{"id":"https://openalex.org/W4315589160","doi":"https://doi.org/10.48550/arxiv.2301.03531","title":"Leveraging Contextual Relatedness to Identify Suicide Documentation in Clinical Notes through Zero Shot Learning","display_name":"Leveraging Contextual Relatedness to Identify Suicide Documentation in Clinical Notes through Zero Shot Learning","publication_year":2023,"publication_date":"2023-01-09","ids":{"openalex":"https://openalex.org/W4315589160","doi":"https://doi.org/10.48550/arxiv.2301.03531"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2301.03531","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2301.03531","pdf_url":"https://arxiv.org/pdf/2301.03531","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2301.03531","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034770262","display_name":"T. Elizabeth Workman","orcid":"https://orcid.org/0000-0002-2273-078X"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Workman, Terri Elizabeth","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041298160","display_name":"Joseph L. Goulet","orcid":"https://orcid.org/0000-0002-0842-804X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Goulet, Joseph L.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038171056","display_name":"Cynthia Brandt","orcid":"https://orcid.org/0000-0001-8179-1796"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Brandt, Cynthia A.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031684005","display_name":"Allison R. Warren","orcid":"https://orcid.org/0000-0003-3621-3617"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Warren, Allison R.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018914044","display_name":"Jacob Eleazer","orcid":"https://orcid.org/0000-0002-2228-7933"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Eleazer, Jacob","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062616777","display_name":"Melissa Skanderson","orcid":"https://orcid.org/0000-0002-5539-8680"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Skanderson, Melissa","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037132558","display_name":"Luke Lindemann","orcid":"https://orcid.org/0000-0003-2675-5244"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lindemann, Luke","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010466813","display_name":"John R. Blosnich","orcid":"https://orcid.org/0000-0001-7663-3638"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Blosnich, John R.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052913909","display_name":"John O Leary","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Leary, John O","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5019710600","display_name":"Qing Zeng Treitler","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Treitler, Qing Zeng","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5034770262"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10376","display_name":"Suicide and Self-Harm Studies","score":0.9312999844551086,"subfield":{"id":"https://openalex.org/subfields/3203","display_name":"Clinical Psychology"},"field":{"id":"https://openalex.org/fields/32","display_name":"Psychology"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T10376","display_name":"Suicide and Self-Harm Studies","score":0.9312999844551086,"subfield":{"id":"https://openalex.org/subfields/3203","display_name":"Clinical Psychology"},"field":{"id":"https://openalex.org/fields/32","display_name":"Psychology"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/suicidal-ideation","display_name":"Suicidal ideation","score":0.7502344250679016},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6286836862564087},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5705540180206299},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.564041256904602},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.5533867478370667},{"id":"https://openalex.org/keywords/veterans-affairs","display_name":"Veterans Affairs","score":0.5266245007514954},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.482128381729126},{"id":"https://openalex.org/keywords/string","display_name":"String (physics)","score":0.4788058400154114},{"id":"https://openalex.org/keywords/harm","display_name":"Harm","score":0.44602715969085693},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.4420841336250305},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4382319748401642},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4239058494567871},{"id":"https://openalex.org/keywords/poison-control","display_name":"Poison control","score":0.30763524770736694},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.29594042897224426},{"id":"https://openalex.org/keywords/suicide-prevention","display_name":"Suicide prevention","score":0.24543699622154236},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.23411205410957336},{"id":"https://openalex.org/keywords/medical-emergency","display_name":"Medical emergency","score":0.15553471446037292},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1339036524295807},{"id":"https://openalex.org/keywords/social-psychology","display_name":"Social psychology","score":0.10404813289642334}],"concepts":[{"id":"https://openalex.org/C2776641880","wikidata":"https://www.wikidata.org/wiki/Q944142","display_name":"Suicidal ideation","level":4,"score":0.7502344250679016},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6286836862564087},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5705540180206299},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.564041256904602},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.5533867478370667},{"id":"https://openalex.org/C2775969662","wikidata":"https://www.wikidata.org/wiki/Q7923600","display_name":"Veterans Affairs","level":2,"score":0.5266245007514954},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.482128381729126},{"id":"https://openalex.org/C157486923","wikidata":"https://www.wikidata.org/wiki/Q1376436","display_name":"String (physics)","level":2,"score":0.4788058400154114},{"id":"https://openalex.org/C2777363581","wikidata":"https://www.wikidata.org/wiki/Q15098235","display_name":"Harm","level":2,"score":0.44602715969085693},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.4420841336250305},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4382319748401642},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4239058494567871},{"id":"https://openalex.org/C3017944768","wikidata":"https://www.wikidata.org/wiki/Q1450463","display_name":"Poison control","level":2,"score":0.30763524770736694},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.29594042897224426},{"id":"https://openalex.org/C526869908","wikidata":"https://www.wikidata.org/wiki/Q3298118","display_name":"Suicide prevention","level":3,"score":0.24543699622154236},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.23411205410957336},{"id":"https://openalex.org/C545542383","wikidata":"https://www.wikidata.org/wiki/Q2751242","display_name":"Medical emergency","level":1,"score":0.15553471446037292},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1339036524295807},{"id":"https://openalex.org/C77805123","wikidata":"https://www.wikidata.org/wiki/Q161272","display_name":"Social psychology","level":1,"score":0.10404813289642334},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.0},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0},{"id":"https://openalex.org/C37914503","wikidata":"https://www.wikidata.org/wiki/Q156495","display_name":"Mathematical physics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2301.03531","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2301.03531","pdf_url":"https://arxiv.org/pdf/2301.03531","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"doi:10.48550/arxiv.2301.03531","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2301.03531","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2301.03531","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2301.03531","pdf_url":"https://arxiv.org/pdf/2301.03531","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.7099999785423279,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G2514801114","display_name":null,"funder_award_id":"IIR 18-035","funder_id":"https://openalex.org/F4320306127","funder_display_name":"U.S. Department of Veterans Affairs"},{"id":"https://openalex.org/G7361812484","display_name":null,"funder_award_id":"UL1TR001876","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G7795937142","display_name":null,"funder_award_id":"UL1TR001876","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8752438895","display_name":null,"funder_award_id":"TR001876","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306127","display_name":"U.S. Department of Veterans Affairs","ror":"https://ror.org/05rsv9s98"},{"id":"https://openalex.org/F4320309610","display_name":"Health Services Research and Development","ror":"https://ror.org/05rsv9s98"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4315589160.pdf"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2513361055","https://openalex.org/W2971127268","https://openalex.org/W2087473612","https://openalex.org/W2606561216","https://openalex.org/W4212794616","https://openalex.org/W4282047417","https://openalex.org/W2908601854","https://openalex.org/W2793832220","https://openalex.org/W3090796280","https://openalex.org/W2087586941"],"abstract_inverted_index":{"Identifying":[0],"suicidality":[1,53,97,204],"including":[2],"suicidal":[3],"ideation,":[4],"attempts,":[5],"and":[6,86,146,164],"risk":[7],"factors":[8],"in":[9,14,54,158],"electronic":[10],"health":[11],"record":[12],"data":[13,60],"clinical":[15,55,69],"notes":[16,56,70,181],"is":[17,22],"difficult.":[18],"A":[19,88,116],"major":[20],"difficulty":[21],"the":[23,29,37,93,106,113,124,141,155,178],"lack":[24],"of":[25,32,41,83,96,160],"training":[26,75,108,125,143],"samples":[27],"given":[28],"small":[30],"number":[31,40],"true":[33],"positive":[34,107,165],"instances":[35],"among":[36],"increasingly":[38],"large":[39],"patients":[42],"being":[43],"screened.":[44],"This":[45,198],"paper":[46],"describes":[47],"a":[48,129,174,185],"novel":[49],"methodology":[50,179],"that":[51,191],"identifies":[52],"by":[57,104,122],"addressing":[58],"this":[59],"sparsity":[61],"issue":[62],"through":[63],"zero-shot":[64],"learning.":[65],"U.S.":[66],"Veterans":[67],"Affairs":[68],"served":[71],"as":[72],"data.":[73],"The":[74,149],"dataset":[76,144],"label":[77,95],"was":[78,98,120],"determined":[79],"using":[80,140],"diagnostic":[81],"codes":[82],"suicide":[84],"attempt":[85],"self-harm.":[87],"base":[89,114],"string":[90],"associated":[91,183],"with":[92,184,194],"target":[94],"used":[99],"to":[100,110,128],"provide":[101],"auxiliary":[102],"information":[103],"narrowing":[105],"cases":[109],"those":[111],"containing":[112],"string.":[115],"deep":[117,137],"neural":[118,138],"network":[119,139],"trained":[121,135],"mapping":[123],"documents":[126],"contents":[127],"semantic":[130],"space.":[131],"For":[132],"comparison,":[133],"we":[134],"another":[136],"identical":[142],"labels":[145],"bag-of-words":[147],"features.":[148],"zero":[150],"shot":[151],"learning":[152],"model":[153,157],"outperformed":[154],"baseline":[156],"terms":[159],"AUC,":[161],"sensitivity,":[162],"specificity,":[163],"predictive":[166],"value":[167],"at":[168],"multiple":[169],"probability":[170,176],"thresholds.":[171],"In":[172],"applying":[173],"0.90":[175],"threshold,":[177],"identified":[180],"not":[182],"relevant":[186],"ICD":[187],"10":[188],"CM":[189],"code":[190],"documented":[192],"suicidality,":[193],"94":[195],"percent":[196],"accuracy.":[197],"new":[199],"method":[200],"can":[201],"effectively":[202],"identify":[203],"without":[205],"requiring":[206],"manual":[207],"annotation.":[208]},"counts_by_year":[{"year":2024,"cited_by_count":2}],"updated_date":"2026-04-11T08:14:18.477133","created_date":"2025-10-10T00:00:00"}
