{"id":"https://openalex.org/W4388555911","doi":"https://doi.org/10.48550/arxiv.2311.04846","title":"Incorporating temporal dynamics of mutations to enhance the prediction capability of antiretroviral therapy's outcome for HIV-1","display_name":"Incorporating temporal dynamics of mutations to enhance the prediction capability of antiretroviral therapy's outcome for HIV-1","publication_year":2023,"publication_date":"2023-11-08","ids":{"openalex":"https://openalex.org/W4388555911","doi":"https://doi.org/10.48550/arxiv.2311.04846"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2311.04846","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2311.04846","pdf_url":"https://arxiv.org/pdf/2311.04846","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2311.04846","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074443891","display_name":"Giulia Di Teodoro","orcid":"https://orcid.org/0000-0002-0418-0067"},"institutions":[{"id":"https://openalex.org/I4210145295","display_name":"European Society of Concurrent Enterprising Network","ror":"https://ror.org/04yvrj177","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210145295"]},{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Di Teodoro, Giulia","raw_affiliation_strings":["Sapienza University of Rome, Department of Computer Control and Management Engineering Antonio Ruberti, 00185, Rome, Italy","EuResist Network, 00152, Rome, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sapienza University of Rome, Department of Computer Control and Management Engineering Antonio Ruberti, 00185, Rome, Italy","institution_ids":["https://openalex.org/I861853513"]},{"raw_affiliation_string":"EuResist Network, 00152, Rome, Italy","institution_ids":["https://openalex.org/I4210145295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029725058","display_name":"Martin Pirkl","orcid":"https://orcid.org/0000-0002-6986-0813"},"institutions":[{"id":"https://openalex.org/I180923762","display_name":"University of Cologne","ror":"https://ror.org/00rcxh774","country_code":"DE","type":"education","lineage":["https://openalex.org/I180923762"]},{"id":"https://openalex.org/I4210115305","display_name":"German Center for Infection Research","ror":"https://ror.org/028s4q594","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210115305","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I4210153755","display_name":"University Hospital Cologne","ror":"https://ror.org/05mxhda18","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210153755"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Pirkl, Martin","raw_affiliation_strings":["University of Cologne, Institute of Virology, Faculty of Medicine and University Hospital Cologne, 50935, Cologne, Germany","Partner Site Cologne-Bonn, German Center for Infection Research (DZIF), 50935, Cologne, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Cologne, Institute of Virology, Faculty of Medicine and University Hospital Cologne, 50935, Cologne, Germany","institution_ids":["https://openalex.org/I180923762","https://openalex.org/I4210153755"]},{"raw_affiliation_string":"Partner Site Cologne-Bonn, German Center for Infection Research (DZIF), 50935, Cologne, Germany","institution_ids":["https://openalex.org/I4210115305"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014101140","display_name":"Francesca Incardona","orcid":"https://orcid.org/0000-0002-7386-8551"},"institutions":[{"id":"https://openalex.org/I4210145295","display_name":"European Society of Concurrent Enterprising Network","ror":"https://ror.org/04yvrj177","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210145295"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Incardona, Francesca","raw_affiliation_strings":["EuResist Network, 00152, Rome, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"EuResist Network, 00152, Rome, Italy","institution_ids":["https://openalex.org/I4210145295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032859619","display_name":"Ilaria Vicenti","orcid":"https://orcid.org/0000-0002-4306-2960"},"institutions":[{"id":"https://openalex.org/I102064193","display_name":"University of Siena","ror":"https://ror.org/01tevnk56","country_code":"IT","type":"education","lineage":["https://openalex.org/I102064193"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Vicenti, Ilaria","raw_affiliation_strings":["University of Siena, Department of Medical Biotechnologies, 53100, Siena, Italy e I-PRO, 00152, Rome, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Siena, Department of Medical Biotechnologies, 53100, Siena, Italy e I-PRO, 00152, Rome, Italy","institution_ids":["https://openalex.org/I102064193"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034073363","display_name":"Anders S\u00f6nnerborg","orcid":"https://orcid.org/0000-0001-8928-3374"},"institutions":[{"id":"https://openalex.org/I1335113835","display_name":"Karolinska University Hospital","ror":"https://ror.org/00m8d6786","country_code":"SE","type":"healthcare","lineage":["https://openalex.org/I1335113835"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"S\u00f6nnerborg, Anders","raw_affiliation_strings":["Karolinska University Hospital, Department of Infectious Diseases, 14186, Stockholm, Sweden","Karolinska Institutet, Division of Infectious Diseases, Department of Medicine Huddinge, 14152, Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Karolinska University Hospital, Department of Infectious Diseases, 14186, Stockholm, Sweden","institution_ids":["https://openalex.org/I1335113835"]},{"raw_affiliation_string":"Karolinska Institutet, Division of Infectious Diseases, Department of Medicine Huddinge, 14152, Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074420045","display_name":"Rolf Kaiser","orcid":"https://orcid.org/0000-0002-2640-2548"},"institutions":[{"id":"https://openalex.org/I180923762","display_name":"University of Cologne","ror":"https://ror.org/00rcxh774","country_code":"DE","type":"education","lineage":["https://openalex.org/I180923762"]},{"id":"https://openalex.org/I4210115305","display_name":"German Center for Infection Research","ror":"https://ror.org/028s4q594","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210115305","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I4210153755","display_name":"University Hospital Cologne","ror":"https://ror.org/05mxhda18","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210153755"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Kaiser, Rolf","raw_affiliation_strings":["University of Cologne, Institute of Virology, Faculty of Medicine and University Hospital Cologne, 50935, Cologne, Germany","Partner Site Cologne-Bonn, German Center for Infection Research (DZIF), 50935, Cologne, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Cologne, Institute of Virology, Faculty of Medicine and University Hospital Cologne, 50935, Cologne, Germany","institution_ids":["https://openalex.org/I180923762","https://openalex.org/I4210153755"]},{"raw_affiliation_string":"Partner Site Cologne-Bonn, German Center for Infection Research (DZIF), 50935, Cologne, Germany","institution_ids":["https://openalex.org/I4210115305"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002827275","display_name":"Laura Palagi","orcid":"https://orcid.org/0000-0002-9496-6097"},"institutions":[{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Palagi, Laura","raw_affiliation_strings":["Sapienza University of Rome, Department of Computer Control and Management Engineering Antonio Ruberti, 00185, Rome, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sapienza University of Rome, Department of Computer Control and Management Engineering Antonio Ruberti, 00185, Rome, Italy","institution_ids":["https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002487044","display_name":"Maurizio Zazzi","orcid":"https://orcid.org/0000-0002-0344-6281"},"institutions":[{"id":"https://openalex.org/I102064193","display_name":"University of Siena","ror":"https://ror.org/01tevnk56","country_code":"IT","type":"education","lineage":["https://openalex.org/I102064193"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Zazzi, Maurizio","raw_affiliation_strings":["University of Siena, Department of Medical Biotechnologies, 53100, Siena, Italy e I-PRO, 00152, Rome, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Siena, Department of Medical Biotechnologies, 53100, Siena, Italy e I-PRO, 00152, Rome, Italy","institution_ids":["https://openalex.org/I102064193"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023556977","display_name":"Thomas Lengauer","orcid":"https://orcid.org/0000-0003-3801-2640"},"institutions":[{"id":"https://openalex.org/I180923762","display_name":"University of Cologne","ror":"https://ror.org/00rcxh774","country_code":"DE","type":"education","lineage":["https://openalex.org/I180923762"]},{"id":"https://openalex.org/I4210109712","display_name":"Max Planck Institute for Informatics","ror":"https://ror.org/01w19ak89","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210109712"]},{"id":"https://openalex.org/I4210153755","display_name":"University Hospital Cologne","ror":"https://ror.org/05mxhda18","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210153755"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Lengauer, Thomas","raw_affiliation_strings":["Max Planck Institute for Informatics, Saarland Informatics Campus, Computational Biology, 66123, Saarbr\u00fccken, Germany","University of Cologne, Institute of Virology, Faculty of Medicine and University Hospital Cologne, 50935, Cologne, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institute for Informatics, Saarland Informatics Campus, Computational Biology, 66123, Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I4210109712"]},{"raw_affiliation_string":"University of Cologne, Institute of Virology, Faculty of Medicine and University Hospital Cologne, 50935, Cologne, Germany","institution_ids":["https://openalex.org/I180923762","https://openalex.org/I4210153755"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":9,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10526","display_name":"HIV/AIDS drug development and treatment","score":0.9783999919891357,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10082","display_name":"HIV/AIDS Research and Interventions","score":0.9423999786376953,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/discriminative-model","display_name":"Discriminative model","score":0.750788688659668},{"id":"https://openalex.org/keywords/human-immunodeficiency-virus","display_name":"Human immunodeficiency virus (HIV)","score":0.5916308164596558},{"id":"https://openalex.org/keywords/antiretroviral-therapy","display_name":"Antiretroviral therapy","score":0.5669349431991577},{"id":"https://openalex.org/keywords/wilcoxon-signed-rank-test","display_name":"Wilcoxon signed-rank test","score":0.5343581438064575},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.49056047201156616},{"id":"https://openalex.org/keywords/outcome","display_name":"Outcome (game theory)","score":0.47736668586730957},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.42467713356018066},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4006875455379486},{"id":"https://openalex.org/keywords/viral-load","display_name":"Viral load","score":0.39752012491226196},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.37901628017425537},{"id":"https://openalex.org/keywords/econometrics","display_name":"Econometrics","score":0.34372371435165405},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.3291625678539276},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.27039989829063416},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2626050114631653},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2579147517681122},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.17457610368728638},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1577165722846985},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13563475012779236},{"id":"https://openalex.org/keywords/mann\u2013whitney-u-test","display_name":"Mann\u2013Whitney U test","score":0.09528911113739014}],"concepts":[{"id":"https://openalex.org/C97931131","wikidata":"https://www.wikidata.org/wiki/Q5282087","display_name":"Discriminative model","level":2,"score":0.750788688659668},{"id":"https://openalex.org/C3013748606","wikidata":"https://www.wikidata.org/wiki/Q15787","display_name":"Human immunodeficiency virus (HIV)","level":2,"score":0.5916308164596558},{"id":"https://openalex.org/C2993143319","wikidata":"https://www.wikidata.org/wiki/Q583050","display_name":"Antiretroviral therapy","level":4,"score":0.5669349431991577},{"id":"https://openalex.org/C206041023","wikidata":"https://www.wikidata.org/wiki/Q1751970","display_name":"Wilcoxon signed-rank test","level":3,"score":0.5343581438064575},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.49056047201156616},{"id":"https://openalex.org/C148220186","wikidata":"https://www.wikidata.org/wiki/Q7111912","display_name":"Outcome (game theory)","level":2,"score":0.47736668586730957},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.42467713356018066},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4006875455379486},{"id":"https://openalex.org/C142462285","wikidata":"https://www.wikidata.org/wiki/Q2528140","display_name":"Viral load","level":3,"score":0.39752012491226196},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.37901628017425537},{"id":"https://openalex.org/C149782125","wikidata":"https://www.wikidata.org/wiki/Q160039","display_name":"Econometrics","level":1,"score":0.34372371435165405},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.3291625678539276},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.27039989829063416},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2626050114631653},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2579147517681122},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.17457610368728638},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1577165722846985},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13563475012779236},{"id":"https://openalex.org/C12868164","wikidata":"https://www.wikidata.org/wiki/Q1424533","display_name":"Mann\u2013Whitney U test","level":2,"score":0.09528911113739014},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C144237770","wikidata":"https://www.wikidata.org/wiki/Q747534","display_name":"Mathematical economics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2311.04846","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2311.04846","pdf_url":"https://arxiv.org/pdf/2311.04846","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"doi:10.48550/arxiv.2311.04846","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2311.04846","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2311.04846","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2311.04846","pdf_url":"https://arxiv.org/pdf/2311.04846","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[{"score":0.6499999761581421,"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4388555911.pdf"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1618905105","https://openalex.org/W1841236270","https://openalex.org/W1976632658","https://openalex.org/W1977852362","https://openalex.org/W1988215875","https://openalex.org/W2009467617","https://openalex.org/W2022249424","https://openalex.org/W2027898836","https://openalex.org/W2036836781","https://openalex.org/W2063159959","https://openalex.org/W2074877586","https://openalex.org/W2101549718","https://openalex.org/W2101654079","https://openalex.org/W2105712999","https://openalex.org/W2106720283","https://openalex.org/W2131218326","https://openalex.org/W2157867987","https://openalex.org/W2167557251","https://openalex.org/W2182593161","https://openalex.org/W2187165435","https://openalex.org/W2227151527","https://openalex.org/W2509030308","https://openalex.org/W2541643513","https://openalex.org/W2606694963","https://openalex.org/W2739715939","https://openalex.org/W2972331992","https://openalex.org/W3123294050","https://openalex.org/W3194787922","https://openalex.org/W4225374262","https://openalex.org/W4229081669","https://openalex.org/W4230873198","https://openalex.org/W4236190976","https://openalex.org/W4252684946","https://openalex.org/W4297008847","https://openalex.org/W4310953850","https://openalex.org/W4366829110"],"related_works":["https://openalex.org/W4389116644","https://openalex.org/W2153315159","https://openalex.org/W3103844505","https://openalex.org/W259157601","https://openalex.org/W4205463238","https://openalex.org/W2761785940","https://openalex.org/W1482209366","https://openalex.org/W2110523656","https://openalex.org/W2521627374","https://openalex.org/W2981954115"],"abstract_inverted_index":{"Motivation:":[0],"In":[1],"predicting":[2],"HIV":[3,134,155],"therapy":[4],"outcomes,":[5],"a":[6,57,76,95],"critical":[7],"clinical":[8],"question":[9],"is":[10,174,180],"whether":[11,30],"using":[12,84],"historical":[13,31,111,140,172],"information":[14,112,173],"can":[15,52],"enhance":[16],"predictive":[17,115],"capabilities":[18],"compared":[19],"with":[20,81,94],"current":[21],"or":[22],"latest":[23],"available":[24],"data":[25],"analysis.":[26],"This":[27],"study":[28],"analyses":[29],"knowledge,":[32],"which":[33],"includes":[34],"viral":[35,49],"mutations":[36],"detected":[37],"in":[38,150],"all":[39],"genotypic":[40],"tests":[41],"before":[42],"therapy,":[43],"their":[44],"temporal":[45,148],"occurrence,":[46],"and":[47,67],"concomitant":[48],"load":[50],"measurements,":[51],"bring":[53],"improvements.":[54],"We":[55,74],"introduce":[56],"method":[58],"to":[59,129],"weigh":[60],"mutations,":[61,151],"considering":[62],"the":[63,68,101,124,145],"previously":[64],"enumerated":[65],"factors":[66],"reference":[69],"mutation-drug":[70],"Stanford":[71],"resistance":[72],"tables.":[73],"compare":[75],"model":[77],"encompassing":[78],"history":[79],"(H)":[80],"one":[82],"not":[83],"it":[85],"(NH).":[86],"Results:":[87],"The":[88,120,142],"H-model":[89,125],"demonstrates":[90],"superior":[91],"discriminative":[92],"ability,":[93],"higher":[96],"ROC-AUC":[97],"score":[98],"(76.34%)":[99],"than":[100],"NH-model":[102],"(74.98%).":[103],"Significant":[104],"Wilcoxon":[105],"test":[106],"results":[107],"confirm":[108],"that":[109,163],"incorporating":[110],"improves":[113],"consistently":[114],"accuracy":[116,165],"for":[117],"treatment":[118],"outcomes.":[119],"better":[121],"performance":[122],"of":[123,132,147],"might":[126],"be":[127],"attributed":[128],"its":[130],"consideration":[131],"latent":[133],"reservoirs,":[135],"probably":[136],"obtained":[137],"when":[138,170],"leveraging":[139],"information.":[141],"findings":[143],"emphasize":[144],"importance":[146],"dynamics":[149],"offering":[152],"insights":[153],"into":[154],"infection":[156],"complexities.":[157],"However,":[158],"our":[159],"result":[160],"also":[161],"shows":[162],"prediction":[164],"remains":[166],"relatively":[167],"high":[168],"even":[169],"no":[171],"available.":[175,181],"Supplementary":[176,178],"information:":[177],"material":[179]},"counts_by_year":[],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
