{"id":"https://openalex.org/W1980528394","doi":"https://doi.org/10.4018/jkdb.2010100204","title":"Mapping Affymetrix Microarray Probes to the Rat Genome via a Persistent Index","display_name":"Mapping Affymetrix Microarray Probes to the Rat Genome via a Persistent Index","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W1980528394","doi":"https://doi.org/10.4018/jkdb.2010100204","mag":"1980528394"},"language":"en","primary_location":{"id":"doi:10.4018/jkdb.2010100204","is_oa":false,"landing_page_url":"https://doi.org/10.4018/jkdb.2010100204","pdf_url":null,"source":{"id":"https://openalex.org/S113982356","display_name":"International Journal of Knowledge Discovery in Bioinformatics","issn_l":"1947-9115","issn":["1947-9115","1947-9123"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320424","host_organization_name":"IGI Global","host_organization_lineage":["https://openalex.org/P4310320424"],"host_organization_lineage_names":["IGI Global"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Knowledge Discovery in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081484042","display_name":"Susan Fairley","orcid":"https://orcid.org/0000-0001-9425-0788"},"institutions":[{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Susan Fairley","raw_affiliation_strings":["University of Glasgow, UK"],"affiliations":[{"raw_affiliation_string":"University of Glasgow, UK","institution_ids":["https://openalex.org/I7882870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062071364","display_name":"John McClure","orcid":"https://orcid.org/0000-0003-4839-5462"},"institutions":[{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"John D. McClure","raw_affiliation_strings":["University of Glasgow, UK"],"affiliations":[{"raw_affiliation_string":"University of Glasgow, UK","institution_ids":["https://openalex.org/I7882870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039341054","display_name":"Neil Hanlon","orcid":null},"institutions":[{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Neil Hanlon","raw_affiliation_strings":["University of Glasgow, UK"],"affiliations":[{"raw_affiliation_string":"University of Glasgow, UK","institution_ids":["https://openalex.org/I7882870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012385206","display_name":"Rob Irving","orcid":null},"institutions":[{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Rob Irving","raw_affiliation_strings":["University of Glasgow, UK"],"affiliations":[{"raw_affiliation_string":"University of Glasgow, UK","institution_ids":["https://openalex.org/I7882870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025769511","display_name":"Martin McBride","orcid":"https://orcid.org/0000-0002-6323-124X"},"institutions":[{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Martin W. McBride","raw_affiliation_strings":["University of Glasgow, UK"],"affiliations":[{"raw_affiliation_string":"University of Glasgow, UK","institution_ids":["https://openalex.org/I7882870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017081040","display_name":"Anna F. Dominiczak","orcid":"https://orcid.org/0000-0003-4913-3608"},"institutions":[{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Anna F. Dominiczak","raw_affiliation_strings":["University of Glasgow, UK"],"affiliations":[{"raw_affiliation_string":"University of Glasgow, UK","institution_ids":["https://openalex.org/I7882870"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041951277","display_name":"Ela Hunt","orcid":"https://orcid.org/0000-0001-7379-847X"},"institutions":[{"id":"https://openalex.org/I181647926","display_name":"University of Strathclyde","ror":"https://ror.org/00n3w3b69","country_code":"GB","type":"education","lineage":["https://openalex.org/I181647926"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ela Hunt","raw_affiliation_strings":["University of Strathclyde, UK"],"affiliations":[{"raw_affiliation_string":"University of Strathclyde, UK","institution_ids":["https://openalex.org/I181647926"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5081484042"],"corresponding_institution_ids":["https://openalex.org/I7882870"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.06153846,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"1","issue":"1","first_page":"48","last_page":"65"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ensembl","display_name":"Ensembl","score":0.8966739177703857},{"id":"https://openalex.org/keywords/heuristics","display_name":"Heuristics","score":0.6845329999923706},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.630685567855835},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6267287731170654},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5823149681091309},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4677109122276306},{"id":"https://openalex.org/keywords/gene-chip-analysis","display_name":"Gene chip analysis","score":0.4337294101715088},{"id":"https://openalex.org/keywords/index","display_name":"Index (typography)","score":0.4316723942756653},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4111083447933197},{"id":"https://openalex.org/keywords/microarray","display_name":"Microarray","score":0.35934287309646606},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.26547208428382874},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.2585930824279785},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21868973970413208},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1875540316104889},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.11072182655334473},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10269087553024292},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.0663871169090271}],"concepts":[{"id":"https://openalex.org/C141674004","wikidata":"https://www.wikidata.org/wiki/Q1344256","display_name":"Ensembl","level":5,"score":0.8966739177703857},{"id":"https://openalex.org/C127705205","wikidata":"https://www.wikidata.org/wiki/Q5748245","display_name":"Heuristics","level":2,"score":0.6845329999923706},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.630685567855835},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6267287731170654},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5823149681091309},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4677109122276306},{"id":"https://openalex.org/C24361400","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Gene chip analysis","level":5,"score":0.4337294101715088},{"id":"https://openalex.org/C2777382242","wikidata":"https://www.wikidata.org/wiki/Q6017816","display_name":"Index (typography)","level":2,"score":0.4316723942756653},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4111083447933197},{"id":"https://openalex.org/C186836561","wikidata":"https://www.wikidata.org/wiki/Q1931516","display_name":"Microarray","level":4,"score":0.35934287309646606},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.26547208428382874},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.2585930824279785},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21868973970413208},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1875540316104889},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.11072182655334473},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10269087553024292},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0663871169090271},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.4018/jkdb.2010100204","is_oa":false,"landing_page_url":"https://doi.org/10.4018/jkdb.2010100204","pdf_url":null,"source":{"id":"https://openalex.org/S113982356","display_name":"International Journal of Knowledge Discovery in Bioinformatics","issn_l":"1947-9115","issn":["1947-9115","1947-9123"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320424","host_organization_name":"IGI Global","host_organization_lineage":["https://openalex.org/P4310320424"],"host_organization_lineage_names":["IGI Global"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Knowledge Discovery in Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:RePEc:igg:jkdb00:v:1:y:2010:i:1:p:48-65","is_oa":false,"landing_page_url":"http://services.igi-global.com/resolvedoi/resolve.aspx?doi=10.4018/jkdb.2010100204","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:eprints.gla.ac.uk:34129","is_oa":false,"landing_page_url":"http://eprints.gla.ac.uk/34129/","pdf_url":null,"source":{"id":"https://openalex.org/S4210235606","display_name":"ENLIGHTEN (Jurnal Bimbingan dan Konseling Islam)","issn_l":"2622-8912","issn":["2622-8912","2622-8920"],"is_oa":false,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W107946537","https://openalex.org/W109756832","https://openalex.org/W164593260","https://openalex.org/W938539187","https://openalex.org/W1484872771","https://openalex.org/W1490635997","https://openalex.org/W1494419150","https://openalex.org/W1525912665","https://openalex.org/W1562664579","https://openalex.org/W1609815973","https://openalex.org/W1869957243","https://openalex.org/W1913179380","https://openalex.org/W1987396468","https://openalex.org/W1990061958","https://openalex.org/W2028445324","https://openalex.org/W2054800386","https://openalex.org/W2066849581","https://openalex.org/W2097040991","https://openalex.org/W2100639130","https://openalex.org/W2107903949","https://openalex.org/W2108543860","https://openalex.org/W2108706843","https://openalex.org/W2110112697","https://openalex.org/W2110965044","https://openalex.org/W2115321097","https://openalex.org/W2117133527","https://openalex.org/W2118782342","https://openalex.org/W2124690658","https://openalex.org/W2131657764","https://openalex.org/W2135827569","https://openalex.org/W2136145671","https://openalex.org/W2142619120","https://openalex.org/W2143953211","https://openalex.org/W2148911704","https://openalex.org/W2158714788","https://openalex.org/W2159373567","https://openalex.org/W2165156013","https://openalex.org/W2168314697","https://openalex.org/W4210241463","https://openalex.org/W4230932396","https://openalex.org/W4285719527","https://openalex.org/W4293196852"],"related_works":["https://openalex.org/W2427451101","https://openalex.org/W2361788533","https://openalex.org/W2020723406","https://openalex.org/W2133325700","https://openalex.org/W1491323697","https://openalex.org/W2006138378","https://openalex.org/W1685781282","https://openalex.org/W114485947","https://openalex.org/W1986739689","https://openalex.org/W2057566290"],"abstract_inverted_index":{"A":[0],"probe":[1],"mapping":[2,106,111],"technique":[3],"using":[4],"a":[5,9],"novel":[6,116],"implementation":[7],"of":[8,29,34,53,129,140],"persistent":[10],"q-gram":[11,147],"index":[12],"was":[13,81],"developed.":[14],"It":[15],"guarantees":[16],"to":[17,83,99,124],"find":[18],"all":[19],"matches":[20,72],"that":[21],"meet":[22],"certain":[23],"definitions.":[24],"These":[25],"include":[26],"exact":[27,51],"matching":[28,38,52],"the":[30,39,63,75,85,91,100,105,109,127,138,141],"central":[31,40],"19":[32,41],"bases":[33,42],"25":[35],"base":[36],"probes,":[37],"with":[43,59,104],"at":[44],"most":[45],"one":[46],"or":[47,70],"three":[48],"mismatches":[49],"and":[50,61],"any":[54],"16":[55,78],"bases.":[56],"In":[57],"comparison":[58],"BLAST":[60],"BLAT,":[62],"new":[64,110],"methods":[65],"were":[66],"either":[67],"significantly":[68],"faster":[69],"identified":[71],"missed":[73],"by":[74],"heuristics.":[76],"The":[77,135],"bp":[79],"method":[80],"used":[82],"map":[84],"342,410":[86],"perfect":[87],"match":[88],"probes":[89],"from":[90,107],"Affymetrix":[92],"GeneChip":[93],"Rat":[94],"Genome":[95],"230":[96],"2.0":[97],"Array":[98],"genome.":[101],"When":[102],"compared":[103],"Ensembl,":[108],"included":[112],"over":[113],"seven":[114],"million":[115],"matches,":[117],"providing":[118],"additional":[119],"evidence":[120],"for":[121],"researchers":[122],"wishing":[123],"further":[125],"investigate":[126],"sources":[128],"signals":[130],"measured":[131],"in":[132],"microarray":[133],"experiments.":[134],"results":[136],"demonstrate":[137],"practicality":[139],"index,":[142],"which":[143],"could":[144],"support":[145],"other":[146],"based":[148],"algorithms.":[149]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
