{"id":"https://openalex.org/W2056979402","doi":"https://doi.org/10.4018/jats.2012070101","title":"Falsifying an Enzyme Induction Mechanism within a Validated, Multiscale Liver Model","display_name":"Falsifying an Enzyme Induction Mechanism within a Validated, Multiscale Liver Model","publication_year":2012,"publication_date":"2012-07-01","ids":{"openalex":"https://openalex.org/W2056979402","doi":"https://doi.org/10.4018/jats.2012070101","mag":"2056979402"},"language":"en","primary_location":{"id":"doi:10.4018/jats.2012070101","is_oa":false,"landing_page_url":"https://doi.org/10.4018/jats.2012070101","pdf_url":null,"source":{"id":"https://openalex.org/S162923185","display_name":"International Journal of Agent Technologies and Systems","issn_l":"1943-0744","issn":["1943-0744","1943-0752"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320424","host_organization_name":"IGI Global","host_organization_lineage":["https://openalex.org/P4310320424"],"host_organization_lineage_names":["IGI Global"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Agent Technologies and Systems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015627205","display_name":"Glen E. P. Ropella","orcid":"https://orcid.org/0000-0002-6031-105X"},"institutions":[{"id":"https://openalex.org/I4210114883","display_name":"Tempus Labs (United States)","ror":"https://ror.org/01gbymr57","country_code":"US","type":"company","lineage":["https://openalex.org/I4210114883"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Glen E. P. Ropella","raw_affiliation_strings":["Tempus Dictum, Inc., USA","Tempus Dictum, Inc., USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Tempus Dictum, Inc., USA","institution_ids":["https://openalex.org/I4210114883"]},{"raw_affiliation_string":"Tempus Dictum, Inc., USA#TAB#","institution_ids":["https://openalex.org/I4210114883"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089164832","display_name":"Ryan Kennedy","orcid":"https://orcid.org/0000-0003-2146-4026"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ryan C. Kennedy","raw_affiliation_strings":["University of California, USA"],"affiliations":[{"raw_affiliation_string":"University of California, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001335754","display_name":"C. Anthony Hunt","orcid":"https://orcid.org/0000-0001-9372-6860"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"C. Anthony Hunt","raw_affiliation_strings":["University of California, USA"],"affiliations":[{"raw_affiliation_string":"University of California, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5015627205"],"corresponding_institution_ids":["https://openalex.org/I4210114883"],"apc_list":null,"apc_paid":null,"fwci":0.7039,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.71316731,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"4","issue":"3","first_page":"1","last_page":"14"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10351","display_name":"Liver Disease Diagnosis and Treatment","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9894000291824341,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7892450094223022},{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.6633842587471008},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.6221188306808472},{"id":"https://openalex.org/keywords/liver-enzyme","display_name":"Liver enzyme","score":0.5307970643043518},{"id":"https://openalex.org/keywords/liver-toxicity","display_name":"Liver toxicity","score":0.430963397026062},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.41554978489875793},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3662361800670624},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11523744463920593},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.09364688396453857}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7892450094223022},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.6633842587471008},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.6221188306808472},{"id":"https://openalex.org/C3020359197","wikidata":"https://www.wikidata.org/wiki/Q1359801","display_name":"Liver enzyme","level":2,"score":0.5307970643043518},{"id":"https://openalex.org/C2993709057","wikidata":"https://www.wikidata.org/wiki/Q1349821","display_name":"Liver toxicity","level":3,"score":0.430963397026062},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.41554978489875793},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3662361800670624},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11523744463920593},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.09364688396453857},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C29730261","wikidata":"https://www.wikidata.org/wiki/Q274160","display_name":"Toxicity","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C134018914","wikidata":"https://www.wikidata.org/wiki/Q162606","display_name":"Endocrinology","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.4018/jats.2012070101","is_oa":false,"landing_page_url":"https://doi.org/10.4018/jats.2012070101","pdf_url":null,"source":{"id":"https://openalex.org/S162923185","display_name":"International Journal of Agent Technologies and Systems","issn_l":"1943-0744","issn":["1943-0744","1943-0752"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320424","host_organization_name":"IGI Global","host_organization_lineage":["https://openalex.org/P4310320424"],"host_organization_lineage_names":["IGI Global"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Agent Technologies and Systems","raw_type":"journal-article"},{"id":"pmh:oai:RePEc:igg:jats00:v:4:y:2012:i:3:p:1-14","is_oa":false,"landing_page_url":"http://services.igi-global.com/resolvedoi/resolve.aspx?doi=10.4018/jats.2012070101","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/16","score":0.4399999976158142,"display_name":"Peace, Justice and strong institutions"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W18805993","https://openalex.org/W66282781","https://openalex.org/W1932377803","https://openalex.org/W1967261220","https://openalex.org/W2008566763","https://openalex.org/W2029867647","https://openalex.org/W2056464330","https://openalex.org/W2059284049","https://openalex.org/W2066044063","https://openalex.org/W2091192629","https://openalex.org/W2107212437","https://openalex.org/W2107730987","https://openalex.org/W2118120069","https://openalex.org/W2125424534","https://openalex.org/W2126854092","https://openalex.org/W2127168864","https://openalex.org/W2154514556","https://openalex.org/W2155550213","https://openalex.org/W2159748585","https://openalex.org/W2168960238","https://openalex.org/W2264172581","https://openalex.org/W2395369933","https://openalex.org/W4248745245"],"related_works":["https://openalex.org/W2912862995","https://openalex.org/W2155214587","https://openalex.org/W2586193417","https://openalex.org/W2610955819","https://openalex.org/W4302344287","https://openalex.org/W2520472633","https://openalex.org/W4385843184","https://openalex.org/W2086808262","https://openalex.org/W2493483446","https://openalex.org/W2996697494"],"abstract_inverted_index":{"The":[0,89,122,133],"focus":[1],"is":[2,58,128,139],"an":[3,11],"In":[4],"Silico":[5],"Liver":[6],"(ISL)":[7],"model":[8],"family":[9],"and":[10,24,44,63,111],"evolving":[12,65],"suite":[13],"of":[14,36,106,119],"mechanistic":[15],"hypotheses":[16,66],"about":[17,67],"(rat)":[18],"liver-drug":[19],"interactions.":[20],"ISLs":[21],"are":[22],"multiscale":[23],"hierarchical.":[25],"A":[26],"medium":[27,116],"grain":[28,104],"Enzyme":[29],"Induction":[30],"mechanism":[31,101,130],"was":[32],"implemented.":[33],"Validation":[34],"(falsification)":[35],"complicated,":[37],"knowledge-based":[38],"models":[39,145],"requires":[40],"integrating":[41],"distinct":[42],"aspects":[43],"methods":[45],"for":[46,60,141],"multi-aspect":[47,71],"validation.":[48],"For":[49],"ISLs,":[50],"such":[51,146],"integration":[52],"has":[53],"not":[54],"been":[55],"straightforward.":[56],"Falsification":[57],"crucial":[59],"formulating,":[61],"testing,":[62],"iteratively":[64],"liver":[68,107],"mechanisms.":[69],"During":[70],"falsification,":[72],"the":[73,100],"authors":[74,90,123],"can":[75],"falsify":[76,112],"a":[77,92,115],"hypothesis":[78],"in":[79,86,96],"one":[80],"aspect":[81],"while":[82],"simultaneously":[83],"validating":[84],"it":[85,113],"another":[87],"aspect.":[88],"demonstrate":[91],"multi-scalar":[93],"validation/falsification":[94],"event":[95],"which":[97],"they":[98],"validate":[99],"against":[102,114],"coarse":[103],"measures":[105],"perfusate":[108],"drug":[109],"levels":[110],"grained":[117],"measure":[118],"hepatic":[120],"zonation.":[121],"also":[124],"discuss":[125],"how":[126],"falsification":[127],"guiding":[129],"(hypothesis)":[131],"refinement.":[132],"ability":[134],"to":[135],"scale":[136],"validation":[137],"efforts":[138],"necessary":[140],"effective":[142],"scientific":[143],"use":[144],"as":[147],"ISLs.":[148]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
