{"id":"https://openalex.org/W2094347450","doi":"https://doi.org/10.4018/jdm.2006040101","title":"Preparing Clinical Text for Use in Biomedical Research","display_name":"Preparing Clinical Text for Use in Biomedical Research","publication_year":2006,"publication_date":"2006-04-01","ids":{"openalex":"https://openalex.org/W2094347450","doi":"https://doi.org/10.4018/jdm.2006040101","mag":"2094347450"},"language":"en","primary_location":{"id":"doi:10.4018/jdm.2006040101","is_oa":false,"landing_page_url":"https://doi.org/10.4018/jdm.2006040101","pdf_url":null,"source":{"id":"https://openalex.org/S73024538","display_name":"Journal of Database Management","issn_l":"1063-8016","issn":["1063-8016","1533-8010"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320424","host_organization_name":"IGI Global","host_organization_lineage":["https://openalex.org/P4310320424"],"host_organization_lineage_names":["IGI Global"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Database Management","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057902242","display_name":"John Pestian","orcid":"https://orcid.org/0000-0001-5998-249X"},"institutions":[{"id":"https://openalex.org/I63135867","display_name":"University of Cincinnati","ror":"https://ror.org/01e3m7079","country_code":"US","type":"education","lineage":["https://openalex.org/I63135867"]},{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"John P. Pestian","raw_affiliation_strings":["Cincinnati Children\u2019s Hospital Medical Center, University of Cincinnati, USA"],"affiliations":[{"raw_affiliation_string":"Cincinnati Children\u2019s Hospital Medical Center, University of Cincinnati, USA","institution_ids":["https://openalex.org/I1285204247","https://openalex.org/I63135867"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013020898","display_name":"\u0141ukasz Itert","orcid":null},"institutions":[{"id":"https://openalex.org/I3019271933","display_name":"Nicolaus Copernicus University","ror":"https://ror.org/0102mm775","country_code":"PL","type":"education","lineage":["https://openalex.org/I3019271933"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Lukasz Itert","raw_affiliation_strings":["Nicolaus Copernicus University, Torun, Poland"],"affiliations":[{"raw_affiliation_string":"Nicolaus Copernicus University, Torun, Poland","institution_ids":["https://openalex.org/I3019271933"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026585047","display_name":"Charlotte Anderson","orcid":"https://orcid.org/0000-0001-8174-122X"},"institutions":[{"id":"https://openalex.org/I63135867","display_name":"University of Cincinnati","ror":"https://ror.org/01e3m7079","country_code":"US","type":"education","lineage":["https://openalex.org/I63135867"]},{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Charlotte Anderson","raw_affiliation_strings":["Cincinnati Children\u2019s Hospital Medical Center, University of Cincinnati, USA"],"affiliations":[{"raw_affiliation_string":"Cincinnati Children\u2019s Hospital Medical Center, University of Cincinnati, USA","institution_ids":["https://openalex.org/I1285204247","https://openalex.org/I63135867"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081855156","display_name":"W\u0142odzis\u0142aw Duch","orcid":"https://orcid.org/0000-0001-7882-4729"},"institutions":[{"id":"https://openalex.org/I3019271933","display_name":"Nicolaus Copernicus University","ror":"https://ror.org/0102mm775","country_code":"PL","type":"education","lineage":["https://openalex.org/I3019271933"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Wlodzislaw Duch","raw_affiliation_strings":["Nicolaus Copernicus University, Torun, Poland"],"affiliations":[{"raw_affiliation_string":"Nicolaus Copernicus University, Torun, Poland","institution_ids":["https://openalex.org/I3019271933"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5057902242"],"corresponding_institution_ids":["https://openalex.org/I1285204247","https://openalex.org/I63135867"],"apc_list":null,"apc_paid":null,"fwci":2.1866,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.87871761,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"17","issue":"2","first_page":"1","last_page":"11"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11719","display_name":"Data Quality and Management","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11719","display_name":"Data Quality and Management","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10350","display_name":"Electronic Health Records Systems","score":0.9781000018119812,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9595000147819519,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/medical-record","display_name":"Medical record","score":0.5644809007644653},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.48981043696403503},{"id":"https://openalex.org/keywords/meaning","display_name":"Meaning (existential)","score":0.48948895931243896},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.46918487548828125},{"id":"https://openalex.org/keywords/medical-education","display_name":"Medical education","score":0.3580682873725891},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3476608395576477},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.33662083745002747},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.2314857840538025},{"id":"https://openalex.org/keywords/radiology","display_name":"Radiology","score":0.12929508090019226}],"concepts":[{"id":"https://openalex.org/C195910791","wikidata":"https://www.wikidata.org/wiki/Q1324077","display_name":"Medical record","level":2,"score":0.5644809007644653},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.48981043696403503},{"id":"https://openalex.org/C2780876879","wikidata":"https://www.wikidata.org/wiki/Q3054749","display_name":"Meaning (existential)","level":2,"score":0.48948895931243896},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.46918487548828125},{"id":"https://openalex.org/C509550671","wikidata":"https://www.wikidata.org/wiki/Q126945","display_name":"Medical education","level":1,"score":0.3580682873725891},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3476608395576477},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.33662083745002747},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.2314857840538025},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.12929508090019226},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.4018/jdm.2006040101","is_oa":false,"landing_page_url":"https://doi.org/10.4018/jdm.2006040101","pdf_url":null,"source":{"id":"https://openalex.org/S73024538","display_name":"Journal of Database Management","issn_l":"1063-8016","issn":["1063-8016","1533-8010"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320424","host_organization_name":"IGI Global","host_organization_lineage":["https://openalex.org/P4310320424"],"host_organization_lineage_names":["IGI Global"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Database Management","raw_type":"journal-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.214.8000","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.214.8000","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.fizyka.umk.pl/publications/kmk/PreparingClinicalTexts-Pestian05.pdf","raw_type":"text"},{"id":"pmh:oai:RePEc:igg:jdm000:v:17:y:2006:i:2:p:1-11","is_oa":false,"landing_page_url":"http://services.igi-global.com/resolvedoi/resolve.aspx?doi=10.4018/jdm.2006040101","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.6700000166893005}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":29,"referenced_works":["https://openalex.org/W20181313","https://openalex.org/W34205231","https://openalex.org/W101452087","https://openalex.org/W152117303","https://openalex.org/W182831726","https://openalex.org/W198258669","https://openalex.org/W1262131959","https://openalex.org/W1516896160","https://openalex.org/W1522755305","https://openalex.org/W1547086561","https://openalex.org/W1558796178","https://openalex.org/W1574901103","https://openalex.org/W1600806036","https://openalex.org/W1687743765","https://openalex.org/W1756650108","https://openalex.org/W1797933945","https://openalex.org/W1975937116","https://openalex.org/W1990530231","https://openalex.org/W2019914024","https://openalex.org/W2045905355","https://openalex.org/W2074773343","https://openalex.org/W2102039730","https://openalex.org/W2127595928","https://openalex.org/W2129404933","https://openalex.org/W2163953154","https://openalex.org/W2395999767","https://openalex.org/W2407552578","https://openalex.org/W2979401726","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2366107444","https://openalex.org/W4388145910","https://openalex.org/W1976205134","https://openalex.org/W2381570729","https://openalex.org/W4248336175","https://openalex.org/W3009369890","https://openalex.org/W2031260042","https://openalex.org/W2391445434","https://openalex.org/W4312490297","https://openalex.org/W2062212388"],"abstract_inverted_index":{"Approximately":[0],"57":[1],"different":[2],"types":[3],"of":[4,28,35,45,70,74,104,165,171],"clinical":[5,57,75,79,156],"annotations":[6,13,65],"construct":[7],"a":[8,36,67,125,136],"patient\u2019s":[9],"medical":[10,30,140],"record.":[11],"These":[12,38],"include":[14],"radiology":[15],"reports,":[16],"discharge":[17],"summaries,":[18],"and":[19,21,77,186],"surgical":[20],"nursing":[22],"notes.":[23],"Hospitals":[24],"typically":[25],"produce":[26],"millions":[27],"text-based":[29],"records":[31,39],"over":[32],"the":[33,43,78,102,166,172],"course":[34],"year.":[37],"are":[40,49],"essential":[41],"for":[42,56,153],"delivery":[44,80,103],"care,":[46],"but":[47],"many":[48,89,170],"underutilized":[50],"or":[51,97],"not":[52,92,99],"utilized":[53],"at":[54],"all":[55],"research.":[58],"The":[59],"textual":[60],"data":[61,91,98,183,187],"found":[62],"in":[63,88,177],"these":[64],"is":[66],"rich":[68,162],"source":[69,151],"insights":[71],"into":[72],"aspects":[73],"care":[76,105],"system.":[81],"Recent":[82],"regulatory":[83],"actions,":[84],"however,":[85],"require":[86],"that,":[87],"cases,":[90],"obtained":[93],"through":[94],"informed":[95],"consent":[96],"related":[100],"to":[101,112],"must":[106],"be":[107,120],"made":[108],"anonymous":[109],"(as":[110],"referred":[111],"by":[113],"regulators":[114],"as":[115,182],"harmless),":[116],"before":[117],"they":[118],"can":[119],"used.":[121],"This":[122],"article":[123],"describes":[124],"practical":[126],"approach":[127],"with":[128,142,169],"which":[129],"Cincinnati":[130],"Children\u2019s":[131],"Hospital":[132],"Medical":[133],"Center":[134],"(CCHMC),":[135],"large":[137],"pediatric":[138,155],"academic":[139],"center":[141],"more":[143],"than":[144],"761,000":[145],"annual":[146],"patient":[147],"encounters,":[148],"developed":[149],"open":[150],"software":[152,167],"making":[154],"text":[157],"harmless":[158],"without":[159],"losing":[160],"its":[161],"meaning.":[163],"Development":[164],"dealt":[168],"issues":[173],"that":[174],"often":[175],"arise":[176],"natural":[178],"language":[179],"processing,":[180],"such":[181],"collection,":[184],"disambiguation,":[185],"scrubbing.":[188]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
