{"id":"https://openalex.org/W4360892420","doi":"https://doi.org/10.48550/arxiv.2303.13451","title":"Development and validation of a natural language processing algorithm to pseudonymize documents in the context of a clinical data warehouse","display_name":"Development and validation of a natural language processing algorithm to pseudonymize documents in the context of a clinical data warehouse","publication_year":2023,"publication_date":"2023-03-23","ids":{"openalex":"https://openalex.org/W4360892420","doi":"https://doi.org/10.48550/arxiv.2303.13451"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2303.13451","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2303.13451","pdf_url":"https://arxiv.org/pdf/2303.13451","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2303.13451","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056834851","display_name":"Xavier Tannier","orcid":"https://orcid.org/0000-0002-2452-8868"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Tannier, Xavier","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019970289","display_name":"Perceval Wajsb\u00fcrt","orcid":"https://orcid.org/0000-0002-9746-9993"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wajsb\u00fcrt, Perceval","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039504658","display_name":"Alice Calliger","orcid":"https://orcid.org/0000-0002-5767-313X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Calliger, Alice","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083618696","display_name":"Basile Dura","orcid":"https://orcid.org/0000-0002-8315-4050"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dura, Basile","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045607015","display_name":"Alexandre Mouchet","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mouchet, Alexandre","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107431691","display_name":"Martin Hilka","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hilka, Martin","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5059890101","display_name":"Romain Bey","orcid":"https://orcid.org/0000-0002-6413-5188"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bey, Romain","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5056834851"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9797999858856201,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9797999858856201,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11719","display_name":"Data Quality and Management","score":0.9703999757766724,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9287999868392944,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8169024586677551},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5885491967201233},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5811357498168945},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5784772634506226},{"id":"https://openalex.org/keywords/data-warehouse","display_name":"Data warehouse","score":0.5611560940742493},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5594778656959534},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.47729408740997314},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.47682589292526245},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.4563766419887543},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.45265477895736694},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.42671698331832886},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2803148031234741},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11857074499130249}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8169024586677551},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5885491967201233},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5811357498168945},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5784772634506226},{"id":"https://openalex.org/C135572916","wikidata":"https://www.wikidata.org/wiki/Q193351","display_name":"Data warehouse","level":2,"score":0.5611560940742493},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5594778656959534},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.47729408740997314},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.47682589292526245},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.4563766419887543},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.45265477895736694},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.42671698331832886},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2803148031234741},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11857074499130249},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2303.13451","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2303.13451","pdf_url":"https://arxiv.org/pdf/2303.13451","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"doi:10.48550/arxiv.2303.13451","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2303.13451","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2303.13451","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2303.13451","pdf_url":"https://arxiv.org/pdf/2303.13451","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2606446052","https://openalex.org/W2036021480","https://openalex.org/W3195777957","https://openalex.org/W2382668227","https://openalex.org/W2348482143","https://openalex.org/W2024584030","https://openalex.org/W1603675680","https://openalex.org/W1983668675","https://openalex.org/W2343406053","https://openalex.org/W3104168426"],"abstract_inverted_index":{"The":[0,30],"objective":[1],"of":[2,11,13,48,60,72,79,90,106,108],"this":[3,42],"study":[4,31],"is":[5],"to":[6,18,21,76,117],"address":[7],"the":[8,33,46,49,88,120],"critical":[9],"issue":[10],"de-identification":[12],"clinical":[14,73],"reports":[15],"in":[16,36,41,55,123],"order":[17],"allow":[19],"access":[20],"data":[22],"for":[23],"research":[24],"purposes,":[25],"while":[26],"ensuring":[27],"patient":[28],"privacy.":[29],"highlights":[32],"difficulties":[34],"faced":[35],"sharing":[37],"tools":[38],"and":[39,44,82,114,140],"resources":[40],"domain":[43],"presents":[45],"experience":[47],"Greater":[50],"Paris":[51],"University":[52],"Hospitals":[53],"(AP-HP)":[54],"implementing":[56],"a":[57,70,84,91,125,143],"systematic":[58],"pseudonymization":[59],"text":[61],"documents":[62,74],"from":[63],"its":[64],"Clinical":[65],"Data":[66],"Warehouse.":[67],"We":[68,110,137],"annotated":[69],"corpus":[71],"according":[75],"12":[77],"types":[78],"identifying":[80],"entities,":[81],"built":[83],"hybrid":[85],"system,":[86],"merging":[87],"results":[89,101],"deep":[92],"learning":[93],"model":[94],"as":[95,97],"well":[96],"manual":[98],"rules.":[99],"Our":[100],"show":[102],"an":[103],"overall":[104],"performance":[105],"0.99":[107],"F1-score.":[109],"discuss":[111],"implementation":[112],"choices":[113],"present":[115],"experiments":[116],"better":[118],"understand":[119],"effort":[121],"involved":[122],"such":[124],"task,":[126],"including":[127],"dataset":[128],"size,":[129],"document":[130],"types,":[131],"language":[132],"models,":[133],"or":[134],"rule":[135],"addition.":[136],"share":[138],"guidelines":[139],"code":[141],"under":[142],"3-Clause":[144],"BSD":[145],"license.":[146]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-02-09T09:26:11.010843","created_date":"2023-03-25T00:00:00"}
