{"id":"https://openalex.org/W4388717341","doi":"https://doi.org/10.48550/arxiv.2311.08269","title":"Defining the boundaries: challenges and advances in identifying cells in microscopy images","display_name":"Defining the boundaries: challenges and advances in identifying cells in microscopy images","publication_year":2023,"publication_date":"2023-11-14","ids":{"openalex":"https://openalex.org/W4388717341","doi":"https://doi.org/10.48550/arxiv.2311.08269"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2311.08269","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2311.08269","pdf_url":"https://arxiv.org/pdf/2311.08269","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2311.08269","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5093272016","display_name":"Nodar Gogoberidze","orcid":null},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"funder","lineage":["https://openalex.org/I107606265"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Gogoberidze, Nodar","raw_affiliation_strings":["Imaging Platform, Broad Institute, Cambridge, 02142, Ma, USA"],"affiliations":[{"raw_affiliation_string":"Imaging Platform, Broad Institute, Cambridge, 02142, Ma, USA","institution_ids":["https://openalex.org/I107606265"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038979216","display_name":"Beth A. Cimini","orcid":"https://orcid.org/0000-0001-9640-9318"},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"funder","lineage":["https://openalex.org/I107606265"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cimini, Beth A.","raw_affiliation_strings":["Imaging Platform, Broad Institute, Cambridge, 02142, Ma, USA"],"affiliations":[{"raw_affiliation_string":"Imaging Platform, Broad Institute, Cambridge, 02142, Ma, USA","institution_ids":["https://openalex.org/I107606265"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5093272016"],"corresponding_institution_ids":["https://openalex.org/I107606265"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12874","display_name":"Digital Imaging for Blood Diseases","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.8316910862922668},{"id":"https://openalex.org/keywords/usability","display_name":"Usability","score":0.7458310127258301},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6880481243133545},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.575440526008606},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.5352792143821716},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4836498498916626},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4683729112148285},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.4597246050834656},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.33518868684768677}],"concepts":[{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.8316910862922668},{"id":"https://openalex.org/C170130773","wikidata":"https://www.wikidata.org/wiki/Q216378","display_name":"Usability","level":2,"score":0.7458310127258301},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6880481243133545},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.575440526008606},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.5352792143821716},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4836498498916626},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4683729112148285},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.4597246050834656},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.33518868684768677},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2311.08269","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2311.08269","pdf_url":"https://arxiv.org/pdf/2311.08269","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"doi:10.48550/arxiv.2311.08269","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2311.08269","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2311.08269","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2311.08269","pdf_url":"https://arxiv.org/pdf/2311.08269","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"sustainable_development_goals":[{"score":0.6299999952316284,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4388717341.pdf","grobid_xml":"https://content.openalex.org/works/W4388717341.grobid-xml"},"referenced_works_count":71,"referenced_works":["https://openalex.org/W2037947871","https://openalex.org/W2167279371","https://openalex.org/W2296335794","https://openalex.org/W2302501749","https://openalex.org/W2549139847","https://openalex.org/W2586745507","https://openalex.org/W2604622795","https://openalex.org/W2739783898","https://openalex.org/W2811106513","https://openalex.org/W2945976633","https://openalex.org/W2963073614","https://openalex.org/W2980998394","https://openalex.org/W2991144311","https://openalex.org/W3003623648","https://openalex.org/W3022215132","https://openalex.org/W3027017053","https://openalex.org/W3087685572","https://openalex.org/W3097353418","https://openalex.org/W3100296314","https://openalex.org/W3112701542","https://openalex.org/W3121575412","https://openalex.org/W3132558036","https://openalex.org/W3153558340","https://openalex.org/W3156859314","https://openalex.org/W3165839290","https://openalex.org/W3173982537","https://openalex.org/W3184424659","https://openalex.org/W3196890347","https://openalex.org/W3201812816","https://openalex.org/W3204614423","https://openalex.org/W3208565361","https://openalex.org/W3211490618","https://openalex.org/W3214596602","https://openalex.org/W4205091810","https://openalex.org/W4205786526","https://openalex.org/W4214639934","https://openalex.org/W4220652264","https://openalex.org/W4221076955","https://openalex.org/W4225419582","https://openalex.org/W4230204850","https://openalex.org/W4281749985","https://openalex.org/W4285387962","https://openalex.org/W4297575730","https://openalex.org/W4303446421","https://openalex.org/W4306411710","https://openalex.org/W4306412158","https://openalex.org/W4308361273","https://openalex.org/W4310922815","https://openalex.org/W4321748655","https://openalex.org/W4322760890","https://openalex.org/W4323717348","https://openalex.org/W4362679702","https://openalex.org/W4367355047","https://openalex.org/W4377019739","https://openalex.org/W4379390634","https://openalex.org/W4380551172","https://openalex.org/W4381470022","https://openalex.org/W4383879187","https://openalex.org/W4383904219","https://openalex.org/W4383956887","https://openalex.org/W4384920712","https://openalex.org/W4385246338","https://openalex.org/W4385302628","https://openalex.org/W4385415128","https://openalex.org/W4385825417","https://openalex.org/W4385987495","https://openalex.org/W4386053872","https://openalex.org/W4386271735","https://openalex.org/W4386894433","https://openalex.org/W4391756091","https://openalex.org/W4394593075"],"related_works":["https://openalex.org/W4389670110","https://openalex.org/W2618286804","https://openalex.org/W2429057255","https://openalex.org/W2187546663","https://openalex.org/W148745890","https://openalex.org/W2611942503","https://openalex.org/W4315621326","https://openalex.org/W2899790217","https://openalex.org/W2598865957","https://openalex.org/W1522196789"],"abstract_inverted_index":{"Segmentation,":[0],"or":[1],"the":[2,13,44,63,100],"outlining":[3],"of":[4,17,102],"objects":[5],"within":[6,19],"images,":[7],"is":[8],"a":[9,103],"critical":[10],"step":[11],"in":[12,28,43,54,72],"measurement":[14],"and":[15,56,58,82,89,97],"analysis":[16],"cells":[18],"microscopy":[20],"images.":[21],"While":[22],"improvements":[23],"continue":[24,51,68],"to":[25,52,69,94],"be":[26],"made":[27],"tools":[29,39],"that":[30],"rely":[31],"on":[32,86],"classical":[33],"methods":[34],"for":[35],"segmentation,":[36],"deep":[37],"learning-based":[38],"increasingly":[40],"dominate":[41],"advances":[42],"technology.":[45],"Specialist":[46],"models":[47],"such":[48,61],"as":[49,62,78,80],"Cellpose":[50],"improve":[53],"accuracy":[55,73],"user-friendliness,":[57],"segmentation":[59],"challenges":[60],"Multi-Modality":[64],"Cell":[65],"Segmentation":[66],"Challenge":[67],"push":[70],"innovation":[71],"across":[74],"widely-varying":[75],"test":[76],"data":[77],"well":[79],"efficiency":[81],"usability.":[83],"Increased":[84],"attention":[85],"documentation,":[87],"sharing,":[88],"evaluation":[90],"standards":[91],"are":[92],"leading":[93],"increased":[95],"user-friendliness":[96],"acceleration":[98],"towards":[99],"goal":[101],"truly":[104],"universal":[105],"method.":[106]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2023-11-16T00:00:00"}
