{"id":"https://openalex.org/W4298225895","doi":"https://doi.org/10.48550/arxiv.2208.01692","title":"A cloud platform for automating and sharing analysis of raw simulation data from high throughput polymer molecular dynamics simulations","display_name":"A cloud platform for automating and sharing analysis of raw simulation data from high throughput polymer molecular dynamics simulations","publication_year":2022,"publication_date":"2022-08-02","ids":{"openalex":"https://openalex.org/W4298225895","doi":"https://doi.org/10.48550/arxiv.2208.01692"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2208.01692","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2208.01692","pdf_url":"https://arxiv.org/pdf/2208.01692","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2208.01692","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101773689","display_name":"Tian Xie","orcid":"https://orcid.org/0000-0003-2916-6250"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Xie, Tian","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042043446","display_name":"Ha-Kyung Kwon","orcid":"https://orcid.org/0000-0002-9351-4806"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kwon, Ha-Kyung","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089880511","display_name":"Daniel Schweigert","orcid":"https://orcid.org/0000-0002-5170-8602"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Schweigert, Daniel","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100570052","display_name":"Sheng Gong","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gong, Sheng","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040524194","display_name":"Arthur France\u2010Lanord","orcid":"https://orcid.org/0000-0003-0586-1945"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"France-Lanord, Arthur","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076876475","display_name":"Arash Khajeh","orcid":"https://orcid.org/0000-0002-9061-9370"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Khajeh, Arash","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032142917","display_name":"Emily Crabb","orcid":"https://orcid.org/0000-0003-4717-6698"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Crabb, Emily","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066426025","display_name":"Michael Puzon","orcid":"https://orcid.org/0009-0003-5886-5269"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Puzon, Michael","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079206646","display_name":"Chris Fajardo","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Fajardo, Chris","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007167685","display_name":"Will Powelson","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Powelson, Will","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100601237","display_name":"Yang Shao\u2010Horn","orcid":"https://orcid.org/0000-0001-8714-2121"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Shao-Horn, Yang","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5083309623","display_name":"Jeffrey C. Grossman","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Grossman, Jeffrey C.","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5101773689"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T12292","display_name":"Graph Theory and Algorithms","score":0.958299994468689,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/terabyte","display_name":"Terabyte","score":0.8517221212387085},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7849688529968262},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.7198756337165833},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.6766401529312134},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5151427984237671},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4961441457271576},{"id":"https://openalex.org/keywords/data-sharing","display_name":"Data sharing","score":0.46332401037216187},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4263894855976105},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2640804350376129},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.10249841213226318}],"concepts":[{"id":"https://openalex.org/C199683683","wikidata":"https://www.wikidata.org/wiki/Q8799","display_name":"Terabyte","level":2,"score":0.8517221212387085},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7849688529968262},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.7198756337165833},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.6766401529312134},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5151427984237671},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4961441457271576},{"id":"https://openalex.org/C2779965156","wikidata":"https://www.wikidata.org/wiki/Q5227350","display_name":"Data sharing","level":3,"score":0.46332401037216187},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4263894855976105},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2640804350376129},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.10249841213226318},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2208.01692","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2208.01692","pdf_url":"https://arxiv.org/pdf/2208.01692","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"doi:10.48550/arxiv.2208.01692","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2208.01692","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2208.01692","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2208.01692","pdf_url":"https://arxiv.org/pdf/2208.01692","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.550000011920929}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2066858118","https://openalex.org/W2134017072","https://openalex.org/W1976914335","https://openalex.org/W2915208987","https://openalex.org/W2152256925","https://openalex.org/W1940452713","https://openalex.org/W2058150833","https://openalex.org/W1968399615","https://openalex.org/W1992241391","https://openalex.org/W2047864778"],"abstract_inverted_index":{"Open":[0],"material":[1,8],"databases":[2],"storing":[3],"hundreds":[4],"of":[5,7,18,27,67,105,191,203],"thousands":[6],"structures":[9],"and":[10,38,70,102,128,142,163,189,207],"their":[11,52],"corresponding":[12],"properties":[13,81,118,171],"have":[14],"become":[15],"the":[16,24,28,32,65,72,76,84,120,140,176,196,211],"cornerstone":[17],"modern":[19],"computational":[20,212],"materials":[21,213],"science.":[22],"Yet,":[23],"raw":[25,68,121,205],"outputs":[26],"simulations,":[29],"such":[30],"as":[31],"trajectories":[33,97],"from":[34,41,119],"molecular":[35,95],"dynamics":[36,96],"simulations":[37],"charge":[39],"densities":[40],"density":[42],"functional":[43],"theory":[44],"calculations,":[45],"are":[46],"generally":[47],"not":[48],"shared":[49],"due":[50],"to":[51,63,78,115,157,198],"huge":[53],"size.":[54],"In":[55],"this":[56],"work,":[57],"we":[58,179],"describe":[59],"a":[60,109,146,181,200],"cloud-based":[61],"platform":[62,154,197],"facilitate":[64],"sharing":[66,204],"data":[69,162,206],"enable":[71],"fast":[73],"post-processing":[74],"in":[75,139],"cloud":[77],"extract":[79,116],"new":[80,160,201,208],"defined":[82],"by":[83],"user.":[85],"As":[86],"an":[87],"initial":[88],"demonstration,":[89],"our":[90,192],"database":[91,147],"currently":[92],"includes":[93],"6286":[94],"for":[98,187,210],"amorphous":[99],"polymer":[100],"electrolytes":[101],"5.7":[103],"terabytes":[104],"data.":[106,193],"We":[107,194],"create":[108,180],"public":[110,167],"analysis":[111,133,164],"library":[112],"at":[113,185],"https://github.com/TRI-AMDD/htp_md":[114],"multiple":[117],"data,":[122],"using":[123],"both":[124,159],"expert":[125],"designed":[126],"functions":[127,165],"machine":[129],"learning":[130],"models.":[131],"The":[132],"is":[134],"run":[135],"automatically":[136],"with":[137],"computation":[138],"cloud,":[141],"results":[143],"then":[144],"populate":[145],"that":[148],"can":[149],"be":[150,173,199],"accessed":[151],"publicly.":[152],"Our":[153],"encourages":[155],"users":[156],"contribute":[158],"trajectory":[161],"via":[166],"interfaces.":[168],"Newly":[169],"analyzed":[170],"will":[172],"incorporated":[174],"into":[175],"database.":[177],"Finally,":[178],"front-end":[182],"user":[183],"interface":[184],"https://www.htpmd.matr.io":[186],"browsing":[188],"visualization":[190],"envision":[195],"way":[202],"insights":[209],"science":[214],"community.":[215]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2026-02-09T09:26:11.010843","created_date":"2022-10-01T00:00:00"}
