{"id":"https://openalex.org/W3136094885","doi":"https://doi.org/10.4018/ijskd.2021010105","title":"Hybrid High-Performance Computing Algorithm for Gene Regulatory Network","display_name":"Hybrid High-Performance Computing Algorithm for Gene Regulatory Network","publication_year":2021,"publication_date":"2021-01-01","ids":{"openalex":"https://openalex.org/W3136094885","doi":"https://doi.org/10.4018/ijskd.2021010105","mag":"3136094885"},"language":"en","primary_location":{"id":"doi:10.4018/ijskd.2021010105","is_oa":false,"landing_page_url":"https://doi.org/10.4018/ijskd.2021010105","pdf_url":null,"source":{"id":"https://openalex.org/S177842713","display_name":"International Journal of Sociotechnology and Knowledge Development","issn_l":"1941-6253","issn":["1941-6253","1941-6261"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320424","host_organization_name":"IGI Global","host_organization_lineage":["https://openalex.org/P4310320424"],"host_organization_lineage_names":["IGI Global"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Sociotechnology and Knowledge Development","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056294832","display_name":"Dina Elsayad","orcid":"https://orcid.org/0000-0003-3934-7637"},"institutions":[{"id":"https://openalex.org/I107720978","display_name":"Ain Shams University","ror":"https://ror.org/00cb9w016","country_code":"EG","type":"education","lineage":["https://openalex.org/I107720978"]}],"countries":["EG"],"is_corresponding":true,"raw_author_name":"Dina Elsayad","raw_affiliation_strings":["Faculty of Computer and Information Sciences, Ain Shams University, Egypt"],"affiliations":[{"raw_affiliation_string":"Faculty of Computer and Information Sciences, Ain Shams University, Egypt","institution_ids":["https://openalex.org/I107720978"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043303783","display_name":"Safwat Hamad","orcid":"https://orcid.org/0000-0002-1338-8724"},"institutions":[{"id":"https://openalex.org/I107720978","display_name":"Ain Shams University","ror":"https://ror.org/00cb9w016","country_code":"EG","type":"education","lineage":["https://openalex.org/I107720978"]}],"countries":["EG"],"is_corresponding":false,"raw_author_name":"Safawat Hamad","raw_affiliation_strings":["Ain Shams University, Egypt"],"affiliations":[{"raw_affiliation_string":"Ain Shams University, Egypt","institution_ids":["https://openalex.org/I107720978"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103980859","display_name":"Howida Abd-Alfatah Shedeed","orcid":null},"institutions":[{"id":"https://openalex.org/I107720978","display_name":"Ain Shams University","ror":"https://ror.org/00cb9w016","country_code":"EG","type":"education","lineage":["https://openalex.org/I107720978"]}],"countries":["EG"],"is_corresponding":false,"raw_author_name":"Howida Abd-Alfatah Shedeed","raw_affiliation_strings":["Faculty of Computer and Information Sciences, Ain Shams University, Egypt"],"affiliations":[{"raw_affiliation_string":"Faculty of Computer and Information Sciences, Ain Shams University, Egypt","institution_ids":["https://openalex.org/I107720978"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011000412","display_name":"Mohamed F. Tolba","orcid":"https://orcid.org/0000-0003-3104-6418"},"institutions":[{"id":"https://openalex.org/I107720978","display_name":"Ain Shams University","ror":"https://ror.org/00cb9w016","country_code":"EG","type":"education","lineage":["https://openalex.org/I107720978"]}],"countries":["EG"],"is_corresponding":false,"raw_author_name":"Mohamed Fahmy Tolba","raw_affiliation_strings":["Faculty of Computer and Information Sciences, Ain Shams University, Egypt"],"affiliations":[{"raw_affiliation_string":"Faculty of Computer and Information Sciences, Ain Shams University, Egypt","institution_ids":["https://openalex.org/I107720978"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5056294832"],"corresponding_institution_ids":["https://openalex.org/I107720978"],"apc_list":null,"apc_paid":null,"fwci":0.1609,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.4712667,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"13","issue":"1","first_page":"52","last_page":"64"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.7893101572990417},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.767132043838501},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7296270132064819},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.650611162185669},{"id":"https://openalex.org/keywords/component","display_name":"Component (thermodynamics)","score":0.5172008275985718},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.47589242458343506},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4723464250564575},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.4239605665206909},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32880762219429016},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.324613094329834},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2981652021408081},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.2513383626937866},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2469630241394043},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1385239064693451},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.08124235272407532},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.0742962658405304}],"concepts":[{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.7893101572990417},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.767132043838501},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7296270132064819},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.650611162185669},{"id":"https://openalex.org/C168167062","wikidata":"https://www.wikidata.org/wiki/Q1117970","display_name":"Component (thermodynamics)","level":2,"score":0.5172008275985718},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.47589242458343506},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4723464250564575},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.4239605665206909},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32880762219429016},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.324613094329834},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2981652021408081},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.2513383626937866},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2469630241394043},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1385239064693451},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.08124235272407532},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0742962658405304},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.4018/ijskd.2021010105","is_oa":false,"landing_page_url":"https://doi.org/10.4018/ijskd.2021010105","pdf_url":null,"source":{"id":"https://openalex.org/S177842713","display_name":"International Journal of Sociotechnology and Knowledge Development","issn_l":"1941-6253","issn":["1941-6253","1941-6261"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320424","host_organization_name":"IGI Global","host_organization_lineage":["https://openalex.org/P4310320424"],"host_organization_lineage_names":["IGI Global"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Sociotechnology and Knowledge Development","raw_type":"journal-article"},{"id":"pmh:oai:RePEc:igg:jskd00:v:13:y:2021:i:1:p:52-64","is_oa":false,"landing_page_url":"https://services.igi-global.com/resolvedoi/resolve.aspx?doi=10.4018/IJSKD.2021010105","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":52,"referenced_works":["https://openalex.org/W1819972003","https://openalex.org/W1970156673","https://openalex.org/W1975430279","https://openalex.org/W1984852783","https://openalex.org/W1995949855","https://openalex.org/W1999303627","https://openalex.org/W2010888033","https://openalex.org/W2035812229","https://openalex.org/W2066672323","https://openalex.org/W2069645361","https://openalex.org/W2074157239","https://openalex.org/W2083850701","https://openalex.org/W2093680028","https://openalex.org/W2111501574","https://openalex.org/W2113387206","https://openalex.org/W2122708083","https://openalex.org/W2123649031","https://openalex.org/W2128017373","https://openalex.org/W2128962304","https://openalex.org/W2133068979","https://openalex.org/W2135064698","https://openalex.org/W2141146725","https://openalex.org/W2141224535","https://openalex.org/W2151038079","https://openalex.org/W2152068169","https://openalex.org/W2155120241","https://openalex.org/W2161868542","https://openalex.org/W2163480486","https://openalex.org/W2166058459","https://openalex.org/W2166760533","https://openalex.org/W2167114408","https://openalex.org/W2167190345","https://openalex.org/W2167980479","https://openalex.org/W2176987173","https://openalex.org/W2193102203","https://openalex.org/W2194684942","https://openalex.org/W2303875941","https://openalex.org/W2323257522","https://openalex.org/W2327519265","https://openalex.org/W2342019990","https://openalex.org/W2426902362","https://openalex.org/W2581899071","https://openalex.org/W2586478664","https://openalex.org/W2736215812","https://openalex.org/W2793447523","https://openalex.org/W2850647469","https://openalex.org/W2886541353","https://openalex.org/W2897069326","https://openalex.org/W2950199998","https://openalex.org/W2974802108","https://openalex.org/W2984507137","https://openalex.org/W2999315130"],"related_works":["https://openalex.org/W744764827","https://openalex.org/W2150101281","https://openalex.org/W2010976002","https://openalex.org/W2170847085","https://openalex.org/W3040412425","https://openalex.org/W1978979050","https://openalex.org/W2755467323","https://openalex.org/W2809693329","https://openalex.org/W2149021950","https://openalex.org/W3121311454"],"abstract_inverted_index":{"This":[0],"paper":[1],"presents":[2],"a":[3,23,100],"parallel":[4,88],"algorithm":[5,104,112],"for":[6,26,46,92,105,133],"gene":[7,19,47,93,106,129],"regulatory":[8,20,40,48,84,94,107],"network":[9,21,49,95,108],"construction,":[10],"hereby":[11],"referred":[12],"to":[13,81],"as":[14],"H2pcGRN.":[15],"The":[16,59,110,138],"construction":[17,50],"of":[18,43,62,128],"is":[22,52,78,90,99,113,131],"vital":[24],"methodology":[25],"investigating":[27],"the":[28,34,39,44,55,83,117,122],"genes":[29,35],"interactions'":[30],"topological":[31],"order,":[32],"annotating":[33],"functionality":[36],"and":[37,121,136],"demonstrating":[38],"process.":[41],"One":[42],"approaches":[45],"techniques":[51,89],"based":[53,114],"on":[54,115,153],"component":[56,63],"analysis":[57],"method.":[58],"main":[60],"drawbacks":[61],"analysis-based":[64],"algorithms":[65],"are":[66],"its":[67,148],"intensive":[68],"computations":[69],"that":[70,142],"consume":[71],"time.":[72],"Despite":[73],"these":[74],"drawbacks,":[75],"this":[76],"approach":[77],"widely":[79],"applied":[80],"infer":[82],"network.":[85],"Therefore,":[86],"introducing":[87],"indispensable":[91],"inference":[96],"algorithms.":[97],"H2pcGRN":[98,134,143],"hybrid":[101,118],"high":[102],"performance-computing":[103],"inference.":[109],"proposed":[111],"both":[116],"parallelism":[119],"architecture":[120],"generalized":[123],"cannon's":[124],"algorithm.":[125],"A":[126],"variety":[127],"datasets":[130],"used":[132],"assessment":[135],"evaluation.":[137],"experimental":[139],"results":[140],"indicated":[141],"achieved":[144],"super-linear":[145],"speedup,":[146],"where":[147],"computational":[149],"speedup":[150],"reached":[151],"570":[152],"256":[154],"processing":[155],"nodes.":[156]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
