{"id":"https://openalex.org/W1994387584","doi":"https://doi.org/10.4018/ijncr.2014010104","title":"Multi-Objective Evolutionary Algorithm NSGA-II for Protein Structure Prediction using Structural and Energetic Properties","display_name":"Multi-Objective Evolutionary Algorithm NSGA-II for Protein Structure Prediction using Structural and Energetic Properties","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W1994387584","doi":"https://doi.org/10.4018/ijncr.2014010104","mag":"1994387584"},"language":"en","primary_location":{"id":"doi:10.4018/ijncr.2014010104","is_oa":false,"landing_page_url":"https://doi.org/10.4018/ijncr.2014010104","pdf_url":null,"source":{"id":"https://openalex.org/S1001844925","display_name":"International Journal of Natural Computing Research","issn_l":"1947-928X","issn":["1947-928X","1947-9298"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320424","host_organization_name":"IGI Global","host_organization_lineage":["https://openalex.org/P4310320424"],"host_organization_lineage_names":["IGI Global"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Natural Computing Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111462290","display_name":"Rodrigo Antonio Faccioli","orcid":null},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]},{"id":"https://openalex.org/I4210131883","display_name":"Brazilian Society of Computational and Applied Mathematics","ror":"https://ror.org/03kcw4w74","country_code":"BR","type":"other","lineage":["https://openalex.org/I4210131883"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"R. A. Faccioli","raw_affiliation_strings":["Instituto de Ci\u00eancias Matem\u00e1ticas e de Computa\u00e7\u00e3o, Universidade de S\u00e3o Paulo, S\u00e3o Carlos, S\u00e3o Paulo, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de Ci\u00eancias Matem\u00e1ticas e de Computa\u00e7\u00e3o, Universidade de S\u00e3o Paulo, S\u00e3o Carlos, S\u00e3o Paulo, Brazil","institution_ids":["https://openalex.org/I4210131883","https://openalex.org/I17974374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054067127","display_name":"Leandro Oliveira Bortot","orcid":"https://orcid.org/0000-0002-0915-8205"},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"L. O. Bortot","raw_affiliation_strings":["Faculdade de Ci\u00eancias Farmac\u00eauticas de Ribeir\u00e3o Preto, Universidade de S\u00e3o Paulo, Ribeir\u00e3o Preto, S\u00e3o Paulo, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculdade de Ci\u00eancias Farmac\u00eauticas de Ribeir\u00e3o Preto, Universidade de S\u00e3o Paulo, Ribeir\u00e3o Preto, S\u00e3o Paulo, Brazil","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084551356","display_name":"Alexandre C. B. Delbem","orcid":"https://orcid.org/0000-0003-1810-1742"},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]},{"id":"https://openalex.org/I4210131883","display_name":"Brazilian Society of Computational and Applied Mathematics","ror":"https://ror.org/03kcw4w74","country_code":"BR","type":"other","lineage":["https://openalex.org/I4210131883"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"A. C. B. Delbem","raw_affiliation_strings":["Instituto de Ci\u00eancias Matem\u00e1ticas e de Computa\u00e7\u00e3o, Universidade de S\u00e3o Paulo, S\u00e3o Carlos, S\u00e3o Paulo, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de Ci\u00eancias Matem\u00e1ticas e de Computa\u00e7\u00e3o, Universidade de S\u00e3o Paulo, S\u00e3o Carlos, S\u00e3o Paulo, Brazil","institution_ids":["https://openalex.org/I4210131883","https://openalex.org/I17974374"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.2847,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.58783512,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"4","issue":"1","first_page":"43","last_page":"53"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10848","display_name":"Advanced Multi-Objective Optimization Algorithms","score":0.98580002784729,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7776334881782532},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.7030571103096008},{"id":"https://openalex.org/keywords/evolutionary-algorithm","display_name":"Evolutionary algorithm","score":0.5050929188728333},{"id":"https://openalex.org/keywords/measure","display_name":"Measure (data warehouse)","score":0.49300190806388855},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.44308286905288696},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.3879040777683258},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3251274824142456},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.31237268447875977},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2113436758518219},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.13626879453659058}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7776334881782532},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.7030571103096008},{"id":"https://openalex.org/C159149176","wikidata":"https://www.wikidata.org/wiki/Q14489129","display_name":"Evolutionary algorithm","level":2,"score":0.5050929188728333},{"id":"https://openalex.org/C2780009758","wikidata":"https://www.wikidata.org/wiki/Q6804172","display_name":"Measure (data warehouse)","level":2,"score":0.49300190806388855},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.44308286905288696},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.3879040777683258},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3251274824142456},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.31237268447875977},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2113436758518219},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.13626879453659058},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.4018/ijncr.2014010104","is_oa":false,"landing_page_url":"https://doi.org/10.4018/ijncr.2014010104","pdf_url":null,"source":{"id":"https://openalex.org/S1001844925","display_name":"International Journal of Natural Computing Research","issn_l":"1947-928X","issn":["1947-928X","1947-9298"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320424","host_organization_name":"IGI Global","host_organization_lineage":["https://openalex.org/P4310320424"],"host_organization_lineage_names":["IGI Global"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Natural Computing Research","raw_type":"journal-article"},{"id":"pmh:oai:RePEc:igg:jncr00:v:4:y:2014:i:1:p:43-53","is_oa":false,"landing_page_url":"http://services.igi-global.com/resolvedoi/resolve.aspx?doi=10.4018/ijncr.2014010104","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320997","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","ror":"https://ror.org/02ddkpn78"},{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320322835","display_name":"Ministry of Economic Affairs","ror":"https://ror.org/042ge0913"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W1493363674","https://openalex.org/W1595498733","https://openalex.org/W1607931568","https://openalex.org/W1968097838","https://openalex.org/W1975017420","https://openalex.org/W1982002436","https://openalex.org/W1985903340","https://openalex.org/W1991944734","https://openalex.org/W1992739911","https://openalex.org/W2003451283","https://openalex.org/W2027978582","https://openalex.org/W2030848865","https://openalex.org/W2031232041","https://openalex.org/W2036826180","https://openalex.org/W2042694939","https://openalex.org/W2049864329","https://openalex.org/W2052038479","https://openalex.org/W2065232574","https://openalex.org/W2084493621","https://openalex.org/W2085497102","https://openalex.org/W2089980489","https://openalex.org/W2103072162","https://openalex.org/W2104078482","https://openalex.org/W2126105956","https://openalex.org/W2128607364","https://openalex.org/W2128709101","https://openalex.org/W2129020329","https://openalex.org/W2134509774","https://openalex.org/W2140066605","https://openalex.org/W2141920771","https://openalex.org/W2142578757","https://openalex.org/W2154808242","https://openalex.org/W2163333444","https://openalex.org/W2164655924","https://openalex.org/W2318579846","https://openalex.org/W2484714924","https://openalex.org/W3023540311","https://openalex.org/W4211196614","https://openalex.org/W4246565613","https://openalex.org/W4255988860"],"related_works":["https://openalex.org/W2386767533","https://openalex.org/W2347219288","https://openalex.org/W2366221835","https://openalex.org/W2078187789","https://openalex.org/W2087132596","https://openalex.org/W1974941418","https://openalex.org/W1972198718","https://openalex.org/W1996683066","https://openalex.org/W2083339895","https://openalex.org/W2185499748"],"abstract_inverted_index":{"The":[0,80,116],"Protein":[1],"Structure":[2],"Prediction":[3],"(PSP)":[4],"problem":[5],"is":[6,27,85,97],"concerned":[7],"about":[8],"the":[9,12,68,98,110,124],"prediction":[10],"of":[11,16,70,78,82,112],"native":[13],"tertiary":[14],"structure":[15],"a":[17,28],"protein":[18],"in":[19,53,121],"respect":[20],"to":[21,50,55,108],"its":[22],"amino":[23],"acids":[24],"sequence.":[25],"PSP":[26],"challenging":[29],"and":[30,37,59,75,102],"computationally":[31],"open":[32],"problem.":[33],"Therefore,":[34],"several":[35],"researches":[36],"methodologies":[38],"have":[39],"been":[40],"developed":[41],"for":[42,93],"it.":[43],"In":[44],"this":[45,83],"way,":[46],"developers":[47],"are":[48],"working":[49],"integrate":[51],"frameworks":[52],"order":[54],"improve":[56],"their":[57,61],"capabilities":[58],"make":[60],"use":[62],"more":[63],"straightforward.":[64],"This":[65,95],"paper":[66],"presents":[67],"application":[69],"NSGA-II":[71],"algorithm":[72,84],"using":[73],"structural":[74],"energetic":[76],"properties":[77],"protein.":[79],"implementation":[81],"based":[86],"on":[87],"ProtPred-GROMACS":[88],"(2PG),":[89],"an":[90],"evolutionary":[91],"framework":[92,96],"PSP.":[94],"integration":[99],"between":[100],"ProtPred":[101],"GROMACS.":[103],"Six":[104],"proteins":[105],"were":[106,118],"used":[107],"measure":[109],"capacity":[111],"ab":[113],"initio":[114],"predictions.":[115],"results":[117],"interesting":[119],"since":[120],"all":[122],"cases":[123],"native-like":[125],"topology":[126],"was":[127],"obtained.":[128]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}