{"id":"https://openalex.org/W2089818266","doi":"https://doi.org/10.4018/jghpc.2009010104","title":"Large-Scale Co-Phylogenetic Analysis on the Grid","display_name":"Large-Scale Co-Phylogenetic Analysis on the Grid","publication_year":2009,"publication_date":"2009-01-01","ids":{"openalex":"https://openalex.org/W2089818266","doi":"https://doi.org/10.4018/jghpc.2009010104","mag":"2089818266"},"language":"en","primary_location":{"id":"doi:10.4018/jghpc.2009010104","is_oa":false,"landing_page_url":"https://doi.org/10.4018/jghpc.2009010104","pdf_url":null,"source":{"id":"https://openalex.org/S43307632","display_name":"International Journal of Grid and High Performance Computing","issn_l":"1938-0259","issn":["1938-0259","1938-0267"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320424","host_organization_name":"IGI Global","host_organization_lineage":["https://openalex.org/P4310320424"],"host_organization_lineage_names":["IGI Global"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Grid and High Performance Computing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069082993","display_name":"Heinz Stockinger","orcid":"https://orcid.org/0000-0003-4666-7719"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Heinz Stockinger","raw_affiliation_strings":["Swiss Institute of Bioinformatics, Switzerland","Swiss Institute of Bioinformatics, Switzerland#TAB#"],"affiliations":[{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Switzerland#TAB#","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012073525","display_name":"Alexander F. Auch","orcid":null},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alexander F. Auch","raw_affiliation_strings":["University of T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"University of T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056895519","display_name":"Markus G\u00f6ker","orcid":"https://orcid.org/0000-0002-5144-6200"},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Markus G\u00f6ker","raw_affiliation_strings":["University of T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"University of T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041087984","display_name":"Jan P. Meier\u2010Kolthoff","orcid":"https://orcid.org/0000-0001-9105-9814"},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jan Meier-Kolthoff","raw_affiliation_strings":["University of T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"University of T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025640090","display_name":"Alexandros Stamatakis","orcid":"https://orcid.org/0000-0003-0353-0691"},"institutions":[{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alexandros Stamatakis","raw_affiliation_strings":["Ludwig-Maximilians-University Munich, Germany","Ludwig- Maximilians-University Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Ludwig-Maximilians-University Munich, Germany","institution_ids":["https://openalex.org/I8204097"]},{"raw_affiliation_string":"Ludwig- Maximilians-University Munich, Germany","institution_ids":["https://openalex.org/I8204097"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5069082993"],"corresponding_institution_ids":["https://openalex.org/I12708293"],"apc_list":null,"apc_paid":null,"fwci":1.9996,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.87459148,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"1","issue":"1","first_page":"39","last_page":"54"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11354","display_name":"Evolution and Paleontology Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11354","display_name":"Evolution and Paleontology Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.9001343846321106},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.6735270619392395},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5865135788917542},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.5535941123962402},{"id":"https://openalex.org/keywords/embarrassingly-parallel","display_name":"Embarrassingly parallel","score":0.5475982427597046},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.5352035164833069},{"id":"https://openalex.org/keywords/phylogenetic-network","display_name":"Phylogenetic network","score":0.49071967601776123},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3358684182167053},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3313802480697632},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.2673764228820801},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1793534755706787},{"id":"https://openalex.org/keywords/parallel-algorithm","display_name":"Parallel algorithm","score":0.16629531979560852},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.11223584413528442},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09522882103919983}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.9001343846321106},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.6735270619392395},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5865135788917542},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.5535941123962402},{"id":"https://openalex.org/C126909462","wikidata":"https://www.wikidata.org/wiki/Q5369501","display_name":"Embarrassingly parallel","level":3,"score":0.5475982427597046},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.5352035164833069},{"id":"https://openalex.org/C26619641","wikidata":"https://www.wikidata.org/wiki/Q3142246","display_name":"Phylogenetic network","level":4,"score":0.49071967601776123},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3358684182167053},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3313802480697632},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.2673764228820801},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1793534755706787},{"id":"https://openalex.org/C120373497","wikidata":"https://www.wikidata.org/wiki/Q1087987","display_name":"Parallel algorithm","level":2,"score":0.16629531979560852},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.11223584413528442},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09522882103919983},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.4018/jghpc.2009010104","is_oa":false,"landing_page_url":"https://doi.org/10.4018/jghpc.2009010104","pdf_url":null,"source":{"id":"https://openalex.org/S43307632","display_name":"International Journal of Grid and High Performance Computing","issn_l":"1938-0259","issn":["1938-0259","1938-0267"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320424","host_organization_name":"IGI Global","host_organization_lineage":["https://openalex.org/P4310320424"],"host_organization_lineage_names":["IGI Global"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Grid and High Performance Computing","raw_type":"journal-article"},{"id":"pmh:oai:RePEc:igg:jghpc0:v:1:y:2009:i:1:p:39-54","is_oa":false,"landing_page_url":"http://services.igi-global.com/resolvedoi/resolve.aspx?doi=10.4018/jghpc.2009010104","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4000000059604645,"display_name":"Climate action","id":"https://metadata.un.org/sdg/13"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1968421558","https://openalex.org/W1969128841","https://openalex.org/W2002299650","https://openalex.org/W2028706992","https://openalex.org/W2063579396","https://openalex.org/W2076215076","https://openalex.org/W2101464940","https://openalex.org/W2103088017","https://openalex.org/W2105936849","https://openalex.org/W2106179083","https://openalex.org/W2106882534","https://openalex.org/W2110468786","https://openalex.org/W2115950051","https://openalex.org/W2124310341","https://openalex.org/W2127847431","https://openalex.org/W2128520958","https://openalex.org/W2129687362","https://openalex.org/W2138798117","https://openalex.org/W2146058063","https://openalex.org/W2158714788","https://openalex.org/W2162282699","https://openalex.org/W2162604452","https://openalex.org/W2168696662","https://openalex.org/W2408504390","https://openalex.org/W3145853936"],"related_works":["https://openalex.org/W4254268221","https://openalex.org/W147282674","https://openalex.org/W2951650999","https://openalex.org/W2038264393","https://openalex.org/W2840568513","https://openalex.org/W2112400707","https://openalex.org/W4300585845","https://openalex.org/W2132010001","https://openalex.org/W2101991559","https://openalex.org/W2152997891"],"abstract_inverted_index":{"Phylogenetic":[0],"data":[1,110],"analysis":[2,123],"represents":[3],"an":[4,65,77],"extremely":[5],"compute-intensive":[6],"area":[7],"of":[8,22,97,129,147],"Bioinformatics":[9],"and":[10,17,36,49,87,106,142],"thus":[11],"requires":[12],"high-performance":[13],"technologies.":[14],"Another":[15],"compute-":[16],"memory-intensive":[18],"problem":[19,131],"is":[20,64,132],"that":[21,68,100,120],"hostparasite":[23],"co-phylogenetic":[24,74,122],"analysis:":[25],"given":[26],"two":[27],"phylogenetic":[28],"trees,":[29],"one":[30,37],"for":[31,38],"the":[32,44,83,126,130,144],"hosts":[33],"(e.g.,":[34,42],"mammals)":[35],"their":[39],"respective":[40],"parasites":[41],"lice)":[43],"question":[45],"arises":[46],"whether":[47],"host":[48],"parasite":[50],"trees":[51],"are":[52],"more":[53],"similar":[54],"to":[55,71,138],"each":[56],"other":[57],"than":[58],"expected":[59],"by":[60],"chance":[61],"alone.":[62],"CopyCat":[63],"easy-to-use":[66],"tool":[67,119],"allows":[69],"biologists":[70],"conduct":[72],"such":[73],"studies":[75],"within":[76],"elaborate":[78],"statistical":[79],"framework":[80],"based":[81],"on":[82],"highly":[84],"optimized":[85],"sequential":[86],"parallel":[88],"A":[89],"xParafit":[90],"program.":[91],"We":[92],"have":[93],"developed":[94,114],"enhanced":[95],"versions":[96],"these":[98],"tools":[99],"efficiently":[101],"exploit":[102],"a":[103,115,139],"Grid":[104,141],"environment":[105],"therefore":[107],"facilitate":[108],"large-scale":[109],"analyses.":[111,150],"Furthermore,":[112],"we":[113],"freely":[116],"accessible":[117],"client":[118],"provides":[121],"capabilities.":[124],"Since":[125],"computational":[127,140],"bulk":[128],"embarrassingly":[133],"parallel,":[134],"it":[135],"fits":[136],"well":[137],"reduces":[143],"response":[145],"time":[146],"large":[148],"scale":[149]},"counts_by_year":[{"year":2012,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
