{"id":"https://openalex.org/W2025155287","doi":"https://doi.org/10.4018/ijkdb.2014010101","title":"Towards a Mixed Approach to Extract Biomedical Terms from Text Corpus","display_name":"Towards a Mixed Approach to Extract Biomedical Terms from Text Corpus","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W2025155287","doi":"https://doi.org/10.4018/ijkdb.2014010101","mag":"2025155287"},"language":"en","primary_location":{"id":"doi:10.4018/ijkdb.2014010101","is_oa":false,"landing_page_url":"https://doi.org/10.4018/ijkdb.2014010101","pdf_url":null,"source":{"id":"https://openalex.org/S113982356","display_name":"International Journal of Knowledge Discovery in Bioinformatics","issn_l":"1947-9115","issn":["1947-9115","1947-9123"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320424","host_organization_name":"IGI Global","host_organization_lineage":["https://openalex.org/P4310320424"],"host_organization_lineage_names":["IGI Global"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Knowledge Discovery in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://hal-lirmm.ccsd.cnrs.fr/lirmm-00859846","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079554685","display_name":"Juan Antonio Lossio-Ventura","orcid":"https://orcid.org/0000-0003-0996-2356"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4405261681"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Juan Antonio Lossio Ventura","raw_affiliation_strings":["LIRMM, University Montpellier 2, Montpellier, France & CNRS, Paris, France","LIRMM, University Montpellier 2, Montpellier, France & CNRS, Paris, France#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LIRMM, University Montpellier 2, Montpellier, France & CNRS, Paris, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210101743"]},{"raw_affiliation_string":"LIRMM, University Montpellier 2, Montpellier, France & CNRS, Paris, France#TAB#","institution_ids":["https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064022148","display_name":"Cl\u00e9ment Jonquet","orcid":"https://orcid.org/0000-0002-2404-1582"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4405261681"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Clement Jonquet","raw_affiliation_strings":["LIRMM, University Montpellier 2, Montpellier, France & CNRS, Paris, France","LIRMM, University Montpellier 2, Montpellier, France & CNRS, Paris, France#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LIRMM, University Montpellier 2, Montpellier, France & CNRS, Paris, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210101743"]},{"raw_affiliation_string":"LIRMM, University Montpellier 2, Montpellier, France & CNRS, Paris, France#TAB#","institution_ids":["https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014118555","display_name":"Mathieu Roche","orcid":"https://orcid.org/0000-0003-3272-8568"},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I22248866","display_name":"AgroParisTech","ror":"https://ror.org/02kbmgc12","country_code":"FR","type":"education","lineage":["https://openalex.org/I22248866","https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4387153996","display_name":"Territoires, Environnement, T\u00e9l\u00e9d\u00e9tection et Information Spatiale","ror":"https://ror.org/0458hw939","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I131077856","https://openalex.org/I22248866","https://openalex.org/I277688954","https://openalex.org/I4210088668","https://openalex.org/I4387153996"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Mathieu Roche","raw_affiliation_strings":["UMR TETIS, Cirad, Irstea, AgroParisTech, Montpellier, France","UMR TETIS, Cirad, Irstea, AgroParisTech, Montpellier, France#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UMR TETIS, Cirad, Irstea, AgroParisTech, Montpellier, France","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I22248866"]},{"raw_affiliation_string":"UMR TETIS, Cirad, Irstea, AgroParisTech, Montpellier, France#TAB#","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I22248866","https://openalex.org/I4387153996"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075318719","display_name":"Maguelonne Teisseire","orcid":"https://orcid.org/0000-0001-9313-6414"},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I22248866","display_name":"AgroParisTech","ror":"https://ror.org/02kbmgc12","country_code":"FR","type":"education","lineage":["https://openalex.org/I22248866","https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4387153996","display_name":"Territoires, Environnement, T\u00e9l\u00e9d\u00e9tection et Information Spatiale","ror":"https://ror.org/0458hw939","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I131077856","https://openalex.org/I22248866","https://openalex.org/I277688954","https://openalex.org/I4210088668","https://openalex.org/I4387153996"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Maguelonne Teisseire","raw_affiliation_strings":["UMR TETIS, Cirad, Irstea, AgroParisTech, Montpellier, France","UMR TETIS, Cirad, Irstea, AgroParisTech, Montpellier, France#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UMR TETIS, Cirad, Irstea, AgroParisTech, Montpellier, France","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I22248866"]},{"raw_affiliation_string":"UMR TETIS, Cirad, Irstea, AgroParisTech, Montpellier, France#TAB#","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I22248866","https://openalex.org/I4387153996"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.6897,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.83519966,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"4","issue":"1","first_page":"1","last_page":"15"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9854999780654907,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tf\u2013idf","display_name":"tf\u2013idf","score":0.854019284248352},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.780287504196167},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.6525658369064331},{"id":"https://openalex.org/keywords/statistic","display_name":"Statistic","score":0.6114392876625061},{"id":"https://openalex.org/keywords/rank","display_name":"Rank (graph theory)","score":0.5834254026412964},{"id":"https://openalex.org/keywords/term","display_name":"Term (time)","score":0.5677824020385742},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5299521684646606},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.46339184045791626},{"id":"https://openalex.org/keywords/keyword-extraction","display_name":"Keyword extraction","score":0.44566431641578674},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.41223180294036865},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.40088701248168945},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.15862873196601868},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1266174614429474}],"concepts":[{"id":"https://openalex.org/C81758059","wikidata":"https://www.wikidata.org/wiki/Q796584","display_name":"tf\u2013idf","level":3,"score":0.854019284248352},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.780287504196167},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6525658369064331},{"id":"https://openalex.org/C89128539","wikidata":"https://www.wikidata.org/wiki/Q1949963","display_name":"Statistic","level":2,"score":0.6114392876625061},{"id":"https://openalex.org/C164226766","wikidata":"https://www.wikidata.org/wiki/Q7293202","display_name":"Rank (graph theory)","level":2,"score":0.5834254026412964},{"id":"https://openalex.org/C61797465","wikidata":"https://www.wikidata.org/wiki/Q1188986","display_name":"Term (time)","level":2,"score":0.5677824020385742},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5299521684646606},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.46339184045791626},{"id":"https://openalex.org/C2780288562","wikidata":"https://www.wikidata.org/wiki/Q25053353","display_name":"Keyword extraction","level":2,"score":0.44566431641578674},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.41223180294036865},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.40088701248168945},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.15862873196601868},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1266174614429474},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.4018/ijkdb.2014010101","is_oa":false,"landing_page_url":"https://doi.org/10.4018/ijkdb.2014010101","pdf_url":null,"source":{"id":"https://openalex.org/S113982356","display_name":"International Journal of Knowledge Discovery in Bioinformatics","issn_l":"1947-9115","issn":["1947-9115","1947-9123"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320424","host_organization_name":"IGI Global","host_organization_lineage":["https://openalex.org/P4310320424"],"host_organization_lineage_names":["IGI Global"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Knowledge Discovery in Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:HAL:lirmm-00859846v2","is_oa":true,"landing_page_url":"https://hal-lirmm.ccsd.cnrs.fr/lirmm-00859846","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.igi-global.com/journal/international-journal-knowledge-discovery-bioinformatics/1143","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:RePEc:igg:jkdb00:v:4:y:2014:i:1:p:1-15","is_oa":false,"landing_page_url":"http://services.igi-global.com/resolvedoi/resolve.aspx?doi=10.4018/ijkdb.2014010101","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:agritrop.cirad.fr:573218","is_oa":false,"landing_page_url":"http://agritrop.cirad.fr/573218/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402311","display_name":"Agritrop (Cirad)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I131077856","host_organization_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","host_organization_lineage":["https://openalex.org/I131077856"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"International Journal of Knowledge Discovery in Bioinformatics","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:HAL:lirmm-00859846v2","is_oa":true,"landing_page_url":"https://hal-lirmm.ccsd.cnrs.fr/lirmm-00859846","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.igi-global.com/journal/international-journal-knowledge-discovery-bioinformatics/1143","raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.7699999809265137}],"awards":[{"id":"https://openalex.org/G3163276471","display_name":"Semantic Indexing of French Biomedical Data Resources","funder_award_id":"ANR-12-JS02-0010","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W48780670","https://openalex.org/W95284390","https://openalex.org/W176293101","https://openalex.org/W1529346362","https://openalex.org/W1533359486","https://openalex.org/W1538480911","https://openalex.org/W1546842539","https://openalex.org/W1593195594","https://openalex.org/W1901747553","https://openalex.org/W1982672824","https://openalex.org/W2030903088","https://openalex.org/W2039612385","https://openalex.org/W2049107599","https://openalex.org/W2061644206","https://openalex.org/W2075310148","https://openalex.org/W2078307131","https://openalex.org/W2087696423","https://openalex.org/W2100080715","https://openalex.org/W2126032162","https://openalex.org/W2131660156","https://openalex.org/W2165897980","https://openalex.org/W2245896265","https://openalex.org/W2614991209"],"related_works":["https://openalex.org/W2547674841","https://openalex.org/W1997256148","https://openalex.org/W3186733304","https://openalex.org/W2069275471","https://openalex.org/W2343335642","https://openalex.org/W2251767200","https://openalex.org/W2384924398","https://openalex.org/W3083038004","https://openalex.org/W2997891576","https://openalex.org/W2375710893"],"abstract_inverted_index":{"The":[0,20,122],"objective":[1],"of":[2,87,108,117],"this":[3],"paper":[4],"is":[5],"to":[6,10,60,76,90],"present":[7,22],"a":[8,115],"methodology":[9],"extract":[11],"and":[12,43,52,65,100,110,131],"rank":[13],"automatically":[14],"biomedical":[15,34,112],"terms":[16,113],"from":[17,114],"free":[18],"text.":[19],"authors":[21,67],"new":[23],"extraction":[24,38,46,63,92,107],"methods":[25],"taking":[26],"into":[27],"account":[28],"linguistic":[29],"patterns":[30],"specialized":[31],"for":[32,98],"the":[33,62,66,72,106],"domain,":[35],"statistic":[36,44],"term":[37,102],"measures":[39,47,55,93],"such":[40,48],"as":[41,49,136],"C-value":[42,88],"keyword":[45,91],"Okapi":[50],"BM25,":[51],"TFIDF.":[53],"These":[54],"are":[56,71,124],"combined":[57],"in":[58],"order":[59],"improve":[61],"process":[64],"investigate":[68],"which":[69],"combinations":[70],"more":[73],"relevant":[74],"associated":[75,89],"different":[77],"contexts.":[78],"Experimental":[79],"results":[80,123],"show":[81],"that":[82],"an":[83],"appropriate":[84],"harmonic":[85],"mean":[86],"offers":[94],"better":[95],"precision,":[96],"both":[97],"single-word":[99],"multi-words":[101],"extraction.":[103],"Experiments":[104],"describe":[105],"English":[109],"French":[111],"corpus":[116],"laboratory":[118],"tests":[119],"available":[120],"online.":[121],"validated":[125],"by":[126],"using":[127],"UMLS":[128],"(in":[129,134],"English)":[130],"only":[132],"MeSH":[133],"French)":[135],"reference":[137],"dictionary.":[138]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":4}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
