{"id":"https://openalex.org/W2130499759","doi":"https://doi.org/10.4018/jswis.2007040101","title":"Experience in Aligning AnatomicalOntologies","display_name":"Experience in Aligning AnatomicalOntologies","publication_year":2007,"publication_date":"2007-04-01","ids":{"openalex":"https://openalex.org/W2130499759","doi":"https://doi.org/10.4018/jswis.2007040101","mag":"2130499759","pmid":"https://pubmed.ncbi.nlm.nih.gov/18974854"},"language":"en","primary_location":{"id":"doi:10.4018/jswis.2007040101","is_oa":false,"landing_page_url":"https://doi.org/10.4018/jswis.2007040101","pdf_url":null,"source":{"id":"https://openalex.org/S181240966","display_name":"International Journal on Semantic Web and Information Systems","issn_l":"1552-6283","issn":["1552-6283","1552-6291"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320424","host_organization_name":"IGI Global","host_organization_lineage":["https://openalex.org/P4310320424"],"host_organization_lineage_names":["IGI Global"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal on Semantic Web and Information Systems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":null,"any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110294192","display_name":"Songmao Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Songmao Zhang","raw_affiliation_strings":["Chinese Academy of Sciences, China","Institute of Mathematics Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chinese Academy of Sciences, China","institution_ids":["https://openalex.org/I19820366"]},{"raw_affiliation_string":"Institute of Mathematics Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing, P. R. China","institution_ids":["https://openalex.org/I19820366"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073807945","display_name":"Olivier Bodenreider","orcid":"https://orcid.org/0000-0003-4769-4217"},"institutions":[{"id":"https://openalex.org/I2800548410","display_name":"United States National Library of Medicine","ror":"https://ror.org/0060t0j89","country_code":"US","type":"archive","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Olivier Bodenreider","raw_affiliation_strings":["U.S. National Library of Medicine, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"U.S. National Library of Medicine, USA","institution_ids":["https://openalex.org/I2800548410"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5110294192"],"corresponding_institution_ids":["https://openalex.org/I19820366"],"apc_list":null,"apc_paid":null,"fwci":3.3635,"has_fulltext":false,"cited_by_count":78,"citation_normalized_percentile":{"value":0.92964944,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"3","issue":"2","first_page":"1","last_page":"26"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8362687826156616},{"id":"https://openalex.org/keywords/rotation-formalisms-in-three-dimensions","display_name":"Rotation formalisms in three dimensions","score":0.6868330240249634},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5915543437004089},{"id":"https://openalex.org/keywords/schema","display_name":"Schema (genetic algorithms)","score":0.557819664478302},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5300778150558472},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5015478134155273},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.46609440445899963},{"id":"https://openalex.org/keywords/point","display_name":"Point (geometry)","score":0.4530082941055298},{"id":"https://openalex.org/keywords/schema-matching","display_name":"Schema matching","score":0.4197852313518524},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.15145331621170044},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.11038756370544434}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8362687826156616},{"id":"https://openalex.org/C171018156","wikidata":"https://www.wikidata.org/wiki/Q7370306","display_name":"Rotation formalisms in three dimensions","level":2,"score":0.6868330240249634},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5915543437004089},{"id":"https://openalex.org/C52146309","wikidata":"https://www.wikidata.org/wiki/Q7431116","display_name":"Schema (genetic algorithms)","level":2,"score":0.557819664478302},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5300778150558472},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5015478134155273},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.46609440445899963},{"id":"https://openalex.org/C28719098","wikidata":"https://www.wikidata.org/wiki/Q44946","display_name":"Point (geometry)","level":2,"score":0.4530082941055298},{"id":"https://openalex.org/C2777327318","wikidata":"https://www.wikidata.org/wiki/Q1408390","display_name":"Schema matching","level":3,"score":0.4197852313518524},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.15145331621170044},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.11038756370544434},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[],"locations_count":8,"locations":[{"id":"doi:10.4018/jswis.2007040101","is_oa":false,"landing_page_url":"https://doi.org/10.4018/jswis.2007040101","pdf_url":null,"source":{"id":"https://openalex.org/S181240966","display_name":"International Journal on Semantic Web and Information Systems","issn_l":"1552-6283","issn":["1552-6283","1552-6291"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320424","host_organization_name":"IGI Global","host_organization_lineage":["https://openalex.org/P4310320424"],"host_organization_lineage_names":["IGI Global"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal on Semantic Web and Information Systems","raw_type":"journal-article"},{"id":"pmid:18974854","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18974854","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International journal on Semantic Web and information systems","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.331.5805","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.331.5805","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://mor.nlm.nih.gov:8000/pubs/pdf/2007-ijswis-sz.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.649.1057","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.649.1057","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://mor.nlm.nih.gov/pubs/pdf/2007-ijswis-sz.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.912.1945","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.912.1945","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://mor.nlm.nih.gov//pubs/pdf/2007-ijswis-sz.pdf","raw_type":"text"},{"id":"pmh:oai:RePEc:igg:jswis0:v:3:y:2007:i:2:p:1-26","is_oa":false,"landing_page_url":"https://services.igi-global.com/resolvedoi/resolve.aspx?doi=10.4018/jswis.2007040101","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2575410","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Int J Semant Web Inf Syst","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:2575410","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2575410","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Int J Semant Web Inf Syst","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:2575410","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Int J Semant Web Inf Syst","raw_type":"Text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.7900000214576721,"display_name":"Quality Education"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W45387812","https://openalex.org/W99074691","https://openalex.org/W126925504","https://openalex.org/W1480180110","https://openalex.org/W1481690646","https://openalex.org/W1482102309","https://openalex.org/W1493568378","https://openalex.org/W1497682552","https://openalex.org/W1501979881","https://openalex.org/W1514903620","https://openalex.org/W1528190738","https://openalex.org/W1551684349","https://openalex.org/W1562099273","https://openalex.org/W1576479172","https://openalex.org/W1600475986","https://openalex.org/W1781737156","https://openalex.org/W1829379010","https://openalex.org/W1947751246","https://openalex.org/W1976119155","https://openalex.org/W1989264734","https://openalex.org/W2008896880","https://openalex.org/W2030220506","https://openalex.org/W2065196574","https://openalex.org/W2067893742","https://openalex.org/W2074639050","https://openalex.org/W2078288474","https://openalex.org/W2094258495","https://openalex.org/W2103260426","https://openalex.org/W2119733112","https://openalex.org/W2121345058","https://openalex.org/W2123703831","https://openalex.org/W2125001235","https://openalex.org/W2129609692","https://openalex.org/W2134363729","https://openalex.org/W2135831522","https://openalex.org/W2137946607","https://openalex.org/W2138105615","https://openalex.org/W2139135093","https://openalex.org/W2147993707","https://openalex.org/W2151155142","https://openalex.org/W2156510574","https://openalex.org/W2159583324","https://openalex.org/W2161549461","https://openalex.org/W2163670493","https://openalex.org/W2163685645","https://openalex.org/W2164996442","https://openalex.org/W2166243786","https://openalex.org/W2168080006","https://openalex.org/W2481375576","https://openalex.org/W3189960964"],"related_works":["https://openalex.org/W2160884547","https://openalex.org/W1528218860","https://openalex.org/W3208717180","https://openalex.org/W2406112091","https://openalex.org/W2125859764","https://openalex.org/W2014400548","https://openalex.org/W4301779090","https://openalex.org/W2029826694","https://openalex.org/W4298139853","https://openalex.org/W2016247499"],"abstract_inverted_index":{"An":[0],"ontology":[1],"is":[2,21,27,56,115],"a":[3,7,19,130,202,215,222],"formal":[4],"representation":[5,104],"of":[6,41,53,71,90,132,151,179,185,190,210,231],"domain":[8,14,20],"modeling":[9],"the":[10,13,39,72,78,87,93,99,121,143,161,183,188,239],"entities":[11],"in":[12,35,61],"and":[15,47,66,74,98,118,136,138,171,187,220,229,236],"their":[16],"relations.":[17],"When":[18],"represented":[22],"by":[23],"multiple":[24],"ontologies,":[25],"there":[26],"need":[28],"for":[29],"creating":[30],"mappings":[31,144],"among":[32],"these":[33,45],"ontologies":[34,46,65,83],"order":[36],"to":[37,57,67,111,176],"facilitate":[38],"integration":[40],"data":[42],"annotated":[43],"with":[44],"reasoning":[48],"across":[49],"ontologies.":[50],"The":[51,80,227],"objective":[52],"this":[54],"paper":[55],"recapitulate":[58],"our":[59,211,232],"experience":[60],"aligning":[62,112],"large":[63],"anatomical":[64,82],"reflect":[68],"on":[69],"some":[70],"issues":[73],"challenges":[75],"encountered":[76],"along":[77],"way.":[79],"four":[81],"under":[84],"investigation":[85],"are":[86,106,234],"Foundational":[88],"Model":[89],"Anatomy,":[91],"GALEN,":[92],"Adult":[94],"Mouse":[95],"Anatomical":[96],"Dictionary":[97],"NCI":[100],"Thesaurus.":[101],"Their":[102],"underlying":[103],"formalisms":[105],"all":[107],"different.":[108],"Our":[109],"approach":[110,233],"concepts":[113,191],"(directly)":[114],"automatic,":[116],"rule-based,":[117],"operates":[119],"at":[120],"schema":[122,224],"level,":[123],"generating":[124],"mostly":[125],"point-to-point":[126,177],"mappings.":[127],"It":[128,147],"uses":[129],"combination":[131],"domain-specific":[133,152,203],"lexical":[134],"techniques":[135,140],"structural":[137],"semantic":[139],"(to":[141],"validate":[142],"suggested":[145],"lexically).":[146],"also":[148,195],"takes":[149],"advantage":[150],"knowledge":[153,155,169],"(lexical":[154],"from":[156],"external":[157],"resources":[158],"such":[159],"as":[160,166,168],"Unified":[162],"Medical":[163],"Language":[164],"System,":[165],"well":[167],"augmentation":[170],"inference":[172],"techniques).":[173],"In":[174],"addition":[175],"mapping":[178,189],"concepts,":[180],"we":[181],"present":[182,207],"alignment":[184,200],"relationships":[186],"group-to-group.":[192],"We":[193,206],"have":[194],"successfully":[196],"tested":[197],"an":[198,208],"indirect":[199],"through":[201],"reference":[204],"ontology.":[205],"evaluation":[209],"techniques,":[212],"both":[213],"against":[214,221],"gold":[216],"standard":[217],"established":[218],"manually":[219],"generic":[223],"matching":[225],"system.":[226],"advantages":[228],"limitations":[230],"analyzed":[235],"discussed":[237],"throughout":[238],"paper.":[240]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":7}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
