{"id":"https://openalex.org/W4290802740","doi":"https://doi.org/10.48550/arxiv.2208.04910","title":"Deep Learning-Based Objective and Reproducible Osteosarcoma Chemotherapy Response Assessment and Outcome Prediction","display_name":"Deep Learning-Based Objective and Reproducible Osteosarcoma Chemotherapy Response Assessment and Outcome Prediction","publication_year":2022,"publication_date":"2022-08-09","ids":{"openalex":"https://openalex.org/W4290802740","doi":"https://doi.org/10.48550/arxiv.2208.04910"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2208.04910","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2208.04910","pdf_url":"https://arxiv.org/pdf/2208.04910","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2208.04910","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046514229","display_name":"David Joon Ho","orcid":"https://orcid.org/0000-0002-9124-884X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ho, David Joon","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051500877","display_name":"Narasimhan P. Agaram","orcid":"https://orcid.org/0000-0002-6991-2310"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Agaram, Narasimhan P.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043328442","display_name":"Marc\u2010Henri Jean","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jean, Marc-Henri","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039704219","display_name":"Stephanie D. Suser","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Suser, Stephanie D.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000666256","display_name":"Cynthia Chu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chu, Cynthia","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089185942","display_name":"Chad Vanderbilt","orcid":"https://orcid.org/0000-0002-8114-0237"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vanderbilt, Chad M.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010913859","display_name":"Paul A. Meyers","orcid":"https://orcid.org/0000-0001-6146-6101"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Meyers, Paul A.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080725919","display_name":"Leonard H. Wexler","orcid":"https://orcid.org/0000-0003-0724-8263"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wexler, Leonard H.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022207361","display_name":"John H. Healey","orcid":"https://orcid.org/0000-0002-0802-1186"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Healey, John H.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014100513","display_name":"Thomas J. Fuchs","orcid":"https://orcid.org/0000-0001-7603-8687"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Fuchs, Thomas J.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5087792111","display_name":"Meera Hameed","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hameed, Meera R.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10253","display_name":"Sarcoma Diagnosis and Treatment","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10253","display_name":"Sarcoma Diagnosis and Treatment","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12874","display_name":"Digital Imaging for Blood Diseases","score":0.9803000092506409,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/necrosis","display_name":"Necrosis","score":0.7385703325271606},{"id":"https://openalex.org/keywords/osteosarcoma","display_name":"Osteosarcoma","score":0.7068442106246948},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.6182779669761658},{"id":"https://openalex.org/keywords/chemotherapy","display_name":"Chemotherapy","score":0.5302559733390808},{"id":"https://openalex.org/keywords/h-e-stain","display_name":"H&E stain","score":0.4358367919921875},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.4270060658454895},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.3873191177845001},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.3440372347831726},{"id":"https://openalex.org/keywords/radiology","display_name":"Radiology","score":0.3340064287185669},{"id":"https://openalex.org/keywords/staining","display_name":"Staining","score":0.1488569676876068}],"concepts":[{"id":"https://openalex.org/C503630168","wikidata":"https://www.wikidata.org/wiki/Q178069","display_name":"Necrosis","level":2,"score":0.7385703325271606},{"id":"https://openalex.org/C2777760704","wikidata":"https://www.wikidata.org/wiki/Q549534","display_name":"Osteosarcoma","level":2,"score":0.7068442106246948},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.6182779669761658},{"id":"https://openalex.org/C2776694085","wikidata":"https://www.wikidata.org/wiki/Q974135","display_name":"Chemotherapy","level":2,"score":0.5302559733390808},{"id":"https://openalex.org/C125473707","wikidata":"https://www.wikidata.org/wiki/Q9914","display_name":"H&E stain","level":3,"score":0.4358367919921875},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.4270060658454895},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.3873191177845001},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.3440372347831726},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.3340064287185669},{"id":"https://openalex.org/C74864618","wikidata":"https://www.wikidata.org/wiki/Q2332446","display_name":"Staining","level":2,"score":0.1488569676876068}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2208.04910","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2208.04910","pdf_url":"https://arxiv.org/pdf/2208.04910","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"doi:10.48550/arxiv.2208.04910","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2208.04910","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2208.04910","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2208.04910","pdf_url":"https://arxiv.org/pdf/2208.04910","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.6000000238418579,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G2051006376","display_name":null,"funder_award_id":"CA008748","funder_id":"https://openalex.org/F4320309468","funder_display_name":"Memorial Sloan-Kettering Cancer Center"},{"id":"https://openalex.org/G4102770861","display_name":null,"funder_award_id":"CA008748","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G4997927349","display_name":"Cancer Center Support Grant","funder_award_id":"4p30ca008748-58","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8834992289","display_name":null,"funder_award_id":"P30 CA0087 48","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G897181964","display_name":null,"funder_award_id":"#P30-CA008748","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320309468","display_name":"Memorial Sloan-Kettering Cancer Center","ror":"https://ror.org/02yrq0923"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4205296404","https://openalex.org/W2320346276","https://openalex.org/W3178656640","https://openalex.org/W2356699866","https://openalex.org/W4241436983","https://openalex.org/W4306641919","https://openalex.org/W2768492030","https://openalex.org/W4323315835","https://openalex.org/W2620289816","https://openalex.org/W2388705147"],"abstract_inverted_index":{"Osteosarcoma":[0],"is":[1,19,30,43,75],"the":[2,46],"most":[3],"common":[4],"primary":[5],"bone":[6],"cancer":[7],"whose":[8],"standard":[9],"treatment":[10,264],"includes":[11],"pre-operative":[12],"chemotherapy":[13],"followed":[14],"by":[15,164,178],"resection.":[16],"Chemotherapy":[17],"response":[18,196,265],"used":[20],"for":[21,184,230,239,243,262],"predicting":[22,267],"prognosis":[23],"and":[24,77,81,88,103,127,145,150,190,193,200,213,233,241,266],"further":[25],"management":[26],"of":[27,48,68],"patients.":[28],"Necrosis":[29],"routinely":[31],"assessed":[32,177],"post-chemotherapy":[33],"from":[34,71,100,156,173,260],"histology":[35,261],"slides":[36,74],"on":[37],"resection":[38],"specimens":[39],"where":[40,180],"necrosis":[41,56,69,95,124,154,161,171,195],"ratio":[42,47,57,70,96,125,155,162,172],"defined":[44],"as":[45,253],"necrotic":[49,146],"tumor":[50,144,147],"to":[51,61,93,116,122,128,137,151,207,225,237,257],"overall":[52,209],"tumor.":[53],"Patients":[54],"with":[55,97,113,170,211,216],">=90%":[58],"are":[59,197],"known":[60],"have":[62,79],"better":[63],"outcome.":[64,269],"Manual":[65],"microscopic":[66],"review":[67],"multiple":[72,139,157],"glass":[73],"semi-quantitative":[76],"can":[78,250],"intra-":[80],"inter-observer":[82],"variability.":[83],"We":[84,108,132,159,203],"propose":[85],"an":[86,254],"objective":[87,255],"reproducible":[89,219],"deep":[90,119,248],"learning-based":[91],"approach":[92,220],"estimate":[94],"outcome":[98,130],"prediction":[99],"scanned":[101],"hematoxylin":[102],"eosin":[104],"whole":[105],"slide":[106],"images.":[107],"collected":[109],"103":[110],"osteosarcoma":[111,259],"cases":[112],"3134":[114],"WSIs":[115],"train":[117],"our":[118,165,231,234],"learning":[120,249],"model,":[121],"validate":[123],"assessment,":[126],"evaluate":[129],"prediction.":[131],"trained":[133],"Deep":[134],"Multi-Magnification":[135],"Network":[136],"segment":[138],"tissue":[140],"subtypes":[141],"including":[142],"viable":[143],"in":[148],"pixel-level":[149],"calculate":[152],"case-level":[153],"WSIs.":[158],"showed":[160],"estimated":[163],"segmentation":[166],"model":[167,232],"highly":[168],"correlates":[169],"pathology":[174],"reports":[175],"manually":[176],"experts":[179],"mean":[181],"absolute":[182],"differences":[183],"Grades":[185],"IV":[186],"(100%),":[187],"III":[188],"(>=90%),":[189],"II":[191],"(>=50%":[192],"<90%)":[194],"4.4%,":[198],"4.5%,":[199],"17.8%,":[201],"respectively.":[202],"successfully":[204],"stratified":[205],"patients":[206],"predict":[208],"survival":[210,215],"p=10^-6":[212],"progression-free":[214],"p=0.012.":[217],"Our":[218,245],"without":[221],"variability":[222],"enabled":[223],"us":[224],"tune":[226],"cutoff":[227],"thresholds,":[228],"specifically":[229],"data":[235],"set,":[236],"80%":[238],"OS":[240],"60%":[242],"PFS.":[244],"study":[246],"indicates":[247],"support":[251],"pathologists":[252],"tool":[256],"analyze":[258],"assessing":[263],"patient":[268]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
