{"id":"https://openalex.org/W2405401537","doi":"https://doi.org/10.4108/eai.3-12-2015.2262520","title":"Abundance of connected motifs in transcriptional networks, a case study using random forests regression","display_name":"Abundance of connected motifs in transcriptional networks, a case study using random forests regression","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2405401537","doi":"https://doi.org/10.4108/eai.3-12-2015.2262520","mag":"2405401537"},"language":"en","primary_location":{"id":"doi:10.4108/eai.3-12-2015.2262520","is_oa":true,"landing_page_url":"https://doi.org/10.4108/eai.3-12-2015.2262520","pdf_url":"http://eudl.eu/pdf/10.4108/eai.3-12-2015.2262520","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 9th EAI International Conference on Bio-inspired Information and Communications Technologies (formerly BIONETICS)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"http://eudl.eu/pdf/10.4108/eai.3-12-2015.2262520","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050819040","display_name":"Khajamoinuddin Syed","orcid":"https://orcid.org/0000-0002-5433-2751"},"institutions":[{"id":"https://openalex.org/I184840846","display_name":"Virginia Commonwealth University","ror":"https://ror.org/02nkdxk79","country_code":"US","type":"education","lineage":["https://openalex.org/I184840846"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Syed Khajamoinuddin","raw_affiliation_strings":["Virginia Commonwealth University, 401 W Main St, Rich-mond, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Virginia Commonwealth University, 401 W Main St, Rich-mond, VA, USA","institution_ids":["https://openalex.org/I184840846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078981749","display_name":"Bhanu Kamapantula","orcid":null},"institutions":[{"id":"https://openalex.org/I184840846","display_name":"Virginia Commonwealth University","ror":"https://ror.org/02nkdxk79","country_code":"US","type":"education","lineage":["https://openalex.org/I184840846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bhanu Kamapantula","raw_affiliation_strings":["Virginia Commonwealth University, 401 W Main St, Rich-mond, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Virginia Commonwealth University, 401 W Main St, Rich-mond, VA, USA","institution_ids":["https://openalex.org/I184840846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045705423","display_name":"Michael L. Mayo","orcid":"https://orcid.org/0000-0001-9014-1859"},"institutions":[{"id":"https://openalex.org/I87303767","display_name":"U.S. Army Engineer Research and Development Center","ror":"https://ror.org/027mhn368","country_code":"US","type":"facility","lineage":["https://openalex.org/I1304082316","https://openalex.org/I1306490931","https://openalex.org/I1330347796","https://openalex.org/I87303767"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Mayo","raw_affiliation_strings":["Environmental Laboratory, US Army Engineer Research and Development Center, Vicksburg, MS 39180"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Environmental Laboratory, US Army Engineer Research and Development Center, Vicksburg, MS 39180","institution_ids":["https://openalex.org/I87303767"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075371599","display_name":"Edward J. Perkins","orcid":"https://orcid.org/0000-0003-1693-7714"},"institutions":[{"id":"https://openalex.org/I87303767","display_name":"U.S. Army Engineer Research and Development Center","ror":"https://ror.org/027mhn368","country_code":"US","type":"facility","lineage":["https://openalex.org/I1304082316","https://openalex.org/I1306490931","https://openalex.org/I1330347796","https://openalex.org/I87303767"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Edward Perkins","raw_affiliation_strings":["Environmental Laboratory, US Army Engineer Research and Development Center, Vicksburg, MS 39180"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Environmental Laboratory, US Army Engineer Research and Development Center, Vicksburg, MS 39180","institution_ids":["https://openalex.org/I87303767"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080886331","display_name":"Preetam Ghosh","orcid":"https://orcid.org/0000-0003-3880-5886"},"institutions":[{"id":"https://openalex.org/I184840846","display_name":"Virginia Commonwealth University","ror":"https://ror.org/02nkdxk79","country_code":"US","type":"education","lineage":["https://openalex.org/I184840846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Preetam Ghosh","raw_affiliation_strings":["Virginia Commonwealth University, 401 W Main St, Rich-mond, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Virginia Commonwealth University, 401 W Main St, Rich-mond, VA, USA","institution_ids":["https://openalex.org/I184840846"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5050819040"],"corresponding_institution_ids":["https://openalex.org/I184840846"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.02849597,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/network-topology","display_name":"Network topology","score":0.764015793800354},{"id":"https://openalex.org/keywords/shortest-path-problem","display_name":"Shortest path problem","score":0.6081834435462952},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.5535444021224976},{"id":"https://openalex.org/keywords/abundance","display_name":"Abundance (ecology)","score":0.5387613773345947},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5207909941673279},{"id":"https://openalex.org/keywords/path","display_name":"Path (computing)","score":0.4724079966545105},{"id":"https://openalex.org/keywords/path-length","display_name":"Path length","score":0.4145921468734741},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.40344107151031494},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3571814000606537},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.31952744722366333},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2497062385082245},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.24305400252342224},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.228532075881958},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.19184908270835876},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.1686621606349945},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.1026427149772644}],"concepts":[{"id":"https://openalex.org/C199845137","wikidata":"https://www.wikidata.org/wiki/Q145490","display_name":"Network topology","level":2,"score":0.764015793800354},{"id":"https://openalex.org/C22590252","wikidata":"https://www.wikidata.org/wiki/Q1058754","display_name":"Shortest path problem","level":3,"score":0.6081834435462952},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.5535444021224976},{"id":"https://openalex.org/C77077793","wikidata":"https://www.wikidata.org/wiki/Q336019","display_name":"Abundance (ecology)","level":2,"score":0.5387613773345947},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5207909941673279},{"id":"https://openalex.org/C2777735758","wikidata":"https://www.wikidata.org/wiki/Q817765","display_name":"Path (computing)","level":2,"score":0.4724079966545105},{"id":"https://openalex.org/C129045301","wikidata":"https://www.wikidata.org/wiki/Q7144654","display_name":"Path length","level":2,"score":0.4145921468734741},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.40344107151031494},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3571814000606537},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.31952744722366333},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2497062385082245},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.24305400252342224},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.228532075881958},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.19184908270835876},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.1686621606349945},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.1026427149772644},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.4108/eai.3-12-2015.2262520","is_oa":true,"landing_page_url":"https://doi.org/10.4108/eai.3-12-2015.2262520","pdf_url":"http://eudl.eu/pdf/10.4108/eai.3-12-2015.2262520","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 9th EAI International Conference on Bio-inspired Information and Communications Technologies (formerly BIONETICS)","raw_type":"proceedings-article"},{"id":"pmh:oai:doaj.org/article:916e5bd51fd34454b900bac77653bce7","is_oa":false,"landing_page_url":"https://doaj.org/article/916e5bd51fd34454b900bac77653bce7","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"EAI Endorsed Transactions on Mobile Communications and Applications, Vol 2, Iss 10, Pp 1-8 (2016)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.4108/eai.3-12-2015.2262520","is_oa":true,"landing_page_url":"https://doi.org/10.4108/eai.3-12-2015.2262520","pdf_url":"http://eudl.eu/pdf/10.4108/eai.3-12-2015.2262520","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 9th EAI International Conference on Bio-inspired Information and Communications Technologies (formerly BIONETICS)","raw_type":"proceedings-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.699999988079071}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2405401537.pdf","grobid_xml":"https://content.openalex.org/works/W2405401537.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W143162329","https://openalex.org/W1565474750","https://openalex.org/W1965911703","https://openalex.org/W2020340756","https://openalex.org/W2023649587","https://openalex.org/W2029311990","https://openalex.org/W2085276378","https://openalex.org/W2101234009","https://openalex.org/W2109110326","https://openalex.org/W2109943925","https://openalex.org/W2132022337","https://openalex.org/W2153624566","https://openalex.org/W2163571800","https://openalex.org/W2207770309","https://openalex.org/W2398258917","https://openalex.org/W2406772186","https://openalex.org/W2911964244","https://openalex.org/W4298884898","https://openalex.org/W6641710808","https://openalex.org/W6675354045","https://openalex.org/W6911006723"],"related_works":["https://openalex.org/W1982032334","https://openalex.org/W2898676476","https://openalex.org/W1602184149","https://openalex.org/W2102269193","https://openalex.org/W4225279627","https://openalex.org/W2776102956","https://openalex.org/W1128195214","https://openalex.org/W569048669","https://openalex.org/W2363632570","https://openalex.org/W2056148391"],"abstract_inverted_index":{"Biological":[0],"network":[1,31,35],"topologies":[2],"are":[3],"known":[4],"to":[5,23,25],"be":[6],"robust":[7],"despite":[8],"internal":[9],"and":[10,18,27,40],"external":[11],"perturbances.":[12],"Motifs":[13],"such":[14,33],"as":[15,34],"feed-forward":[16],"loop":[17],"bifan":[19],"have":[20],"been":[21],"marked":[22],"contribute":[24],"structural":[26],"functional":[28],"significance.":[29],"While":[30],"characteristics":[32],"density,":[36],"average":[37],"shortest":[38],"path,":[39],"cent":[41]},"counts_by_year":[],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}