Amish Doshi","orcid":"https://orcid.org/0000-0002-2507-436X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Doshi, Amish","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089434484","display_name":"Zahi A. Fayad","orcid":"https://orcid.org/0000-0002-3439-7347"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Fayad, Zahi A.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088913217","display_name":"Timothy Deyer","orcid":"https://orcid.org/0000-0001-5606-7106"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Deyer, Timothy","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5079389528","display_name":"Xueyan Mei","orcid":"https://orcid.org/0000-0001-7224-7318"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mei, Xueyan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9577999711036682,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9577999711036682,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12702","display_name":"Brain Tumor Detection and Classification","score":0.9379000067710876,"subfield":{"id":"https://openalex.org/subfields/2808","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10036","display_name":"Advanced Neural Network Applications","score":0.9193000197410583,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.6808242797851562},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.6244051456451416},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5822393894195557},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.5210201740264893},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5057244300842285},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.36140504479408264},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2859879434108734}],"concepts":[{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.6808242797851562},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.6244051456451416},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5822393894195557},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.5210201740264893},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5057244300842285},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.36140504479408264},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2859879434108734}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2402.01031","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2402.01031","pdf_url":"https://arxiv.org/pdf/2402.01031","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"doi:10.48550/arxiv.2402.01031","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2402.01031","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2402.01031","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2402.01031","pdf_url":"https://arxiv.org/pdf/2402.01031","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4391555703.pdf","grobid_xml":"https://content.openalex.org/works/W4391555703.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2731899572","https://openalex.org/W3215138031","https://openalex.org/W2755342338","https://openalex.org/W2058170566","https://openalex.org/W2036807459","https://openalex.org/W2775347418","https://openalex.org/W1969923398","https://openalex.org/W2166024367","https://openalex.org/W2772917594","https://openalex.org/W3009238340"],"abstract_inverted_index":{"In":[0],"this":[1],"retrospective":[2],"study,":[3],"we":[4],"annotated":[5],"44":[6],"structures":[7],"on":[8,52,66,77,83,91],"two":[9],"datasets:":[10],"an":[11,28,70],"internal":[12,41,79],"dataset":[13,30,42,80],"of":[14,31,75],"1,518":[15],"MRI":[16,33,63],"sequences":[17,34],"from":[18,35],"843":[19],"patients":[20,37],"at":[21],"the":[22,44,53,78,84,94],"Mount":[23],"Sinai":[24],"Health":[25],"System,":[26],"and":[27,64,81,93],"external":[29,54,85,95],"397":[32],"263":[36],"for":[38],"benchmarking.":[39],"The":[40],"trained":[43],"nnU-Net":[45],"model":[46],"MRAnnotator,":[47],"which":[48],"demonstrated":[49],"strong":[50],"generalizability":[51],"dataset.":[55],"MRAnnotator":[56],"outperformed":[57],"existing":[58],"models":[59],"such":[60],"as":[61],"TotalSegmentator":[62],"MRSegmentator":[65],"both":[67],"datasets,":[68],"achieving":[69],"overall":[71],"average":[72],"Dice":[73],"score":[74],"0.878":[76],"0.875":[82],"set.":[86],"Model":[87],"weights":[88],"are":[89],"available":[90],"GitHub,":[92],"test":[96],"set":[97],"can":[98],"be":[99],"shared":[100],"upon":[101],"request.":[102]},"counts_by_year":[],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2024-02-06T00:00:00"}
