{"id":"https://openalex.org/W2046855280","doi":"https://doi.org/10.4018/jkdb.2012010101","title":"Improved Feature Selection by Incorporating Gene Similarity into the LASSO","display_name":"Improved Feature Selection by Incorporating Gene Similarity into the LASSO","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W2046855280","doi":"https://doi.org/10.4018/jkdb.2012010101","mag":"2046855280"},"language":"en","primary_location":{"id":"doi:10.4018/jkdb.2012010101","is_oa":false,"landing_page_url":"https://doi.org/10.4018/jkdb.2012010101","pdf_url":null,"source":{"id":"https://openalex.org/S113982356","display_name":"International Journal of Knowledge Discovery in Bioinformatics","issn_l":"1947-9115","issn":["1947-9115","1947-9123"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320424","host_organization_name":"IGI Global","host_organization_lineage":["https://openalex.org/P4310320424"],"host_organization_lineage_names":["IGI Global"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Knowledge Discovery in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086684396","display_name":"Christopher E. Gillies","orcid":"https://orcid.org/0000-0002-5290-3880"},"institutions":[{"id":"https://openalex.org/I177721651","display_name":"Oakland University","ror":"https://ror.org/01ythxj32","country_code":"US","type":"education","lineage":["https://openalex.org/I177721651"]},{"id":"https://openalex.org/I5388228","display_name":"University of Rochester","ror":"https://ror.org/022kthw22","country_code":"US","type":"education","lineage":["https://openalex.org/I5388228"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher E. Gillies","raw_affiliation_strings":["Department of Computer Science and Engineering, Oakland University, Rochester, MI, USA","Department of Computer Science and Engineering, Oakland University, Rochester , MI, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Oakland University, Rochester, MI, USA","institution_ids":["https://openalex.org/I177721651"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, Oakland University, Rochester , MI, USA","institution_ids":["https://openalex.org/I5388228"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033766867","display_name":"Xiaoli Gao","orcid":"https://orcid.org/0000-0003-4908-1051"},"institutions":[{"id":"https://openalex.org/I177721651","display_name":"Oakland University","ror":"https://ror.org/01ythxj32","country_code":"US","type":"education","lineage":["https://openalex.org/I177721651"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaoli Gao","raw_affiliation_strings":["Department of Mathematics and Statistics, Oakland University, Rochester, MI, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, Oakland University, Rochester, MI, USA","institution_ids":["https://openalex.org/I177721651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040888997","display_name":"Nilesh Patel","orcid":"https://orcid.org/0000-0001-7543-8590"},"institutions":[{"id":"https://openalex.org/I177721651","display_name":"Oakland University","ror":"https://ror.org/01ythxj32","country_code":"US","type":"education","lineage":["https://openalex.org/I177721651"]},{"id":"https://openalex.org/I5388228","display_name":"University of Rochester","ror":"https://ror.org/022kthw22","country_code":"US","type":"education","lineage":["https://openalex.org/I5388228"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nilesh V. Patel","raw_affiliation_strings":["Department of Computer Science and Engineering, Oakland University, Rochester, MI, USA","Department of Computer Science and Engineering, Oakland University, Rochester , MI, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Oakland University, Rochester, MI, USA","institution_ids":["https://openalex.org/I177721651"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, Oakland University, Rochester , MI, USA","institution_ids":["https://openalex.org/I5388228"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008915640","display_name":"Mohammad-Reza Siadat","orcid":"https://orcid.org/0000-0002-7098-8304"},"institutions":[{"id":"https://openalex.org/I177721651","display_name":"Oakland University","ror":"https://ror.org/01ythxj32","country_code":"US","type":"education","lineage":["https://openalex.org/I177721651"]},{"id":"https://openalex.org/I5388228","display_name":"University of Rochester","ror":"https://ror.org/022kthw22","country_code":"US","type":"education","lineage":["https://openalex.org/I5388228"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mohammad-Reza Siadat","raw_affiliation_strings":["Department of Computer Science and Engineering, Oakland University, Rochester, MI, USA","Department of Computer Science and Engineering, Oakland University, Rochester , MI, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Oakland University, Rochester, MI, USA","institution_ids":["https://openalex.org/I177721651"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, Oakland University, Rochester , MI, USA","institution_ids":["https://openalex.org/I5388228"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090357414","display_name":"George D. Wilson","orcid":"https://orcid.org/0000-0003-3756-1701"},"institutions":[{"id":"https://openalex.org/I2799370151","display_name":"Beaumont Health","ror":"https://ror.org/05g2hd893","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799370151"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"George D. Wilson","raw_affiliation_strings":["Radiation Oncology Department and BioBank Department Beaumont Health System, Royal Oak, MI, USA","Radiation Oncology Department and BioBank Department Beaumont Health System, Royal Oak, MI, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Radiation Oncology Department and BioBank Department Beaumont Health System, Royal Oak, MI, USA","institution_ids":["https://openalex.org/I2799370151"]},{"raw_affiliation_string":"Radiation Oncology Department and BioBank Department Beaumont Health System, Royal Oak, MI, USA#TAB#","institution_ids":["https://openalex.org/I2799370151"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.09080967,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"3","issue":"1","first_page":"1","last_page":"22"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9850999712944031,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/lasso","display_name":"Lasso (programming language)","score":0.8844203948974609},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.6901036500930786},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6038615703582764},{"id":"https://openalex.org/keywords/curse-of-dimensionality","display_name":"Curse of dimensionality","score":0.5710815787315369},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.558343231678009},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5109723806381226},{"id":"https://openalex.org/keywords/personalized-medicine","display_name":"Personalized medicine","score":0.457985520362854},{"id":"https://openalex.org/keywords/elastic-net-regularization","display_name":"Elastic net regularization","score":0.4304403066635132},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.42581039667129517},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4247274696826935},{"id":"https://openalex.org/keywords/coordinate-descent","display_name":"Coordinate descent","score":0.42318540811538696},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3907839059829712},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.36404356360435486},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.24831801652908325},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.207901269197464}],"concepts":[{"id":"https://openalex.org/C37616216","wikidata":"https://www.wikidata.org/wiki/Q3218363","display_name":"Lasso (programming language)","level":2,"score":0.8844203948974609},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.6901036500930786},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6038615703582764},{"id":"https://openalex.org/C111030470","wikidata":"https://www.wikidata.org/wiki/Q1430460","display_name":"Curse of dimensionality","level":2,"score":0.5710815787315369},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.558343231678009},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5109723806381226},{"id":"https://openalex.org/C32220436","wikidata":"https://www.wikidata.org/wiki/Q2072214","display_name":"Personalized medicine","level":2,"score":0.457985520362854},{"id":"https://openalex.org/C203868755","wikidata":"https://www.wikidata.org/wiki/Q5353562","display_name":"Elastic net regularization","level":3,"score":0.4304403066635132},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.42581039667129517},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4247274696826935},{"id":"https://openalex.org/C157553263","wikidata":"https://www.wikidata.org/wiki/Q5168004","display_name":"Coordinate descent","level":2,"score":0.42318540811538696},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3907839059829712},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36404356360435486},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.24831801652908325},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.207901269197464},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.4018/jkdb.2012010101","is_oa":false,"landing_page_url":"https://doi.org/10.4018/jkdb.2012010101","pdf_url":null,"source":{"id":"https://openalex.org/S113982356","display_name":"International Journal of Knowledge Discovery in Bioinformatics","issn_l":"1947-9115","issn":["1947-9115","1947-9123"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320424","host_organization_name":"IGI Global","host_organization_lineage":["https://openalex.org/P4310320424"],"host_organization_lineage_names":["IGI Global"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Knowledge Discovery in Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:RePEc:igg:jkdb00:v:3:y:2012:i:1:p:1-22","is_oa":false,"landing_page_url":"http://services.igi-global.com/resolvedoi/resolve.aspx?doi=10.4018/jkdb.2012010101","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W124543461","https://openalex.org/W1668989518","https://openalex.org/W1913707124","https://openalex.org/W1993528080","https://openalex.org/W2020925091","https://openalex.org/W2043478128","https://openalex.org/W2045741102","https://openalex.org/W2058815839","https://openalex.org/W2084168100","https://openalex.org/W2096939566","https://openalex.org/W2103017472","https://openalex.org/W2109363337","https://openalex.org/W2117805756","https://openalex.org/W2119387367","https://openalex.org/W2121211805","https://openalex.org/W2126225210","https://openalex.org/W2127563440","https://openalex.org/W2135046866","https://openalex.org/W2138019504","https://openalex.org/W2159482845","https://openalex.org/W2165133710","https://openalex.org/W2230939080","https://openalex.org/W2296319761","https://openalex.org/W2950225692","https://openalex.org/W3105543546","https://openalex.org/W3125904670","https://openalex.org/W4250589301","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W2468272465","https://openalex.org/W2429564919","https://openalex.org/W757986597","https://openalex.org/W4212910148","https://openalex.org/W4213314600","https://openalex.org/W4210804200","https://openalex.org/W4285814086","https://openalex.org/W3123944750","https://openalex.org/W2787225985","https://openalex.org/W2999956516"],"abstract_inverted_index":{"Personalized":[0],"medicine":[1,24],"is":[2,25,33],"customizing":[3],"treatments":[4],"to":[5,14,46,60,73,95,126,146],"a":[6,76,87,122,177,192],"patient\u2019s":[7],"genetic":[8],"profile":[9],"and":[10,41,78,151,163,173],"has":[11],"the":[12,47,74,96,128,136,147,161,186],"potential":[13],"revolutionize":[15],"medical":[16],"practice.":[17],"An":[18],"important":[19,171],"process":[20],"used":[21],"in":[22,103,167],"personalized":[23],"gene":[26,30,174,194],"expression":[27,31,195],"profiling.":[28],"Analyzing":[29],"profiles":[32],"difficult,":[34],"because":[35],"there":[36],"are":[37,101],"usually":[38],"few":[39],"patients":[40],"thousands":[42],"of":[43,49,98,169,180,188],"genes,":[44],"leading":[45],"curse":[48],"dimensionality.":[50],"To":[51,132],"combat":[52],"this":[53],"problem,":[54],"researchers":[55],"suggest":[56],"using":[57],"prior":[58],"knowledge":[59],"enhance":[61],"feature":[62],"selection":[63,79,97],"for":[64,176],"supervised":[65],"learning":[66],"algorithms.":[67],"The":[68,107,156],"authors":[69,137],"propose":[70],"an":[71,152],"enhancement":[72,92],"LASSO,":[75],"shrinkage":[77],"technique":[80],"that":[81,100],"induces":[82],"parameter":[83],"sparsity":[84],"by":[85,114],"penalizing":[86,115],"model\u2019s":[88],"objective":[89,130],"function.":[90,131],"Their":[91],"gives":[93],"preference":[94],"genes":[99,113,172],"involved":[102],"similar":[104,112],"biological":[105],"processes.":[106],"authors\u2019":[108,157],"modified":[109],"LASSO":[110,149,154,165],"selects":[111],"interaction":[116,153,164],"terms":[117,168],"between":[118],"genes.":[119],"They":[120,183],"devise":[121],"coordinate":[123],"descent":[124],"algorithm":[125],"minimize":[127],"corresponding":[129],"evaluate":[133],"their":[134,144,189],"method,":[135],"created":[138],"simulation":[139],"data":[140,196],"where":[141],"they":[142],"compared":[143],"model":[145,150,158],"standard":[148,162],"model.":[155],"outperformed":[159],"both":[160],"models":[166],"detecting":[170],"interactions":[175],"reasonable":[178],"number":[179],"training":[181],"samples.":[182],"also":[184],"demonstrated":[185],"performance":[187],"method":[190],"on":[191],"real":[193],"set":[197],"from":[198],"lung":[199],"cancer":[200],"cell":[201],"lines.":[202]},"counts_by_year":[{"year":2020,"cited_by_count":1}],"updated_date":"2026-06-11T06:19:23.411458","created_date":"2025-10-10T00:00:00"}
