{"id":"https://openalex.org/W2398785473","doi":"https://doi.org/10.4108/eai.3-12-2015.2262473","title":"Optimal topology of gene-regulatory networks: role of the average shortest path","display_name":"Optimal topology of gene-regulatory networks: role of the average shortest path","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2398785473","doi":"https://doi.org/10.4108/eai.3-12-2015.2262473","mag":"2398785473"},"language":"en","primary_location":{"id":"doi:10.4108/eai.3-12-2015.2262473","is_oa":true,"landing_page_url":"https://doi.org/10.4108/eai.3-12-2015.2262473","pdf_url":"http://eudl.eu/pdf/10.4108/eai.3-12-2015.2262473","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 9th EAI International Conference on Bio-inspired Information and Communications Technologies (formerly BIONETICS)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"http://eudl.eu/pdf/10.4108/eai.3-12-2015.2262473","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019459330","display_name":"Ahmed Abdelzaher","orcid":null},"institutions":[{"id":"https://openalex.org/I184840846","display_name":"Virginia Commonwealth University","ror":"https://ror.org/02nkdxk79","country_code":"US","type":"education","lineage":["https://openalex.org/I184840846"]},{"id":"https://openalex.org/I87303767","display_name":"U.S. Army Engineer Research and Development Center","ror":"https://ror.org/027mhn368","country_code":"US","type":"facility","lineage":["https://openalex.org/I1304082316","https://openalex.org/I1306490931","https://openalex.org/I1330347796","https://openalex.org/I87303767"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ahmed Abdelzaher","raw_affiliation_strings":["Virginia Commonwealth University Department of Computer Science Richmond, VA 23284","Environmental Laboratory US Army Engineer Research and Development Center Vicksburg, MS 39183","Department of Computer Science Virginia Commonwealth University Richmond, VA 23284"],"affiliations":[{"raw_affiliation_string":"Virginia Commonwealth University Department of Computer Science Richmond, VA 23284","institution_ids":["https://openalex.org/I184840846"]},{"raw_affiliation_string":"Environmental Laboratory US Army Engineer Research and Development Center Vicksburg, MS 39183","institution_ids":["https://openalex.org/I87303767"]},{"raw_affiliation_string":"Department of Computer Science Virginia Commonwealth University Richmond, VA 23284","institution_ids":["https://openalex.org/I184840846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010321059","display_name":"Thang N. Dinh","orcid":"https://orcid.org/0000-0003-4847-8356"},"institutions":[{"id":"https://openalex.org/I184840846","display_name":"Virginia Commonwealth University","ror":"https://ror.org/02nkdxk79","country_code":"US","type":"education","lineage":["https://openalex.org/I184840846"]},{"id":"https://openalex.org/I87303767","display_name":"U.S. Army Engineer Research and Development Center","ror":"https://ror.org/027mhn368","country_code":"US","type":"facility","lineage":["https://openalex.org/I1304082316","https://openalex.org/I1306490931","https://openalex.org/I1330347796","https://openalex.org/I87303767"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thang Dinh","raw_affiliation_strings":["Virginia Commonwealth University Department of Computer Science Richmond, VA 23284","Environmental Laboratory US Army Engineer Research and Development Center Vicksburg, MS 39183","Department of Computer Science Virginia Commonwealth University Richmond, VA 23284"],"affiliations":[{"raw_affiliation_string":"Virginia Commonwealth University Department of Computer Science Richmond, VA 23284","institution_ids":["https://openalex.org/I184840846"]},{"raw_affiliation_string":"Environmental Laboratory US Army Engineer Research and Development Center Vicksburg, MS 39183","institution_ids":["https://openalex.org/I87303767"]},{"raw_affiliation_string":"Department of Computer Science Virginia Commonwealth University Richmond, VA 23284","institution_ids":["https://openalex.org/I184840846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045705423","display_name":"Michael L. Mayo","orcid":"https://orcid.org/0000-0001-9014-1859"},"institutions":[{"id":"https://openalex.org/I87303767","display_name":"U.S. Army Engineer Research and Development Center","ror":"https://ror.org/027mhn368","country_code":"US","type":"facility","lineage":["https://openalex.org/I1304082316","https://openalex.org/I1306490931","https://openalex.org/I1330347796","https://openalex.org/I87303767"]},{"id":"https://openalex.org/I184840846","display_name":"Virginia Commonwealth University","ror":"https://ror.org/02nkdxk79","country_code":"US","type":"education","lineage":["https://openalex.org/I184840846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Mayo","raw_affiliation_strings":["Environmental Laboratory US Army Engineer Research and Development Center Vicksburg, MS 39183","Virginia Commonwealth University Department of Computer Science Richmond, VA 23284","Department of Computer Science Virginia Commonwealth University Richmond, VA 23284"],"affiliations":[{"raw_affiliation_string":"Environmental Laboratory US Army Engineer Research and Development Center Vicksburg, MS 39183","institution_ids":["https://openalex.org/I87303767"]},{"raw_affiliation_string":"Virginia Commonwealth University Department of Computer Science Richmond, VA 23284","institution_ids":["https://openalex.org/I184840846"]},{"raw_affiliation_string":"Department of Computer Science Virginia Commonwealth University Richmond, VA 23284","institution_ids":["https://openalex.org/I184840846"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080886331","display_name":"Preetam Ghosh","orcid":"https://orcid.org/0000-0003-3880-5886"},"institutions":[{"id":"https://openalex.org/I184840846","display_name":"Virginia Commonwealth University","ror":"https://ror.org/02nkdxk79","country_code":"US","type":"education","lineage":["https://openalex.org/I184840846"]},{"id":"https://openalex.org/I87303767","display_name":"U.S. Army Engineer Research and Development Center","ror":"https://ror.org/027mhn368","country_code":"US","type":"facility","lineage":["https://openalex.org/I1304082316","https://openalex.org/I1306490931","https://openalex.org/I1330347796","https://openalex.org/I87303767"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Preetam Ghosh","raw_affiliation_strings":["Department of Computer Science Virginia Commonwealth University Richmond, VA 23284","Environmental Laboratory US Army Engineer Research and Development Center Vicksburg, MS 39183","Virginia Commonwealth University Department of Computer Science Richmond, VA 23284"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science Virginia Commonwealth University Richmond, VA 23284","institution_ids":["https://openalex.org/I184840846"]},{"raw_affiliation_string":"Environmental Laboratory US Army Engineer Research and Development Center Vicksburg, MS 39183","institution_ids":["https://openalex.org/I87303767"]},{"raw_affiliation_string":"Virginia Commonwealth University Department of Computer Science Richmond, VA 23284","institution_ids":["https://openalex.org/I184840846"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5019459330"],"corresponding_institution_ids":["https://openalex.org/I184840846","https://openalex.org/I87303767"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.02662414,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":93},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9897000193595886,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.6948282718658447},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.6653077602386475},{"id":"https://openalex.org/keywords/shortest-path-problem","display_name":"Shortest path problem","score":0.6024181842803955},{"id":"https://openalex.org/keywords/network-topology","display_name":"Network topology","score":0.5952235460281372},{"id":"https://openalex.org/keywords/path","display_name":"Path (computing)","score":0.5461276173591614},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5184063911437988},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4934217035770416},{"id":"https://openalex.org/keywords/property","display_name":"Property (philosophy)","score":0.46789443492889404},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3688775897026062},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.3343888521194458},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.3275231719017029},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3270442485809326},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2806400656700134},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2162657082080841},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.18746629357337952},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.1567808985710144},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.1415298581123352},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.06736975908279419}],"concepts":[{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.6948282718658447},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.6653077602386475},{"id":"https://openalex.org/C22590252","wikidata":"https://www.wikidata.org/wiki/Q1058754","display_name":"Shortest path problem","level":3,"score":0.6024181842803955},{"id":"https://openalex.org/C199845137","wikidata":"https://www.wikidata.org/wiki/Q145490","display_name":"Network topology","level":2,"score":0.5952235460281372},{"id":"https://openalex.org/C2777735758","wikidata":"https://www.wikidata.org/wiki/Q817765","display_name":"Path (computing)","level":2,"score":0.5461276173591614},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5184063911437988},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4934217035770416},{"id":"https://openalex.org/C189950617","wikidata":"https://www.wikidata.org/wiki/Q937228","display_name":"Property (philosophy)","level":2,"score":0.46789443492889404},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3688775897026062},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.3343888521194458},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.3275231719017029},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3270442485809326},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2806400656700134},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2162657082080841},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.18746629357337952},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.1567808985710144},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.1415298581123352},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.06736975908279419},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.4108/eai.3-12-2015.2262473","is_oa":true,"landing_page_url":"https://doi.org/10.4108/eai.3-12-2015.2262473","pdf_url":"http://eudl.eu/pdf/10.4108/eai.3-12-2015.2262473","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 9th EAI International Conference on Bio-inspired Information and Communications Technologies (formerly BIONETICS)","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.4108/eai.3-12-2015.2262473","is_oa":true,"landing_page_url":"https://doi.org/10.4108/eai.3-12-2015.2262473","pdf_url":"http://eudl.eu/pdf/10.4108/eai.3-12-2015.2262473","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 9th EAI International Conference on Bio-inspired Information and Communications Technologies (formerly BIONETICS)","raw_type":"proceedings-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"id":"https://metadata.un.org/sdg/13","display_name":"Climate action"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2398785473.pdf","grobid_xml":"https://content.openalex.org/works/W2398785473.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1495430942","https://openalex.org/W1519771876","https://openalex.org/W1875112053","https://openalex.org/W1987815409","https://openalex.org/W1993771871","https://openalex.org/W1998754077","https://openalex.org/W2000042664","https://openalex.org/W2011401040","https://openalex.org/W2012498017","https://openalex.org/W2023649587","https://openalex.org/W2024060531","https://openalex.org/W2097571405","https://openalex.org/W2110060346","https://openalex.org/W2110699703","https://openalex.org/W2116392242","https://openalex.org/W2124637492","https://openalex.org/W2155353402","https://openalex.org/W2319705120","https://openalex.org/W3103071483","https://openalex.org/W3103362336","https://openalex.org/W4211017114","https://openalex.org/W6656506093","https://openalex.org/W6677782233","https://openalex.org/W6703734804"],"related_works":["https://openalex.org/W2086397253","https://openalex.org/W2133122801","https://openalex.org/W600422426","https://openalex.org/W2007156430","https://openalex.org/W2170882281","https://openalex.org/W3081478936","https://openalex.org/W2785612136","https://openalex.org/W1539291615","https://openalex.org/W1988224651","https://openalex.org/W2096179639"],"abstract_inverted_index":{"Gene":[0],"regulatory":[1],"networks":[2,29],"(GRNs)":[3],"possess":[4],"an":[5],"important":[6],"structural":[7],"property;":[8],"they":[9],"are":[10],"sparse":[11],"and":[12],"resilient,":[13],"with":[14],"a":[15],"robust":[16],"topology":[17],"that":[18],"affords":[19],"protection":[20],"against":[21],"random":[22],"\"attacks\"":[23],"(e.g.,":[24],"gene":[25],"deletions).":[26],"However,":[27],"such":[28],"exhibit":[30],"optimal":[31],"or":[32],"near-optimal":[33],"topological":[34],"features":[35],"not":[36],"present":[37],"in":[38],"other":[39]},"counts_by_year":[{"year":2021,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
