{"id":"https://openalex.org/W4389157242","doi":"https://doi.org/10.48550/arxiv.2311.14971","title":"Segmentation of diagnostic tissue compartments on whole slide images with renal thrombotic microangiopathies (TMAs)","display_name":"Segmentation of diagnostic tissue compartments on whole slide images with renal thrombotic microangiopathies (TMAs)","publication_year":2023,"publication_date":"2023-11-25","ids":{"openalex":"https://openalex.org/W4389157242","doi":"https://doi.org/10.48550/arxiv.2311.14971"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2311.14971","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2311.14971","pdf_url":"https://arxiv.org/pdf/2311.14971","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2311.14971","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060238453","display_name":"Huy Q. Vo","orcid":"https://orcid.org/0009-0004-3130-5066"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Vo, Huy Q.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060060936","display_name":"Pietro Antonio Cicalese","orcid":"https://orcid.org/0000-0002-6620-2911"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Cicalese, Pietro A.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071939353","display_name":"Surya V. Seshan","orcid":"https://orcid.org/0000-0003-4384-0694"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Seshan, Surya","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013708028","display_name":"Syed A. A. Rizvi","orcid":"https://orcid.org/0000-0002-2385-5672"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rizvi, Syed A.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093382178","display_name":"Aneesh Vathul","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vathul, Aneesh","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076021671","display_name":"Gloria Bueno","orcid":"https://orcid.org/0000-0002-0902-387X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bueno, Gloria","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068267966","display_name":"An\u00edbal Pedraza","orcid":"https://orcid.org/0000-0001-7748-6756"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dorado, Anibal Pedraza","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039930487","display_name":"Niels Grabe","orcid":"https://orcid.org/0000-0003-1732-3706"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Grabe, Niels","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042767292","display_name":"Katharina Stolle","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Stolle, Katharina","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059086195","display_name":"Francesco Pesce","orcid":"https://orcid.org/0000-0002-2882-4226"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Pesce, Francesco","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091785748","display_name":"Joris J. T. H. Roelofs","orcid":"https://orcid.org/0000-0001-9595-6571"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Roelofs, Joris J. T. H.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016991213","display_name":"Jesper Kers","orcid":"https://orcid.org/0000-0002-2418-5279"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kers, Jesper","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050013557","display_name":"Vitoantonio Bevilacqua","orcid":"https://orcid.org/0000-0002-3088-0788"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bevilacqua, Vitoantonio","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010391595","display_name":"Nicola Altini","orcid":"https://orcid.org/0000-0001-7353-4968"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Altini, Nicola","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110737249","display_name":"Bernd Schr\u00f6ppel","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Schr\u00f6ppel, Bernd","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012705049","display_name":"Dario Roccatello","orcid":"https://orcid.org/0000-0002-4419-6813"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Roccatello, Dario","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062514406","display_name":"Antonella Barreca","orcid":"https://orcid.org/0000-0003-3566-1995"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Barreca, Antonella","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017039749","display_name":"Savino Sciascia","orcid":"https://orcid.org/0000-0003-1266-9441"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sciascia, Savino","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042585597","display_name":"Chandra Mohan","orcid":"https://orcid.org/0000-0001-7896-5740"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mohan, Chandra","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101985554","display_name":"Hien Van Nguyen","orcid":"https://orcid.org/0000-0001-7280-2182"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nguyen, Hien V.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5050600090","display_name":"Jan U. Becker","orcid":"https://orcid.org/0000-0003-2929-8085"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Becker, Jan U.","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":21,"corresponding_author_ids":["https://openalex.org/A5060238453"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12067","display_name":"Renal and Vascular Pathologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12067","display_name":"Renal and Vascular Pathologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11029","display_name":"Renal Diseases and Glomerulopathies","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/2727","display_name":"Nephrology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13648","display_name":"Cerebrovascular and genetic disorders","score":0.9663000106811523,"subfield":{"id":"https://openalex.org/subfields/2728","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.6595989465713501},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.5751227140426636},{"id":"https://openalex.org/keywords/biopsy","display_name":"Biopsy","score":0.551483154296875},{"id":"https://openalex.org/keywords/renal-biopsy","display_name":"Renal biopsy","score":0.4411695599555969},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.41765347123146057},{"id":"https://openalex.org/keywords/radiology","display_name":"Radiology","score":0.377383828163147},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21652168035507202},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.20471924543380737}],"concepts":[{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.6595989465713501},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.5751227140426636},{"id":"https://openalex.org/C2775934546","wikidata":"https://www.wikidata.org/wiki/Q179991","display_name":"Biopsy","level":2,"score":0.551483154296875},{"id":"https://openalex.org/C2781087799","wikidata":"https://www.wikidata.org/wiki/Q7312483","display_name":"Renal biopsy","level":3,"score":0.4411695599555969},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.41765347123146057},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.377383828163147},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21652168035507202},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.20471924543380737}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2311.14971","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2311.14971","pdf_url":"https://arxiv.org/pdf/2311.14971","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"doi:10.48550/arxiv.2311.14971","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2311.14971","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2311.14971","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2311.14971","pdf_url":"https://arxiv.org/pdf/2311.14971","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4389157242.pdf"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4379231730","https://openalex.org/W4389858081","https://openalex.org/W2417362629","https://openalex.org/W1556631744","https://openalex.org/W2000746001","https://openalex.org/W2392514475","https://openalex.org/W2056583648","https://openalex.org/W1543817608","https://openalex.org/W2013316895","https://openalex.org/W2945964505"],"abstract_inverted_index":{"The":[0],"thrombotic":[1],"microangiopathies":[2],"(TMAs)":[3],"manifest":[4],"in":[5,148],"renal":[6,23,47,72,145,150,167],"biopsy":[7,24,146,168],"histology":[8],"with":[9,74,80,108,170],"a":[10,22,31,35,51,65,81,104,109,134],"broad":[11],"spectrum":[12],"of":[13,26,42,67,142,166],"acute":[14],"and":[15,38,76,126,162],"chronic":[16],"findings.":[17],"Precise":[18],"diagnostic":[19,57],"criteria":[20],"for":[21,54,118,157],"diagnosis":[25],"TMA":[27,86],"are":[28],"missing.":[29],"As":[30],"first":[32],"step":[33],"towards":[34],"machine":[36,160],"learning-":[37],"computer":[39,163],"vision-based":[40],"analysis":[41,165],"wholes":[43],"slide":[44,69],"images":[45,70],"from":[46,71,133],"biopsies,":[48],"we":[49,152],"trained":[50],"segmentation":[52,101,116,141],"model":[53,102],"the":[55,120,143,155],"decisive":[56,144],"kidney":[58],"tissue":[59,106],"compartments":[60,147],"artery,":[61],"arteriole,":[62],"glomerulus":[63],"on":[64,129],"set":[66],"whole":[68],"biopsies":[73],"TMAs":[75],"Mimickers":[77],"(distinct":[78],"diseases":[79],"similar":[82],"nephropathological":[83],"appearance":[84],"as":[85],"like":[87],"severe":[88],"benign":[89],"nephrosclerosis,":[90],"various":[91],"vasculitides,":[92],"Bevacizumab-plug":[93],"glomerulopathy,":[94],"arteriolar":[95],"light":[96],"chain":[97],"deposition":[98],"disease).":[99],"Our":[100],"combines":[103],"U-Net-based":[105],"detection":[107],"Shifted":[110],"windows-transformer":[111],"architecture":[112],"to":[113],"reach":[114],"excellent":[115],"results":[117],"even":[119,128],"most":[121],"severely":[122],"altered":[123],"glomeruli,":[124],"arterioles":[125],"arteries,":[127],"unseen":[130],"staining":[131],"domains":[132],"different":[135],"nephropathology":[136],"lab.":[137],"With":[138],"accurate":[139],"automatic":[140],"human":[149],"vasculopathies,":[151],"have":[153],"laid":[154],"foundation":[156],"large-scale":[158],"compartment-specific":[159],"learning":[161],"vision":[164],"repositories":[169],"TMAs.":[171]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-02-09T09:26:11.010843","created_date":"2023-11-30T00:00:00"}
