{"id":"https://openalex.org/W4283641488","doi":"https://doi.org/10.48550/arxiv.2206.12240","title":"PSP: Million-level Protein Sequence Dataset for Protein Structure Prediction","display_name":"PSP: Million-level Protein Sequence Dataset for Protein Structure Prediction","publication_year":2022,"publication_date":"2022-06-24","ids":{"openalex":"https://openalex.org/W4283641488","doi":"https://doi.org/10.48550/arxiv.2206.12240"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2206.12240","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2206.12240","pdf_url":"https://arxiv.org/pdf/2206.12240","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2206.12240","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101570464","display_name":"Sirui Liu","orcid":"https://orcid.org/0000-0002-9369-6291"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Liu, Sirui","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100433177","display_name":"Jun Zhang","orcid":"https://orcid.org/0000-0002-5842-7424"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhang, Jun","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091291587","display_name":"Haotian Chu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chu, Haotian","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115694841","display_name":"Min Wang","orcid":"https://orcid.org/0000-0003-2052-199X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wang, Min","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071969691","display_name":"Boxin Xue","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xue, Boxin","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072395322","display_name":"Ningxi Ni","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ni, Ningxi","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022258522","display_name":"Jialiang Yu","orcid":"https://orcid.org/0000-0002-3439-6635"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yu, Jialiang","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050348327","display_name":"Yuhao Xie","orcid":"https://orcid.org/0000-0003-0319-8270"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xie, Yuhao","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100422927","display_name":"Zhen\u2010Yu Chen","orcid":"https://orcid.org/0000-0001-5615-1682"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chen, Zhenyu","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052393347","display_name":"Mengyun Chen","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chen, Mengyun","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010274839","display_name":"Yuan Liu","orcid":"https://orcid.org/0000-0002-1156-7673"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Liu, Yuan","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067525523","display_name":"Piya Patra","orcid":"https://orcid.org/0000-0001-8964-2648"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Patra, Piya","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100601751","display_name":"Fan Xu","orcid":"https://orcid.org/0000-0002-2595-6207"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xu, Fan","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100332846","display_name":"Jie Chen","orcid":"https://orcid.org/0000-0001-7925-3729"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chen, Jie","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100699858","display_name":"Zidong Wang","orcid":"https://orcid.org/0000-0002-9576-7401"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wang, Zidong","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011421057","display_name":"Lijiang Yang","orcid":"https://orcid.org/0000-0002-8175-0609"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yang, Lijiang","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100346625","display_name":"Yu Fan","orcid":"https://orcid.org/0000-0002-9917-593X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yu, Fan","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100755955","display_name":"Lei Chen","orcid":"https://orcid.org/0000-0003-3068-1583"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chen, Lei","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5051732177","display_name":"Yi Qin Gao","orcid":"https://orcid.org/0000-0002-4309-9376"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gao, Yi Qin","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":19,"corresponding_author_ids":["https://openalex.org/A5101570464"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.8382269144058228},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6665198802947998},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.6586512327194214},{"id":"https://openalex.org/keywords/protein-function-prediction","display_name":"Protein function prediction","score":0.6014876961708069},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5398212671279907},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.531208872795105},{"id":"https://openalex.org/keywords/contest","display_name":"CONTEST","score":0.5141454339027405},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.488796204328537},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4121042490005493},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4065020680427551},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.39792174100875854},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.3649236559867859},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12838804721832275},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.06749263405799866}],"concepts":[{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.8382269144058228},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6665198802947998},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.6586512327194214},{"id":"https://openalex.org/C207060522","wikidata":"https://www.wikidata.org/wiki/Q7251473","display_name":"Protein function prediction","level":4,"score":0.6014876961708069},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5398212671279907},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.531208872795105},{"id":"https://openalex.org/C2777582232","wikidata":"https://www.wikidata.org/wiki/Q5013414","display_name":"CONTEST","level":2,"score":0.5141454339027405},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.488796204328537},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4121042490005493},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4065020680427551},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.39792174100875854},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.3649236559867859},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12838804721832275},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.06749263405799866},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2206.12240","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2206.12240","pdf_url":"https://arxiv.org/pdf/2206.12240","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"doi:10.48550/arxiv.2206.12240","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2206.12240","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2206.12240","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2206.12240","pdf_url":"https://arxiv.org/pdf/2206.12240","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.47999998927116394,"id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2593264178","https://openalex.org/W2470147982","https://openalex.org/W4311623193","https://openalex.org/W2043066834","https://openalex.org/W2185518315","https://openalex.org/W4387310732","https://openalex.org/W2181530468","https://openalex.org/W1504467230","https://openalex.org/W2129046747","https://openalex.org/W2171208795"],"abstract_inverted_index":{"Proteins":[0],"are":[1,10,58],"essential":[2],"component":[3],"of":[4,23,33,41,50,65,95,128,160],"human":[5],"life":[6],"and":[7,14,43,87,101],"their":[8],"structures":[9],"important":[11],"for":[12,26,115,131,163],"function":[13],"mechanism":[15],"analysis.":[16],"Recent":[17],"work":[18],"has":[19],"shown":[20],"the":[21,31,39,48,53,63,77,111,126,142,152],"potential":[22],"AI-driven":[24,164],"methods":[25],"protein":[27,67,80,117,165],"structure":[28,81,98,118],"prediction.":[29],"However,":[30],"development":[32],"new":[34],"models":[35],"is":[36],"restricted":[37],"by":[38,133],"lack":[40],"dataset":[42,83,93,130,149],"benchmark":[44,112,154],"training":[45,113,132,153],"procedure.":[46],"To":[47,71],"best":[49],"our":[51,139,147],"knowledge,":[52],"existing":[54],"open":[55],"source":[56],"datasets":[57],"far":[59],"less":[60],"to":[61],"satisfy":[62],"needs":[64],"modern":[66],"sequence-structure":[68],"related":[69,166],"research.":[70,167],"solve":[72],"this":[73,122,129],"problem,":[74],"we":[75],"present":[76],"first":[78,143],"million-level":[79],"prediction":[82,119],"with":[84,151],"high":[85],"coverage":[86],"diversity,":[88],"named":[89],"as":[90],"PSP.":[91],"This":[92],"consists":[94],"570k":[96],"true":[97],"sequences":[99,105],"(10TB)":[100],"745k":[102],"complementary":[103],"distillation":[104],"(15TB).":[106],"We":[107,124,145],"provide":[108],"in":[109,137],"addition":[110],"procedure":[114],"SOTA":[116],"model":[120,140],"on":[121],"dataset.":[123],"validate":[125],"utility":[127],"participating":[134],"CAMEO":[135],"contest":[136],"which":[138],"won":[141],"place.":[144],"hope":[146],"PSP":[148],"together":[150],"can":[155],"enable":[156],"a":[157],"broader":[158],"community":[159],"AI/biology":[161],"researchers":[162]},"counts_by_year":[{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3}],"updated_date":"2026-02-09T09:26:11.010843","created_date":"2022-06-29T00:00:00"}
