{"id":"https://openalex.org/W4390722654","doi":"https://doi.org/10.48550/arxiv.2401.02965","title":"Perceptual and technical barriers in sharing and formatting metadata accompanying omics studies","display_name":"Perceptual and technical barriers in sharing and formatting metadata accompanying omics studies","publication_year":2023,"publication_date":"2023-11-22","ids":{"openalex":"https://openalex.org/W4390722654","doi":"https://doi.org/10.48550/arxiv.2401.02965"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2401.02965","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2401.02965","pdf_url":"https://arxiv.org/pdf/2401.02965","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2401.02965","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072263573","display_name":"Yu-Ning Huang","orcid":"https://orcid.org/0000-0003-1697-4267"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Huang, Yu-Ning","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049770701","display_name":"Michael I. Love","orcid":"https://orcid.org/0000-0001-8401-0545"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Love, Michael I.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040745063","display_name":"Cynthia Ronkowski","orcid":"https://orcid.org/0000-0002-8089-2808"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ronkowski, Cynthia Flaire","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056619259","display_name":"Dhrithi Deshpande","orcid":"https://orcid.org/0000-0003-3794-7364"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Deshpande, Dhrithi","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089183537","display_name":"Lynn M. Schriml","orcid":"https://orcid.org/0000-0001-8910-9851"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Schriml, Lynn M.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013513119","display_name":"Annie Wong\u2010Beringer","orcid":"https://orcid.org/0000-0003-3302-1409"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wong-Beringer, Annie","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070745825","display_name":"Barend Mons","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mons, Barend","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076593250","display_name":"Russell Corbett\u2010Detig","orcid":"https://orcid.org/0000-0001-6535-2478"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Corbett-Detig, Russell","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009068138","display_name":"Chris Hunter","orcid":"https://orcid.org/0000-0002-1335-0881"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hunter, Christopher I","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032971510","display_name":"Jason H. Moore","orcid":"https://orcid.org/0000-0002-5015-1099"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Moore, Jason H.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101434591","display_name":"Lana X. Garmire","orcid":"https://orcid.org/0000-0002-5643-2668"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Garmire, Lana X.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050966078","display_name":"T. B. K. Reddy","orcid":"https://orcid.org/0000-0002-0871-5567"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Reddy, T. B. K.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Hide, Winston A.","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hide, Winston A.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036068985","display_name":"Atul J. Butte","orcid":"https://orcid.org/0000-0002-7433-2740"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Butte, Atul J.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029455059","display_name":"Mark D. Robinson","orcid":"https://orcid.org/0000-0002-3048-5518"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Robinson, Mark D.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5017101305","display_name":"Serghei Mangul","orcid":"https://orcid.org/0000-0003-4770-3443"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mangul, Serghei","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":16,"corresponding_author_ids":["https://openalex.org/A5072263573"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9851999878883362,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9851999878883362,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9783999919891357,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11719","display_name":"Data Quality and Management","score":0.9514999985694885,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.8554953336715698},{"id":"https://openalex.org/keywords/data-sharing","display_name":"Data sharing","score":0.6741644144058228},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6563690304756165},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5768036246299744},{"id":"https://openalex.org/keywords/standardization","display_name":"Standardization","score":0.5485360622406006},{"id":"https://openalex.org/keywords/incentive","display_name":"Incentive","score":0.5205332040786743},{"id":"https://openalex.org/keywords/reuse","display_name":"Reuse","score":0.508597731590271},{"id":"https://openalex.org/keywords/promotion","display_name":"Promotion (chess)","score":0.4443686306476593},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.40257537364959717},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3359569311141968},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1558036208152771},{"id":"https://openalex.org/keywords/political-science","display_name":"Political science","score":0.09986358880996704}],"concepts":[{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.8554953336715698},{"id":"https://openalex.org/C2779965156","wikidata":"https://www.wikidata.org/wiki/Q5227350","display_name":"Data sharing","level":3,"score":0.6741644144058228},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6563690304756165},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5768036246299744},{"id":"https://openalex.org/C188087704","wikidata":"https://www.wikidata.org/wiki/Q369577","display_name":"Standardization","level":2,"score":0.5485360622406006},{"id":"https://openalex.org/C29122968","wikidata":"https://www.wikidata.org/wiki/Q1414816","display_name":"Incentive","level":2,"score":0.5205332040786743},{"id":"https://openalex.org/C206588197","wikidata":"https://www.wikidata.org/wiki/Q846574","display_name":"Reuse","level":2,"score":0.508597731590271},{"id":"https://openalex.org/C98147612","wikidata":"https://www.wikidata.org/wiki/Q215599","display_name":"Promotion (chess)","level":3,"score":0.4443686306476593},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.40257537364959717},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3359569311141968},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1558036208152771},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.09986358880996704},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C175444787","wikidata":"https://www.wikidata.org/wiki/Q39072","display_name":"Microeconomics","level":1,"score":0.0},{"id":"https://openalex.org/C548081761","wikidata":"https://www.wikidata.org/wiki/Q180388","display_name":"Waste management","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:arXiv.org:2401.02965","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2401.02965","pdf_url":"https://arxiv.org/pdf/2401.02965","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"pmh:ark:/13030/qt94t0m021","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"doi:10.48550/arxiv.2401.02965","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2401.02965","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2401.02965","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2401.02965","pdf_url":"https://arxiv.org/pdf/2401.02965","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.6200000047683716,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G1131840361","display_name":null,"funder_award_id":"2041984","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G1176383031","display_name":null,"funder_award_id":"UL1 TR001872","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G1569258925","display_name":null,"funder_award_id":"R01-HG009937","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2166889589","display_name":null,"funder_award_id":"1U24HG012557-01","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G2480835067","display_name":null,"funder_award_id":"R01-HG009937","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G2649483431","display_name":null,"funder_award_id":"R01AI173172","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2808180670","display_name":null,"funder_award_id":"UL1 TR0018","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2866775907","display_name":null,"funder_award_id":"AG066833","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2895356224","display_name":null,"funder_award_id":"TR001872","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2907027300","display_name":null,"funder_award_id":"2135954","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3046558139","display_name":null,"funder_award_id":"HHSN316201200036W","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G3431790201","display_name":null,"funder_award_id":"U01-AG066833","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3497591915","display_name":null,"funder_award_id":"(NIH)","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G39175869","display_name":null,"funder_award_id":"HG009937","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G4624317431","display_name":null,"funder_award_id":"HG009937","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5437152916","display_name":null,"funder_award_id":"UL1 TR001872","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6245908341","display_name":null,"funder_award_id":"UL1 TR001872","funder_id":"https://openalex.org/F4320332622","funder_display_name":"University of California, San Francisco"},{"id":"https://openalex.org/G6345853531","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6566870994","display_name":null,"funder_award_id":"2316223","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7120641930","display_name":null,"funder_award_id":"TR001872","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G8002845744","display_name":null,"funder_award_id":"20003","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332622","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4390722654.pdf","grobid_xml":"https://content.openalex.org/works/W4390722654.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2378767206","https://openalex.org/W1540871478","https://openalex.org/W328308450","https://openalex.org/W282641168","https://openalex.org/W2376963063","https://openalex.org/W2066396794","https://openalex.org/W2366734808","https://openalex.org/W2371669717","https://openalex.org/W3211609468","https://openalex.org/W2372282971"],"abstract_inverted_index":{"Metadata,":[0],"often":[1],"termed":[2],"\"data":[3],"about":[4],"data,\"":[5],"is":[6],"crucial":[7],"for":[8,111],"organizing,":[9],"understanding,":[10],"and":[11,23,30,46,52,70,94,105,114,130,134,136,144,161],"managing":[12],"vast":[13],"omics":[14,75],"datasets.":[15],"It":[16],"aids":[17],"in":[18,98],"efficient":[19],"data":[20,32,43],"discovery,":[21],"integration,":[22],"interpretation,":[24],"enabling":[25],"users":[26],"to":[27,84],"access,":[28],"comprehend,":[29],"utilize":[31],"effectively.":[33],"Its":[34],"significance":[35],"spans":[36],"the":[37,56,65,81,88,106,120,126,137,151],"domains":[38],"of":[39,58,67,74,90,108,122,128,139],"scientific":[40,152],"research,":[41],"facilitating":[42,157],"reproducibility,":[44],"reusability,":[45],"secondary":[47],"analysis.":[48],"However,":[49],"numerous":[50],"perceptual":[51],"technical":[53],"barriers":[54,63,83],"hinder":[55,71],"sharing":[57],"metadata":[59,85,112],"among":[60],"researchers.":[61],"These":[62],"compromise":[64],"reliability":[66],"research":[68,146,163],"results":[69],"integrative":[72],"meta-analyses":[73],"studies":[76],".":[77],"This":[78],"study":[79,99],"highlights":[80],"key":[82],"sharing,":[86],"including":[87],"lack":[89],"uniform":[91],"standards,":[92],"privacy":[93],"legal":[95],"concerns,":[96],"limitations":[97],"design,":[100],"limited":[101],"incentives,":[102],"inadequate":[103],"infrastructure,":[104],"dearth":[107],"well-trained":[109],"personnel":[110],"management":[113],"reuse.":[115],"Proposed":[116],"solutions":[117],"include":[118],"emphasizing":[119],"promotion":[121],"standardization,":[123],"educational":[124],"efforts,":[125],"role":[127],"journals":[129],"funding":[131],"agencies,":[132],"incentives":[133],"rewards,":[135],"improvement":[138],"infrastructure.":[140],"More":[141],"accurate,":[142,159],"reliable,":[143,160],"impactful":[145,162],"outcomes":[147],"are":[148],"achievable":[149],"if":[150],"community":[153],"addresses":[154],"these":[155],"barriers,":[156],"more":[158],"outcomes.":[164]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
