{"id":"https://openalex.org/W4388651072","doi":"https://doi.org/10.48550/arxiv.2311.06185","title":"An Automated Pipeline for Tumour-Infiltrating Lymphocyte Scoring in Breast Cancer","display_name":"An Automated Pipeline for Tumour-Infiltrating Lymphocyte Scoring in Breast Cancer","publication_year":2023,"publication_date":"2023-11-10","ids":{"openalex":"https://openalex.org/W4388651072","doi":"https://doi.org/10.48550/arxiv.2311.06185"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2311.06185","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2311.06185","pdf_url":"https://arxiv.org/pdf/2311.06185","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2311.06185","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065857176","display_name":"Adam Shephard","orcid":"https://orcid.org/0000-0003-0969-2990"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Shephard, Adam J","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059185353","display_name":"Mostafa Jahanifar","orcid":"https://orcid.org/0000-0001-5842-0460"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jahanifar, Mostafa","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100653715","display_name":"Ruoyu Wang","orcid":"https://orcid.org/0000-0003-4623-6724"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wang, Ruoyu","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102828760","display_name":"Muhammad Dawood","orcid":"https://orcid.org/0000-0001-5096-9416"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dawood, Muhammad","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034385371","display_name":"Simon Graham","orcid":"https://orcid.org/0000-0002-2214-8212"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Graham, Simon","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110966928","display_name":"Kastytis \u0160idlauskas","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sidlauskas, Kastytis","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007545621","display_name":"Syed Ali Khurram","orcid":"https://orcid.org/0000-0002-0378-9380"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Khurram, Syed Ali","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069179055","display_name":"Nasir Rajpoot","orcid":"https://orcid.org/0000-0002-4706-1308"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rajpoot, Nasir M","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5041645982","display_name":"Shan E Ahmed Raza","orcid":"https://orcid.org/0000-0002-1097-1738"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Raza, Shan E Ahmed","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5065857176"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10202","display_name":"Lung Cancer Diagnosis and Treatment","score":0.9836000204086304,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.6695486307144165},{"id":"https://openalex.org/keywords/tumor-infiltrating-lymphocytes","display_name":"Tumor-infiltrating lymphocytes","score":0.6309398412704468},{"id":"https://openalex.org/keywords/stromal-cell","display_name":"Stromal cell","score":0.5954698324203491},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.548403799533844},{"id":"https://openalex.org/keywords/stroma","display_name":"Stroma","score":0.538509726524353},{"id":"https://openalex.org/keywords/oncology","display_name":"Oncology","score":0.5265790820121765},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.47573375701904297},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.45299032330513},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.3662543296813965},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.32189077138900757},{"id":"https://openalex.org/keywords/immunotherapy","display_name":"Immunotherapy","score":0.10928589105606079},{"id":"https://openalex.org/keywords/immunohistochemistry","display_name":"Immunohistochemistry","score":0.09705653786659241}],"concepts":[{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.6695486307144165},{"id":"https://openalex.org/C2778326572","wikidata":"https://www.wikidata.org/wiki/Q7852668","display_name":"Tumor-infiltrating lymphocytes","level":4,"score":0.6309398412704468},{"id":"https://openalex.org/C16930146","wikidata":"https://www.wikidata.org/wiki/Q4381253","display_name":"Stromal cell","level":2,"score":0.5954698324203491},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.548403799533844},{"id":"https://openalex.org/C52124034","wikidata":"https://www.wikidata.org/wiki/Q557179","display_name":"Stroma","level":3,"score":0.538509726524353},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.5265790820121765},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.47573375701904297},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.45299032330513},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.3662543296813965},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.32189077138900757},{"id":"https://openalex.org/C2777701055","wikidata":"https://www.wikidata.org/wiki/Q1427096","display_name":"Immunotherapy","level":3,"score":0.10928589105606079},{"id":"https://openalex.org/C204232928","wikidata":"https://www.wikidata.org/wiki/Q899285","display_name":"Immunohistochemistry","level":2,"score":0.09705653786659241},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2311.06185","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2311.06185","pdf_url":"https://arxiv.org/pdf/2311.06185","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"doi:10.48550/arxiv.2311.06185","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2311.06185","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2311.06185","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2311.06185","pdf_url":"https://arxiv.org/pdf/2311.06185","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"sustainable_development_goals":[{"score":0.7400000095367432,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4388651072.pdf"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4315562761","https://openalex.org/W2044063294","https://openalex.org/W2041236850","https://openalex.org/W4214854038","https://openalex.org/W169414703","https://openalex.org/W173733416","https://openalex.org/W203172925","https://openalex.org/W2007366900","https://openalex.org/W2413659422","https://openalex.org/W2590614645"],"abstract_inverted_index":{"Tumour-infiltrating":[0],"lymphocytes":[1],"(TILs)":[2],"are":[3],"considered":[4],"as":[5,95,138],"a":[6,61,74,139],"valuable":[7],"prognostic":[8,142],"markers":[9],"in":[10,57,88,118],"both":[11],"triple-negative":[12],"and":[13,54,92,106,130],"human":[14],"epidermal":[15],"growth":[16],"factor":[17],"receptor":[18],"2":[19],"(HER2)":[20],"positive":[21],"breast":[22,45,140],"cancer.":[23],"In":[24],"this":[25],"study,":[26],"we":[27],"introduce":[28],"an":[29],"innovative":[30],"deep":[31],"learning":[32],"pipeline":[33,137],"based":[34],"on":[35,100,108],"the":[36,41,70,80,101,109,123,127],"Efficient-UNet":[37],"architecture":[38],"to":[39,59],"predict":[40],"TILs":[42,68,75,93,114,135],"score":[43,76,115],"for":[44],"cancer":[46,141],"whole-slide":[47],"images":[48],"(WSIs).":[49],"We":[50,65],"first":[51],"segment":[52],"tumour":[53,62],"stromal":[55],"regions":[56],"order":[58],"compute":[60],"bulk":[63],"mask.":[64],"then":[66],"detect":[67],"within":[69,122],"tumour-associated":[71],"stroma,":[72],"generating":[73],"by":[77,97],"closely":[78],"mirroring":[79],"pathologist's":[81],"workflow.":[82],"Our":[83],"method":[84],"exhibits":[85],"state-of-the-art":[86],"performance":[87],"segmenting":[89],"tumour/stroma":[90],"areas":[91],"detection,":[94],"demonstrated":[96],"internal":[98],"cross-validation":[99],"TiGER":[102],"Challenge":[103],"training":[104],"dataset":[105],"evaluation":[107],"final":[110],"leaderboards.":[111],"Additionally,":[112],"our":[113,133],"proves":[116],"competitive":[117],"predicting":[119],"survival":[120],"outcomes":[121],"same":[124],"challenge,":[125],"underscoring":[126],"clinical":[128],"relevance":[129],"potential":[131],"of":[132],"automated":[134],"scoring":[136],"tool.":[143]},"counts_by_year":[],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
