{"id":"https://openalex.org/W4292957200","doi":"https://doi.org/10.48550/arxiv.2208.09652","title":"Unsupervisedly Prompting AlphaFold2 for Few-Shot Learning of Accurate Folding Landscape and Protein Structure Prediction","display_name":"Unsupervisedly Prompting AlphaFold2 for Few-Shot Learning of Accurate Folding Landscape and Protein Structure Prediction","publication_year":2022,"publication_date":"2022-08-20","ids":{"openalex":"https://openalex.org/W4292957200","doi":"https://doi.org/10.48550/arxiv.2208.09652"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2208.09652","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2208.09652","pdf_url":"https://arxiv.org/pdf/2208.09652","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2208.09652","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100433211","display_name":"Jun Zhang","orcid":"https://orcid.org/0000-0002-8760-6747"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Zhang, Jun","raw_affiliation_strings":["Changping Laboratory, Beijing 102200, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Changping Laboratory, Beijing 102200, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101570464","display_name":"Sirui Liu","orcid":"https://orcid.org/0000-0002-9369-6291"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Liu, Sirui","raw_affiliation_strings":["Changping Laboratory, Beijing 102200, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Changping Laboratory, Beijing 102200, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052393347","display_name":"Mengyun Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I2250955327","display_name":"Huawei Technologies (China)","ror":"https://ror.org/00cmhce21","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250955327"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chen, Mengyun","raw_affiliation_strings":["Huawei Hangzhou Research Institute, Huawei Technologies Co. Ltd., Hangzhou 310051, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Huawei Hangzhou Research Institute, Huawei Technologies Co. Ltd., Hangzhou 310051, China","institution_ids":["https://openalex.org/I2250955327"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091291587","display_name":"Haotian Chu","orcid":null},"institutions":[{"id":"https://openalex.org/I2250955327","display_name":"Huawei Technologies (China)","ror":"https://ror.org/00cmhce21","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250955327"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chu, Haotian","raw_affiliation_strings":["Huawei Hangzhou Research Institute, Huawei Technologies Co. Ltd., Hangzhou 310051, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Huawei Hangzhou Research Institute, Huawei Technologies Co. Ltd., Hangzhou 310051, China","institution_ids":["https://openalex.org/I2250955327"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115694841","display_name":"Min Wang","orcid":"https://orcid.org/0000-0003-2052-199X"},"institutions":[{"id":"https://openalex.org/I2250955327","display_name":"Huawei Technologies (China)","ror":"https://ror.org/00cmhce21","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250955327"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wang, Min","raw_affiliation_strings":["Huawei Hangzhou Research Institute, Huawei Technologies Co. Ltd., Hangzhou 310051, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Huawei Hangzhou Research Institute, Huawei Technologies Co. Ltd., Hangzhou 310051, China","institution_ids":["https://openalex.org/I2250955327"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100699858","display_name":"Zidong Wang","orcid":"https://orcid.org/0000-0002-9576-7401"},"institutions":[{"id":"https://openalex.org/I2250955327","display_name":"Huawei Technologies (China)","ror":"https://ror.org/00cmhce21","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250955327"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wang, Zidong","raw_affiliation_strings":["Huawei Hangzhou Research Institute, Huawei Technologies Co. Ltd., Hangzhou 310051, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Huawei Hangzhou Research Institute, Huawei Technologies Co. Ltd., Hangzhou 310051, China","institution_ids":["https://openalex.org/I2250955327"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022258522","display_name":"Jialiang Yu","orcid":"https://orcid.org/0000-0002-3439-6635"},"institutions":[{"id":"https://openalex.org/I2250955327","display_name":"Huawei Technologies (China)","ror":"https://ror.org/00cmhce21","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250955327"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu, Jialiang","raw_affiliation_strings":["Huawei Hangzhou Research Institute, Huawei Technologies Co. Ltd., Hangzhou 310051, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Huawei Hangzhou Research Institute, Huawei Technologies Co. Ltd., Hangzhou 310051, China","institution_ids":["https://openalex.org/I2250955327"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072395322","display_name":"Ningxi Ni","orcid":null},"institutions":[{"id":"https://openalex.org/I2250955327","display_name":"Huawei Technologies (China)","ror":"https://ror.org/00cmhce21","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250955327"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ni, Ningxi","raw_affiliation_strings":["Huawei Hangzhou Research Institute, Huawei Technologies Co. Ltd., Hangzhou 310051, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Huawei Hangzhou Research Institute, Huawei Technologies Co. Ltd., Hangzhou 310051, China","institution_ids":["https://openalex.org/I2250955327"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100346625","display_name":"Yu Fan","orcid":"https://orcid.org/0000-0002-9917-593X"},"institutions":[{"id":"https://openalex.org/I2250955327","display_name":"Huawei Technologies (China)","ror":"https://ror.org/00cmhce21","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250955327"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu, Fan","raw_affiliation_strings":["Huawei Hangzhou Research Institute, Huawei Technologies Co. Ltd., Hangzhou 310051, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Huawei Hangzhou Research Institute, Huawei Technologies Co. Ltd., Hangzhou 310051, China","institution_ids":["https://openalex.org/I2250955327"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108818330","display_name":"Diqing Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I2250955327","display_name":"Huawei Technologies (China)","ror":"https://ror.org/00cmhce21","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250955327"]},{"id":"https://openalex.org/I4210102541","display_name":"Shenzhen Bay Laboratory","ror":"https://ror.org/00sdcjz77","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210102541"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chen, Diqing","raw_affiliation_strings":["Huawei Hangzhou Research Institute, Huawei Technologies Co. Ltd., Hangzhou 310051, China","Institute of Systems and Physical Biology, Shenzhen Bay Laboratory, Shenzhen 518055, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Huawei Hangzhou Research Institute, Huawei Technologies Co. Ltd., Hangzhou 310051, China","institution_ids":["https://openalex.org/I2250955327"]},{"raw_affiliation_string":"Institute of Systems and Physical Biology, Shenzhen Bay Laboratory, Shenzhen 518055, China","institution_ids":["https://openalex.org/I4210102541"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001975694","display_name":"Yi Yang","orcid":"https://orcid.org/0000-0002-5599-0975"},"institutions":[{"id":"https://openalex.org/I4210102541","display_name":"Shenzhen Bay Laboratory","ror":"https://ror.org/00sdcjz77","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210102541"]},{"id":"https://openalex.org/I2250955327","display_name":"Huawei Technologies (China)","ror":"https://ror.org/00cmhce21","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250955327"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang, Yi Isaac","raw_affiliation_strings":["Institute of Systems and Physical Biology, Shenzhen Bay Laboratory, Shenzhen 518055, China","Huawei Hangzhou Research Institute, Huawei Technologies Co. Ltd., Hangzhou 310051, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Systems and Physical Biology, Shenzhen Bay Laboratory, Shenzhen 518055, China","institution_ids":["https://openalex.org/I4210102541"]},{"raw_affiliation_string":"Huawei Hangzhou Research Institute, Huawei Technologies Co. Ltd., Hangzhou 310051, China","institution_ids":["https://openalex.org/I2250955327"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071969691","display_name":"Boxin Xue","orcid":null},"institutions":[{"id":"https://openalex.org/I4210116048","display_name":"Beijing National Laboratory for Molecular Sciences","ror":"https://ror.org/02601yx74","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210116048"]},{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xue, Boxin","raw_affiliation_strings":["Beijing National Laboratory for Molecular Sciences, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing National Laboratory for Molecular Sciences, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China","institution_ids":["https://openalex.org/I4210116048","https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011421057","display_name":"Lijiang Yang","orcid":"https://orcid.org/0000-0002-8175-0609"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210116048","display_name":"Beijing National Laboratory for Molecular Sciences","ror":"https://ror.org/02601yx74","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210116048"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang, Lijiang","raw_affiliation_strings":["Beijing National Laboratory for Molecular Sciences, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing National Laboratory for Molecular Sciences, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China","institution_ids":["https://openalex.org/I4210116048","https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010274839","display_name":"Yuan Liu","orcid":"https://orcid.org/0000-0002-1156-7673"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liu, Yuan","raw_affiliation_strings":["Department of Chemical Biology, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemical Biology, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051732177","display_name":"Yi Qin Gao","orcid":"https://orcid.org/0000-0002-4309-9376"},"institutions":[{"id":"https://openalex.org/I4210102541","display_name":"Shenzhen Bay Laboratory","ror":"https://ror.org/00sdcjz77","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210102541"]},{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210116048","display_name":"Beijing National Laboratory for Molecular Sciences","ror":"https://ror.org/02601yx74","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210116048"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Gao, Yi Qin","raw_affiliation_strings":["Changping Laboratory, Beijing 102200, China","Biomedical Pioneering Innovation Center, Peking University, Beijing 100871, China","Beijing National Laboratory for Molecular Sciences, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China","Institute of Systems and Physical Biology, Shenzhen Bay Laboratory, Shenzhen 518055, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Changping Laboratory, Beijing 102200, China","institution_ids":[]},{"raw_affiliation_string":"Biomedical Pioneering Innovation Center, Peking University, Beijing 100871, China","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Beijing National Laboratory for Molecular Sciences, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China","institution_ids":["https://openalex.org/I4210116048","https://openalex.org/I20231570"]},{"raw_affiliation_string":"Institute of Systems and Physical Biology, Shenzhen Bay Laboratory, Shenzhen 518055, China","institution_ids":["https://openalex.org/I4210102541"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100433211"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.986299991607666,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6723964214324951},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6002370715141296},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.5999429821968079},{"id":"https://openalex.org/keywords/generative-grammar","display_name":"Generative grammar","score":0.5548904538154602},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5013494491577148},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.49907469749450684},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.49074825644493103},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.45034167170524597},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.34732091426849365},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13954564929008484},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10501980781555176}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6723964214324951},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6002370715141296},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.5999429821968079},{"id":"https://openalex.org/C39890363","wikidata":"https://www.wikidata.org/wiki/Q36108","display_name":"Generative grammar","level":2,"score":0.5548904538154602},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5013494491577148},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.49907469749450684},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.49074825644493103},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.45034167170524597},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.34732091426849365},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13954564929008484},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10501980781555176},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2208.09652","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2208.09652","pdf_url":"https://arxiv.org/pdf/2208.09652","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"doi:10.48550/arxiv.2208.09652","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2208.09652","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2208.09652","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2208.09652","pdf_url":"https://arxiv.org/pdf/2208.09652","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/1","score":0.6499999761581421,"display_name":"No poverty"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":68,"referenced_works":["https://openalex.org/W1514077080","https://openalex.org/W1901129140","https://openalex.org/W1959608418","https://openalex.org/W1975353473","https://openalex.org/W1979762151","https://openalex.org/W1987134040","https://openalex.org/W1992579032","https://openalex.org/W2008545402","https://openalex.org/W2013425283","https://openalex.org/W2025768430","https://openalex.org/W2045777307","https://openalex.org/W2046376809","https://openalex.org/W2067236515","https://openalex.org/W2078645984","https://openalex.org/W2094795801","https://openalex.org/W2102245393","https://openalex.org/W2102461176","https://openalex.org/W2107867854","https://openalex.org/W2137825550","https://openalex.org/W2144756522","https://openalex.org/W2161914416","https://openalex.org/W2166637863","https://openalex.org/W2169478909","https://openalex.org/W2171755502","https://openalex.org/W2173591891","https://openalex.org/W2242818861","https://openalex.org/W2547875792","https://openalex.org/W2799251726","https://openalex.org/W2890223884","https://openalex.org/W2896457183","https://openalex.org/W2898889412","https://openalex.org/W2900092738","https://openalex.org/W2906744519","https://openalex.org/W2949117180","https://openalex.org/W2952317511","https://openalex.org/W2962741254","https://openalex.org/W2963223306","https://openalex.org/W2963775850","https://openalex.org/W2963799213","https://openalex.org/W2964208960","https://openalex.org/W2979549406","https://openalex.org/W2997234557","https://openalex.org/W2999044305","https://openalex.org/W3035574324","https://openalex.org/W3036167779","https://openalex.org/W3041956526","https://openalex.org/W3091918580","https://openalex.org/W3111174583","https://openalex.org/W3162262357","https://openalex.org/W3177828909","https://openalex.org/W3183475563","https://openalex.org/W3201100749","https://openalex.org/W3209435229","https://openalex.org/W4214847177","https://openalex.org/W4221084356","https://openalex.org/W4281790889","https://openalex.org/W4283219703","https://openalex.org/W4283641488","https://openalex.org/W4283778436","https://openalex.org/W4286488966","https://openalex.org/W4287549925","https://openalex.org/W4288089799","https://openalex.org/W4289763970","https://openalex.org/W4296060337","https://openalex.org/W4300861364","https://openalex.org/W4312933868","https://openalex.org/W4388979610","https://openalex.org/W4394642966"],"related_works":["https://openalex.org/W2380075625","https://openalex.org/W4390718435","https://openalex.org/W4390549206","https://openalex.org/W2494523064","https://openalex.org/W3137171911","https://openalex.org/W2943623134","https://openalex.org/W2588219639","https://openalex.org/W4237784285","https://openalex.org/W2215759665","https://openalex.org/W4385572368"],"abstract_inverted_index":{"Data-driven":[0],"predictive":[1],"methods":[2],"which":[3,160],"can":[4],"efficiently":[5],"and":[6,21,116,168],"accurately":[7,112],"transform":[8],"protein":[9,38,166,182],"sequences":[10],"into":[11],"biologically":[12],"active":[13],"structures":[14],"are":[15],"highly":[16],"valuable":[17],"for":[18,93,138,146,173],"scientific":[19],"research":[20],"medical":[22],"development.":[23],"Determining":[24],"accurate":[25,128],"folding":[26],"landscape":[27],"using":[28],"co-evolutionary":[29,57],"information":[30],"is":[31],"fundamental":[32],"to":[33,87,126],"the":[34,43,46,52,72,75,89,99,169],"success":[35],"of":[36,45,77,91,165],"modern":[37],"structure":[39,157],"prediction":[40],"methods.":[41],"As":[42],"state":[44],"art,":[47],"AlphaFold2":[48,92,110,136,153],"has":[49],"dramatically":[50],"raised":[51],"accuracy":[53],"without":[54],"performing":[55],"explicit":[56],"analysis.":[58],"Nevertheless,":[59],"its":[60,144],"performance":[61,120],"still":[62],"shows":[63],"strong":[64],"dependence":[65],"on":[66,71,74],"available":[67],"sequence":[68,174],"homologs.":[69],"Based":[70],"interrogation":[73],"cause":[76],"such":[78],"dependence,":[79],"we":[80],"presented":[81],"EvoGen,":[82],"a":[83,155],"meta":[84],"generative":[85],"model,":[86],"remedy":[88],"underperformance":[90],"poor":[94],"MSA":[95,132],"targets.":[96],"By":[97],"prompting":[98],"model":[100],"with":[101,121,130,152],"calibrated":[102],"or":[103],"virtually":[104],"generated":[105],"homologue":[106],"sequences,":[107,140,167],"EvoGen":[108,150],"helps":[109],"fold":[111],"in":[113],"low-data":[114],"regime":[115],"even":[117],"achieve":[118],"encouraging":[119],"single-sequence":[122],"predictions.":[123],"Being":[124],"able":[125],"make":[127],"predictions":[129],"few-shot":[131],"not":[133],"only":[134],"generalizes":[135],"better":[137],"orphan":[139],"but":[141],"also":[142],"democratizes":[143],"use":[145],"high-throughput":[147],"applications.":[148],"Besides,":[149],"combined":[151],"yields":[154],"probabilistic":[156],"generation":[158,175],"method":[159],"could":[161],"explore":[162],"alternative":[163],"conformations":[164],"task-aware":[170],"differentiable":[171],"algorithm":[172],"will":[176],"benefit":[177],"other":[178],"related":[179],"tasks":[180],"including":[181],"design.":[183]},"counts_by_year":[{"year":2023,"cited_by_count":1}],"updated_date":"2026-07-03T08:13:44.112507","created_date":"2025-10-10T00:00:00"}
