{"id":"https://openalex.org/W4390810226","doi":"https://doi.org/10.48550/arxiv.2401.04887","title":"Cited But Not Archived: Analyzing the Status of Code References in Scholarly Articles","display_name":"Cited But Not Archived: Analyzing the Status of Code References in Scholarly Articles","publication_year":2024,"publication_date":"2024-01-10","ids":{"openalex":"https://openalex.org/W4390810226","doi":"https://doi.org/10.48550/arxiv.2401.04887"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2401.04887","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2401.04887","pdf_url":"https://arxiv.org/pdf/2401.04887","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2401.04887","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052232148","display_name":"Emily Escamilla","orcid":"https://orcid.org/0000-0003-3845-7842"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Escamilla, Emily","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073828706","display_name":"Martin Klein","orcid":"https://orcid.org/0000-0003-0130-2097"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Klein, Martin","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022064080","display_name":"Talya Cooper","orcid":"https://orcid.org/0000-0003-4241-6330"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Cooper, Talya","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090729304","display_name":"Vicky Rampin","orcid":"https://orcid.org/0000-0003-4298-168X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rampin, Vicky","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085719625","display_name":"Michele C. Weigle","orcid":"https://orcid.org/0000-0002-2787-7166"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Weigle, Michele C.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5081811192","display_name":"Michael L. Nelson","orcid":"https://orcid.org/0000-0003-3749-8116"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nelson, Michael L.","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5052232148"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9627000093460083,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.6768441796302795},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5843740105628967},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.5084928274154663},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4755955636501312},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.44651052355766296},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.431036114692688},{"id":"https://openalex.org/keywords/library-science","display_name":"Library science","score":0.36504828929901123}],"concepts":[{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.6768441796302795},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5843740105628967},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.5084928274154663},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4755955636501312},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.44651052355766296},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.431036114692688},{"id":"https://openalex.org/C161191863","wikidata":"https://www.wikidata.org/wiki/Q199655","display_name":"Library science","level":1,"score":0.36504828929901123},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2401.04887","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2401.04887","pdf_url":"https://arxiv.org/pdf/2401.04887","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},{"id":"doi:10.48550/arxiv.2401.04887","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2401.04887","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2401.04887","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2401.04887","pdf_url":"https://arxiv.org/pdf/2401.04887","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/11","display_name":"Sustainable cities and communities","score":0.75}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W3104152981","https://openalex.org/W3002459461","https://openalex.org/W4285169523","https://openalex.org/W4300711971","https://openalex.org/W4382813275","https://openalex.org/W1518733110","https://openalex.org/W2100097978","https://openalex.org/W3127553152","https://openalex.org/W3081644756"],"abstract_inverted_index":{"One":[0],"in":[1,6,25,72],"five":[2],"arXiv":[3],"articles":[4],"published":[5],"2021":[7],"contained":[8,100],"a":[9,12,111],"URI":[10,89,125,136,146],"to":[11,33,120],"Git":[13],"Hosting":[14],"Platform":[15],"(GHP),":[16],"which":[17],"demonstrates":[18],"the":[19,34,40,56,65,75,93,102,124,130,135,145,165],"growing":[20],"prevalence":[21],"of":[22,46,78,87,113],"GHP":[23,29,88,94,114,154],"URIs":[24,30,95,115],"scholarly":[26,98,118],"publications.":[27],"However,":[28,91],"are":[31,92],"vulnerable":[32],"same":[35],"reference":[36],"rot":[37],"that":[38,158],"plagues":[39],"Web":[41,83,106,150,181],"at":[42],"large.":[43],"The":[44],"disappearance":[45],"software":[47],"hosting":[48],"platforms,":[49],"like":[50],"Gitorious":[51],"and":[52,55,68,82,105,142,175],"Google":[53],"Code,":[54],"source":[57,66],"code":[58,67],"they":[59],"contain":[60,85],"threatens":[61],"research":[62],"reproducibility.":[63],"Archiving":[64],"development":[69],"history":[70],"available":[71,128,163],"GHPs":[73],"enables":[74],"long-term":[76],"reproducibility":[77],"research.":[79],"Software":[80,103,140,173],"Heritage":[81,104],"archives":[84,86],"resources.":[90],"referenced":[96],"by":[97,139,149,172,180],"publications":[99,119],"within":[101],"archive":[107],"collections?":[108],"We":[109],"analyzed":[110],"dataset":[112],"extracted":[116],"from":[117],"determine":[121],"(1)":[122],"is":[123],"still":[126,161],"publicly":[127,162],"on":[129,164],"live":[131,166],"Web?,":[132],"(2)":[133],"has":[134,144],"been":[137,147,170,178],"archived":[138,148,171,179],"Heritage?,":[141],"(3)":[143],"archives?":[151],"Of":[152],"all":[153],"URIs,":[155],"we":[156],"found":[157],"93.98%":[159],"were":[160],"Web,":[167],"68.39%":[168],"had":[169,177],"Heritage,":[174],"81.43%":[176],"archives.":[182]},"counts_by_year":[],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
