{"id":"https://openalex.org/W4389421628","doi":"https://doi.org/10.48550/arxiv.2312.02608","title":"Panoptica -- instance-wise evaluation of 3D semantic and instance segmentation maps","display_name":"Panoptica -- instance-wise evaluation of 3D semantic and instance segmentation maps","publication_year":2023,"publication_date":"2023-12-05","ids":{"openalex":"https://openalex.org/W4389421628","doi":"https://doi.org/10.48550/arxiv.2312.02608"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2312.02608","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2312.02608","pdf_url":"https://arxiv.org/pdf/2312.02608","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2312.02608","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5104159486","display_name":"Florian Kofler","orcid":"https://orcid.org/0000-0003-0642-7884"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kofler, Florian","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076037370","display_name":"Hendrik M\u00f6ller","orcid":"https://orcid.org/0009-0001-1978-5894"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"M\u00f6ller, Hendrik","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036341020","display_name":"Josef A. Buchner","orcid":"https://orcid.org/0000-0003-3322-2534"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Buchner, Josef A.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077697378","display_name":"Ezequiel de la Rosa","orcid":"https://orcid.org/0000-0002-9042-1962"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"de la Rosa, Ezequiel","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039935645","display_name":"Ivan Ezhov","orcid":"https://orcid.org/0000-0002-0862-6513"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ezhov, Ivan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023188404","display_name":"Marcel Rosier","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rosier, Marcel","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093436451","display_name":"Isra Mekki","orcid":"https://orcid.org/0000-0003-1460-932X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mekki, Isra","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018632773","display_name":"Suprosanna Shit","orcid":"https://orcid.org/0000-0003-4435-7207"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Shit, Suprosanna","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052726503","display_name":"Moritz Negwer","orcid":"https://orcid.org/0000-0002-4470-6641"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Negwer, Moritz","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006622566","display_name":"Rami Al-Maskari","orcid":"https://orcid.org/0000-0001-8256-3795"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Al-Maskari, Rami","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050828185","display_name":"Ali Ert\u00fcrk","orcid":"https://orcid.org/0000-0001-5163-5100"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ert\u00fcrk, Ali","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088181138","display_name":"Shankeeth Vinayahalingam","orcid":"https://orcid.org/0000-0002-2679-3841"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vinayahalingam, Shankeeth","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072647800","display_name":"Fabian Isensee","orcid":"https://orcid.org/0000-0002-3519-5886"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Isensee, Fabian","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068309305","display_name":"Sarthak Pati","orcid":"https://orcid.org/0000-0003-2243-8487"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Pati, Sarthak","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006461848","display_name":"Daniel Rueckert","orcid":"https://orcid.org/0000-0002-5683-5889"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rueckert, Daniel","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003938965","display_name":"Jan S. Kirschke","orcid":"https://orcid.org/0000-0002-7557-0003"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kirschke, Jan S.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083222391","display_name":"Stefan K. Ehrlich","orcid":"https://orcid.org/0000-0002-3634-6973"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ehrlich, Stefan K.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079787198","display_name":"Annika Reinke","orcid":"https://orcid.org/0000-0003-4363-1876"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Reinke, Annika","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002068604","display_name":"Bjoern Menze","orcid":"https://orcid.org/0000-0003-4136-5690"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Menze, Bjoern","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039985608","display_name":"Benedikt Wiestler","orcid":"https://orcid.org/0000-0002-2963-7772"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wiestler, Benedikt","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5005966038","display_name":"Marie Piraud","orcid":"https://orcid.org/0000-0002-4917-2458"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Piraud, Marie","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10036","display_name":"Advanced Neural Network Applications","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7629574537277222},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.7374101281166077},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.7246678471565247},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.5196970105171204},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.4361937344074249},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.43555474281311035},{"id":"https://openalex.org/keywords/intersection","display_name":"Intersection (aeronautics)","score":0.433857798576355},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4253518283367157},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.10699412226676941},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09160062670707703},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.08581840991973877}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7629574537277222},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.7374101281166077},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.7246678471565247},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.5196970105171204},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.4361937344074249},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.43555474281311035},{"id":"https://openalex.org/C64543145","wikidata":"https://www.wikidata.org/wiki/Q162942","display_name":"Intersection (aeronautics)","level":2,"score":0.433857798576355},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4253518283367157},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.10699412226676941},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09160062670707703},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.08581840991973877},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2312.02608","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2312.02608","pdf_url":"https://arxiv.org/pdf/2312.02608","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"doi:10.48550/arxiv.2312.02608","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2312.02608","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2312.02608","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2312.02608","pdf_url":"https://arxiv.org/pdf/2312.02608","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.5299999713897705,"display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G3424536837","display_name":"Translational Brain Imaging Training Network","funder_award_id":"765148","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5445020354","display_name":null,"funder_award_id":"R01CA269948","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5699669439","display_name":null,"funder_award_id":"GSC 81","funder_id":"https://openalex.org/F4320338208","funder_display_name":"International Graduate School of Science and Engineering"},{"id":"https://openalex.org/G6917559238","display_name":null,"funder_award_id":"GSC 81","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G802331887","display_name":null,"funder_award_id":"subproject B12","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8654549683","display_name":null,"funder_award_id":"SFB 824","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320328148","display_name":"Helmut Horten Stiftung","ror":"https://ror.org/00dc6k529"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320338208","display_name":"International Graduate School of Science and Engineering","ror":null}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4389421628.pdf"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2341492732","https://openalex.org/W3187193180","https://openalex.org/W106542691","https://openalex.org/W4287027380","https://openalex.org/W1699080303","https://openalex.org/W4297799326","https://openalex.org/W3116064965","https://openalex.org/W3193760048","https://openalex.org/W4285822516","https://openalex.org/W2505261959"],"abstract_inverted_index":{"This":[0],"paper":[1],"introduces":[2],"panoptica,":[3],"a":[4,31,71,112],"versatile":[5],"and":[6,18,29,62,67],"performance-optimized":[7],"package":[8,56],"designed":[9],"for":[10,98],"computing":[11],"instance-wise":[12,94],"segmentation":[13,20,119],"quality":[14,42],"metrics":[15,28,73],"from":[16],"2D":[17],"3D":[19],"maps.":[21],"panoptica":[22,69,84,110],"addresses":[23],"the":[24,36,48,103],"limitations":[25],"of":[26,83,102,118],"existing":[27],"provides":[30],"modular":[32],"framework":[33],"that":[34],"complements":[35],"original":[37],"intersection":[38],"over":[39],"union-based":[40],"panoptic":[41],"with":[43],"other":[44],"metrics,":[45],"such":[46],"as":[47,111],"distance":[49],"metric":[50],"Average":[51],"Symmetric":[52],"Surface":[53],"Distance.":[54],"The":[55,81],"is":[57,85,96],"open-source,":[58],"implemented":[59],"in":[60],"Python,":[61],"accompanied":[63],"by":[64],"comprehensive":[65],"documentation":[66],"tutorials.":[68],"employs":[70],"three-step":[72],"computation":[74],"process":[75],"to":[76],"cover":[77],"diverse":[78],"use":[79],"cases.":[80],"efficacy":[82],"demonstrated":[86],"on":[87],"various":[88],"real-world":[89],"biomedical":[90],"datasets,":[91],"where":[92],"an":[93,99],"evaluation":[95,117],"instrumental":[97],"accurate":[100],"representation":[101],"underlying":[104],"clinical":[105],"task.":[106],"Overall,":[107],"we":[108],"envision":[109],"valuable":[113],"tool":[114],"facilitating":[115],"in-depth":[116],"methods.":[120]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2026-07-11T18:08:03.149640","created_date":"2023-12-07T00:00:00"}
