{"id":"https://openalex.org/W3088538535","doi":"https://doi.org/10.4018/jats.2010070102","title":"SPARK","display_name":"SPARK","publication_year":2010,"publication_date":"2010-07-01","ids":{"openalex":"https://openalex.org/W3088538535","doi":"https://doi.org/10.4018/jats.2010070102","mag":"3088538535","pmid":"https://pubmed.ncbi.nlm.nih.gov/24163721"},"language":"en","primary_location":{"id":"doi:10.4018/jats.2010070102","is_oa":false,"landing_page_url":"https://doi.org/10.4018/jats.2010070102","pdf_url":null,"source":{"id":"https://openalex.org/S162923185","display_name":"International Journal of Agent Technologies and Systems","issn_l":"1943-0744","issn":["1943-0744","1943-0752"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320424","host_organization_name":"IGI Global","host_organization_lineage":["https://openalex.org/P4310320424"],"host_organization_lineage_names":["IGI Global"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Agent Technologies and Systems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3806198","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049517241","display_name":"Alexey Solovyev","orcid":"https://orcid.org/0000-0001-8058-5317"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexey Solovyev","raw_affiliation_strings":["University of Pittsburgh, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Pittsburgh, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045213074","display_name":"Maxim Mikheev","orcid":"https://orcid.org/0000-0002-4426-875X"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maxim Mikheev","raw_affiliation_strings":["University of Pittsburgh, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Pittsburgh, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053701097","display_name":"Leming Zhou","orcid":"https://orcid.org/0000-0003-4398-0267"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Leming Zhou","raw_affiliation_strings":["University of Pittsburgh, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Pittsburgh, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018979051","display_name":"Joyeeta Dutta\u2010Moscato","orcid":null},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joyeeta Dutta-Moscato","raw_affiliation_strings":["University of Pittsburgh, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Pittsburgh, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030851778","display_name":"Cordelia Ziraldo","orcid":"https://orcid.org/0000-0001-8095-4506"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cordelia Ziraldo","raw_affiliation_strings":["University of Pittsburgh, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Pittsburgh, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042696510","display_name":"Gary An","orcid":"https://orcid.org/0000-0003-4549-9004"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gary An","raw_affiliation_strings":["University of Chicago and University of Pittsburgh, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Chicago and University of Pittsburgh, USA","institution_ids":["https://openalex.org/I40347166","https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073022985","display_name":"Yoram Vodovotz","orcid":"https://orcid.org/0000-0002-4389-8768"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yoram Vodovotz","raw_affiliation_strings":["University of Pittsburgh, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Pittsburgh, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076170464","display_name":"Qi Mi","orcid":"https://orcid.org/0000-0002-0197-8671"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qi Mi","raw_affiliation_strings":["University of Pittsburgh, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Pittsburgh, USA","institution_ids":["https://openalex.org/I170201317"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.953,"has_fulltext":false,"cited_by_count":28,"citation_normalized_percentile":{"value":0.75105815,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"2","issue":"3","first_page":"18","last_page":"30"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9818999767303467,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9818999767303467,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/spark","display_name":"SPARK (programming language)","score":0.8574526309967041},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7998040318489075},{"id":"https://openalex.org/keywords/netlogo","display_name":"NetLogo","score":0.6843538284301758},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.598061203956604},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5383862257003784},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.5226858854293823},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.4754374027252197},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.380182147026062},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.3778838515281677},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.35409578680992126},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.17412006855010986},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.08478653430938721}],"concepts":[{"id":"https://openalex.org/C2781215313","wikidata":"https://www.wikidata.org/wiki/Q3493345","display_name":"SPARK (programming language)","level":2,"score":0.8574526309967041},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7998040318489075},{"id":"https://openalex.org/C167221231","wikidata":"https://www.wikidata.org/wiki/Q672307","display_name":"NetLogo","level":2,"score":0.6843538284301758},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.598061203956604},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5383862257003784},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.5226858854293823},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.4754374027252197},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.380182147026062},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.3778838515281677},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.35409578680992126},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.17412006855010986},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.08478653430938721},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.4018/jats.2010070102","is_oa":false,"landing_page_url":"https://doi.org/10.4018/jats.2010070102","pdf_url":null,"source":{"id":"https://openalex.org/S162923185","display_name":"International Journal of Agent Technologies and Systems","issn_l":"1943-0744","issn":["1943-0744","1943-0752"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320424","host_organization_name":"IGI Global","host_organization_lineage":["https://openalex.org/P4310320424"],"host_organization_lineage_names":["IGI Global"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Agent Technologies and Systems","raw_type":"journal-article"},{"id":"pmid:24163721","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24163721","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International journal of agent technologies and systems","raw_type":null},{"id":"pmh:oai:RePEc:igg:jats00:v:2:y:2010:i:3:p:18-30","is_oa":false,"landing_page_url":"http://services.igi-global.com/resolvedoi/resolve.aspx?doi=10.4018/jats.2010070102","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2794714","is_oa":false,"landing_page_url":"http://europepmc.org/articles/PMC3806198","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3806198","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3806198","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Int J Agent Technol Syst","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:3806198","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3806198","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Int J Agent Technol Syst","raw_type":"Text"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.4699999988079071}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W126702416","https://openalex.org/W1495753479","https://openalex.org/W1977523316","https://openalex.org/W1988059443","https://openalex.org/W1992033406","https://openalex.org/W2000003193","https://openalex.org/W2006012747","https://openalex.org/W2084176648","https://openalex.org/W2092578710","https://openalex.org/W2121889251","https://openalex.org/W2150704630","https://openalex.org/W2151508309","https://openalex.org/W2159532448","https://openalex.org/W2171433196"],"related_works":["https://openalex.org/W3023917853","https://openalex.org/W4224013512","https://openalex.org/W4252443692","https://openalex.org/W2557308315","https://openalex.org/W27898408","https://openalex.org/W2040907244","https://openalex.org/W4253502255","https://openalex.org/W2291287845","https://openalex.org/W2077428003","https://openalex.org/W2022968056"],"abstract_inverted_index":{"Multi-scale":[0],"modeling":[1,24,47,79,117],"of":[2,17,28,43,58,73,141,167,179],"complex":[3],"biological":[4],"systems":[5,12,59],"remains":[6],"a":[7,75,89,97,101,160],"central":[8],"challenge":[9],"in":[10,93,156,176,184],"the":[11,26,41,56,64,112,138,189],"biology":[13],"community.":[14],"A":[15],"method":[16],"dynamic":[18],"knowledge":[19],"representation":[20],"known":[21],"as":[22,50],"agent-based":[23,46,78],"enables":[25],"study":[27],"higher":[29],"level":[30],"behavior":[31],"emerging":[32],"from":[33],"discrete":[34],"events":[35],"performed":[36],"by":[37],"individual":[38],"components.":[39],"With":[40],"advancement":[42],"computer":[44],"technology,":[45],"has":[48,111],"emerged":[49],"an":[51],"innovative":[52],"technique":[53],"to":[54,194],"model":[55,85],"complexities":[57],"biology.":[60],"In":[61],"this":[62],"work,":[63],"authors":[65],"describe":[66],"SPARK":[67,87,110],"(Simple":[68],"Platform":[69],"for":[70,77,82,105,116],"Agent-based":[71],"Representation":[72],"Knowledge),":[74],"framework":[76],"specifically":[80],"designed":[81],"systems-level":[83],"biomedical":[84,118,157],"development.":[86],"is":[88],"stand-alone":[90],"application":[91],"written":[92],"Java.":[94],"It":[95],"provides":[96],"user-friendly":[98],"interface,":[99],"and":[100,133,152,171,187],"simple":[102],"programming":[103],"language":[104],"developing":[106],"Agent-Based":[107],"Models":[108,178],"(ABMs).":[109],"following":[113],"features":[114],"specialized":[115],"systems:":[119],"1)":[120],"continuous":[121],"space":[122],"that":[123,135,148],"can":[124,136,149],"simulate":[125,151],"real":[126],"physical":[127],"space;":[128],"2)":[129],"flexible":[130],"agent":[131],"size":[132],"shape":[134],"represent":[137],"relative":[139],"proportions":[140],"various":[142],"cell":[143],"types;":[144],"3)":[145],"multiple":[146,154],"spaces":[147],"concurrently":[150],"visualize":[153],"scales":[155],"models;":[158],"4)":[159],"convenient":[161],"graphical":[162],"user":[163],"interface.":[164],"Existing":[165],"ABMs":[166],"diabetic":[168],"foot":[169],"ulcers":[170],"acute":[172],"inflammation":[173],"were":[174,182],"implemented":[175],"SPARK.":[177],"identical":[180],"complexity":[181],"run":[183],"both":[185],"NetLogo":[186],"SPARK;":[188],"SPARK-based":[190],"models":[191],"ran":[192],"two":[193],"three":[195],"times":[196],"faster.":[197]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2020-10-01T00:00:00"}
