{"id":"https://openalex.org/W4317438970","doi":"https://doi.org/10.48550/arxiv.2301.06304","title":"LYSTO: The Lymphocyte Assessment Hackathon and Benchmark Dataset","display_name":"LYSTO: The Lymphocyte Assessment Hackathon and Benchmark Dataset","publication_year":2023,"publication_date":"2023-01-16","ids":{"openalex":"https://openalex.org/W4317438970","doi":"https://doi.org/10.48550/arxiv.2301.06304"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2301.06304","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2301.06304","pdf_url":"https://arxiv.org/pdf/2301.06304","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2301.06304","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067317933","display_name":"Yiping Jiao","orcid":"https://orcid.org/0000-0002-0787-3424"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jiao, Yiping","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081003438","display_name":"Jeroen van der Laak","orcid":"https://orcid.org/0000-0001-7982-0754"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"van der Laak, Jeroen","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038615871","display_name":"Shadi Albarqouni","orcid":"https://orcid.org/0000-0003-2157-2211"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Albarqouni, Shadi","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100418968","display_name":"Zhang Li","orcid":"https://orcid.org/0000-0003-1659-0466"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Li, Zhang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101628586","display_name":"Tao Tan","orcid":"https://orcid.org/0000-0002-5573-1105"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tan, Tao","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081010150","display_name":"Abhir Bhalerao","orcid":"https://orcid.org/0000-0001-8830-329X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bhalerao, Abhir","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048981603","display_name":"Jiabo Ma","orcid":"https://orcid.org/0000-0001-8532-4466"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ma, Jiabo","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114025983","display_name":"Jiamei Sun","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sun, Jiamei","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054697197","display_name":"Johnathan Pocock","orcid":"https://orcid.org/0000-0002-2866-981X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Pocock, Johnathan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057583165","display_name":"Josien P. W. Pluim","orcid":"https://orcid.org/0000-0001-7327-9178"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Pluim, Josien P. W.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026321652","display_name":"Navid Alemi Koohbanani","orcid":"https://orcid.org/0000-0001-6929-7461"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Koohbanani, Navid Alemi","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056078104","display_name":"Raja Muhammad Saad Bashir","orcid":"https://orcid.org/0000-0002-8984-6963"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bashir, Raja Muhammad Saad","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041645982","display_name":"Shan E Ahmed Raza","orcid":"https://orcid.org/0000-0002-1097-1738"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Raza, Shan E Ahmed","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101454444","display_name":"Sibo Liu","orcid":"https://orcid.org/0009-0007-9850-319X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Liu, Sibo","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034385371","display_name":"Simon Graham","orcid":"https://orcid.org/0000-0002-2214-8212"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Graham, Simon","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007289757","display_name":"Suzanne C. Wetstein","orcid":"https://orcid.org/0000-0001-8699-5739"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wetstein, Suzanne","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007545621","display_name":"Syed Ali Khurram","orcid":"https://orcid.org/0000-0002-0378-9380"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Khurram, Syed Ali","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044209397","display_name":"Thomas J. Watson","orcid":"https://orcid.org/0000-0002-3282-494X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Watson, Thomas","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069179055","display_name":"Nasir Rajpoot","orcid":"https://orcid.org/0000-0002-4706-1308"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rajpoot, Nasir","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008103968","display_name":"Mitko Veta","orcid":"https://orcid.org/0000-0003-1711-3098"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Veta, Mitko","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5002905948","display_name":"Francesco Ciompi","orcid":"https://orcid.org/0000-0001-8327-9606"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ciompi, Francesco","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13280","display_name":"Biomedical and Engineering Education","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13280","display_name":"Biomedical and Engineering Education","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9908000230789185,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10613","display_name":"Virus-based gene therapy research","score":0.9878000020980835,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5706194639205933},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5649879574775696},{"id":"https://openalex.org/keywords/digital-pathology","display_name":"Digital pathology","score":0.5296587347984314},{"id":"https://openalex.org/keywords/prostate-cancer","display_name":"Prostate cancer","score":0.45953866839408875},{"id":"https://openalex.org/keywords/lymphocyte","display_name":"Lymphocyte","score":0.43759018182754517},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.4092766046524048},{"id":"https://openalex.org/keywords/medical-physics","display_name":"Medical physics","score":0.3575894236564636},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34317103028297424},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.33896851539611816},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.3297990560531616},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.17395320534706116}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5706194639205933},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5649879574775696},{"id":"https://openalex.org/C2777522853","wikidata":"https://www.wikidata.org/wiki/Q5276128","display_name":"Digital pathology","level":2,"score":0.5296587347984314},{"id":"https://openalex.org/C2780192828","wikidata":"https://www.wikidata.org/wiki/Q181257","display_name":"Prostate cancer","level":3,"score":0.45953866839408875},{"id":"https://openalex.org/C2777761686","wikidata":"https://www.wikidata.org/wiki/Q715347","display_name":"Lymphocyte","level":2,"score":0.43759018182754517},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.4092766046524048},{"id":"https://openalex.org/C19527891","wikidata":"https://www.wikidata.org/wiki/Q1120908","display_name":"Medical physics","level":1,"score":0.3575894236564636},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34317103028297424},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.33896851539611816},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.3297990560531616},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.17395320534706116},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2301.06304","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2301.06304","pdf_url":"https://arxiv.org/pdf/2301.06304","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},{"id":"doi:10.48550/arxiv.2301.06304","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2301.06304","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2301.06304","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2301.06304","pdf_url":"https://arxiv.org/pdf/2301.06304","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5113281195","display_name":"EXtreme-scale Analytics via Multimodal Ontology Discovery & Enhancement","funder_award_id":"825292","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321013","display_name":"Radboud Universiteit","ror":"https://ror.org/016xsfp80"},{"id":"https://openalex.org/F4320322725","display_name":"China Scholarship Council","ror":"https://ror.org/04atp4p48"},{"id":"https://openalex.org/F4320323698","display_name":"Radboud Universitair Medisch Centrum","ror":"https://ror.org/05wg1m734"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2378211422","https://openalex.org/W2745001401","https://openalex.org/W4321353415","https://openalex.org/W2130974462","https://openalex.org/W2028665553","https://openalex.org/W2086519370","https://openalex.org/W972276598","https://openalex.org/W2087343574","https://openalex.org/W4246352526","https://openalex.org/W2121910908"],"abstract_inverted_index":{"We":[0,138],"introduce":[1],"LYSTO,":[2],"the":[3,13,27,75,78,82,86,90,102,119,143,155],"Lymphocyte":[4],"Assessment":[5],"Hackathon,":[6],"which":[7,114],"was":[8,115,158],"held":[9],"in":[10,17,31,34,54,182,185],"conjunction":[11],"with":[12,44,170],"MICCAI":[14],"2019":[15],"Conference":[16],"Shenzen":[18],"(China).":[19],"The":[20],"competition":[21],"required":[22],"participants":[23,59,144],"to":[24,66,147],"automatically":[25],"assess":[26],"number":[28,179],"of":[29,37,81,110,118,136,142,180],"lymphocytes,":[30],"particular":[32],"T-cells,":[33],"histopathological":[35],"images":[36],"colon,":[38],"breast,":[39],"and":[40,46,77,89,133,197],"prostate":[41],"cancer":[42,112],"stained":[43],"CD3":[45],"CD8":[47],"immunohistochemistry.":[48],"Differently":[49],"from":[50],"other":[51],"challenges":[52],"setup":[53],"medical":[55],"image":[56],"analysis,":[57],"LYSTO":[58,157,175,187],"were":[60,145],"solely":[61],"given":[62],"a":[63,125,134,161,178,190],"few":[64],"hours":[65],"address":[67],"this":[68,71],"problem.":[69],"In":[70],"paper,":[72],"we":[73,84,94,99],"describe":[74,85],"goal":[76],"multi-phase":[79],"organization":[80],"hackathon;":[83],"proposed":[87],"methods":[88,104,132],"on-site":[91],"results.":[92],"Additionally,":[93],"present":[95],"post-competition":[96],"results":[97],"where":[98],"show":[100,139],"how":[101],"presented":[103,131],"perform":[105],"on":[106,127,166],"an":[107,171],"independent":[108],"set":[109],"lung":[111],"slides,":[113],"not":[116],"part":[117],"initial":[120],"competition,":[121],"as":[122,124,160],"well":[123],"comparison":[126],"lymphocyte":[128,152,183],"assessment":[129,184],"between":[130],"panel":[135],"pathologists.":[137],"that":[140],"some":[141],"capable":[146],"achieve":[148],"pathologist-level":[149],"performance":[150],"at":[151,203],"assessment.":[153],"After":[154],"hackathon,":[156],"left":[159],"lightweight":[162],"plug-and-play":[163],"benchmark":[164],"dataset":[165],"grand-challenge":[167],"website,":[168],"together":[169],"automatic":[172],"evaluation":[173],"platform.":[174],"has":[176],"supported":[177],"research":[181],"oncology.":[186],"will":[188],"be":[189],"long-lasting":[191],"educational":[192],"challenge":[193],"for":[194],"deep":[195],"learning":[196],"digital":[198],"pathology,":[199],"it":[200],"is":[201],"available":[202],"https://lysto.grand-challenge.org/.":[204]},"counts_by_year":[],"updated_date":"2026-07-16T13:24:37.021932","created_date":"2025-10-10T00:00:00"}
