{"id":"https://openalex.org/W4389767945","doi":"https://doi.org/10.48550/arxiv.2312.07711","title":"Leveraging Large Language Models to Build and Execute Computational Workflows","display_name":"Leveraging Large Language Models to Build and Execute Computational Workflows","publication_year":2023,"publication_date":"2023-12-12","ids":{"openalex":"https://openalex.org/W4389767945","doi":"https://doi.org/10.48550/arxiv.2312.07711"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2312.07711","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2312.07711","pdf_url":"https://arxiv.org/pdf/2312.07711","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2312.07711","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043262057","display_name":"Alejandro Duque","orcid":"https://orcid.org/0000-0003-4046-518X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Duque, Alejandro","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102592601","display_name":"Abdullah Syed","orcid":"https://orcid.org/0009-0008-1602-1873"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Syed, Abdullah","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102841844","display_name":"Kastan Day","orcid":"https://orcid.org/0000-0002-1989-3406"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Day, Kastan V.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064247100","display_name":"Matthew J. Berry","orcid":"https://orcid.org/0000-0002-8197-9577"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Berry, Matthew J.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061630529","display_name":"Daniel S. Katz","orcid":"https://orcid.org/0000-0001-5934-7525"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Katz, Daniel S.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5060025664","display_name":"Volodymyr Kindratenko","orcid":"https://orcid.org/0000-0002-9336-4756"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kindratenko, Volodymyr V.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9842000007629395,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9585000276565552,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.896122932434082},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7662885189056396},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.5942498445510864},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.5286698341369629},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4349227547645569},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4302462339401245},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.35420989990234375},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2244931161403656}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.896122932434082},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7662885189056396},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.5942498445510864},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.5286698341369629},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4349227547645569},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4302462339401245},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.35420989990234375},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2244931161403656},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2312.07711","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2312.07711","pdf_url":"https://arxiv.org/pdf/2312.07711","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"doi:10.48550/arxiv.2312.07711","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2312.07711","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2312.07711","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2312.07711","pdf_url":"https://arxiv.org/pdf/2312.07711","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4421354635","display_name":"REU Site: The future of discovery: training students to build and apply open source machine learning models and tools","funder_award_id":"2050195","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4389767945.pdf","grobid_xml":"https://content.openalex.org/works/W4389767945.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W2397952901","https://openalex.org/W2029380707","https://openalex.org/W4255934811","https://openalex.org/W2465382974","https://openalex.org/W2010229520","https://openalex.org/W2341953792"],"abstract_inverted_index":{"The":[0],"recent":[1],"development":[2],"of":[3,15],"large":[4],"language":[5],"models":[6],"(LLMs)":[7],"with":[8,12,69],"multi-billion":[9],"parameters,":[10],"coupled":[11],"the":[13,23,53],"creation":[14],"user-friendly":[16],"application":[17],"programming":[18],"interfaces":[19],"(APIs),":[20],"has":[21],"paved":[22],"way":[24],"for":[25,55,77],"automatically":[26],"generating":[27],"and":[28,73],"executing":[29],"code":[30],"in":[31],"response":[32],"to":[33,47,66],"straightforward":[34],"human":[35],"queries.":[36],"This":[37],"paper":[38],"explores":[39],"how":[40],"these":[41,86],"emerging":[42],"capabilities":[43],"can":[44],"be":[45],"harnessed":[46],"facilitate":[48],"complex":[49],"scientific":[50],"workflows,":[51],"eliminating":[52],"need":[54],"traditional":[56],"coding":[57],"methods.":[58],"We":[59],"present":[60],"initial":[61],"findings":[62],"from":[63],"our":[64],"attempt":[65],"integrate":[67],"Phyloflow":[68],"OpenAI's":[70],"function-calling":[71],"API,":[72],"outline":[74],"a":[75,79],"strategy":[76],"developing":[78],"comprehensive":[80],"workflow":[81],"management":[82],"system":[83],"based":[84],"on":[85],"concepts.":[87]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
