{"id":"https://openalex.org/W4407238729","doi":"https://doi.org/10.34133/icomputing.0112","title":"From the Test Tube to the Cell: A Homecoming for DNA Computing Circuits?","display_name":"From the Test Tube to the Cell: A Homecoming for DNA Computing Circuits?","publication_year":2025,"publication_date":"2025-01-01","ids":{"openalex":"https://openalex.org/W4407238729","doi":"https://doi.org/10.34133/icomputing.0112"},"language":"en","primary_location":{"id":"doi:10.34133/icomputing.0112","is_oa":true,"landing_page_url":"https://doi.org/10.34133/icomputing.0112","pdf_url":null,"source":{"id":"https://openalex.org/S4387281904","display_name":"Intelligent Computing","issn_l":"2771-5892","issn":["2771-5892"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Intelligent Computing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://doi.org/10.34133/icomputing.0112","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100863374","display_name":"Hye-Yun Jung","orcid":"https://orcid.org/0000-0002-4770-1782"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Hyeyun Jung","raw_affiliation_strings":["Interdisciplinary Computing and Complex Biosystems Research Group, School of Computing, \rNewcastle University, Newcastle upon Tyne, UK","ICOS Interdisciplinary Computing and Complex Biosystems Research Group,School of Computing Science,Newcastle University, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Interdisciplinary Computing and Complex Biosystems Research Group, School of Computing, \rNewcastle University, Newcastle upon Tyne, UK","institution_ids":["https://openalex.org/I84884186"]},{"raw_affiliation_string":"ICOS Interdisciplinary Computing and Complex Biosystems Research Group,School of Computing Science,Newcastle University, UK","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092111617","display_name":"Ethan Collinson","orcid":null},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ethan Collinson","raw_affiliation_strings":["Interdisciplinary Computing and Complex Biosystems Research Group, School of Computing, \rNewcastle University, Newcastle upon Tyne, UK","ICOS Interdisciplinary Computing and Complex Biosystems Research Group,School of Computing Science,Newcastle University, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Interdisciplinary Computing and Complex Biosystems Research Group, School of Computing, \rNewcastle University, Newcastle upon Tyne, UK","institution_ids":["https://openalex.org/I84884186"]},{"raw_affiliation_string":"ICOS Interdisciplinary Computing and Complex Biosystems Research Group,School of Computing Science,Newcastle University, UK","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5116185577","display_name":"Alexander Patrick Hawes","orcid":null},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alexander Patrick Hawes","raw_affiliation_strings":["Interdisciplinary Computing and Complex Biosystems Research Group, School of Computing, \rNewcastle University, Newcastle upon Tyne, UK","ICOS Interdisciplinary Computing and Complex Biosystems Research Group, School of Computing Science, Newcastle University, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Interdisciplinary Computing and Complex Biosystems Research Group, School of Computing, \rNewcastle University, Newcastle upon Tyne, UK","institution_ids":["https://openalex.org/I84884186"]},{"raw_affiliation_string":"ICOS Interdisciplinary Computing and Complex Biosystems Research Group, School of Computing Science, Newcastle University, UK","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055847229","display_name":"Harold Fellermann","orcid":"https://orcid.org/0000-0001-5861-1945"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Harold Fellermann","raw_affiliation_strings":["Interdisciplinary Computing and Complex Biosystems Research Group, School of Computing, \rNewcastle University, Newcastle upon Tyne, UK","Newcastle University, School of Computing, Newcastle Upon Tyne, Select Region, NE1 7RU, UNITED KINGDOM"],"raw_orcid":"https://orcid.org/0000-0001-5861-1945","affiliations":[{"raw_affiliation_string":"Interdisciplinary Computing and Complex Biosystems Research Group, School of Computing, \rNewcastle University, Newcastle upon Tyne, UK","institution_ids":["https://openalex.org/I84884186"]},{"raw_affiliation_string":"Newcastle University, School of Computing, Newcastle Upon Tyne, Select Region, NE1 7RU, UNITED KINGDOM","institution_ids":["https://openalex.org/I84884186"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5055847229"],"corresponding_institution_ids":["https://openalex.org/I84884186"],"apc_list":null,"apc_paid":null,"fwci":0.9736,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.71956102,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":"4","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12784","display_name":"Modular Robots and Swarm Intelligence","score":0.9745000004768372,"subfield":{"id":"https://openalex.org/subfields/2210","display_name":"Mechanical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/homecoming","display_name":"Homecoming","score":0.9129762649536133},{"id":"https://openalex.org/keywords/test","display_name":"Test (biology)","score":0.5654028058052063},{"id":"https://openalex.org/keywords/dna-computing","display_name":"DNA computing","score":0.4798721373081207},{"id":"https://openalex.org/keywords/tube","display_name":"Tube (container)","score":0.45666083693504333},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.41433385014533997},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.2684394121170044},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.2368316948413849},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18404662609100342},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17759892344474792},{"id":"https://openalex.org/keywords/art","display_name":"Art","score":0.09647932648658752},{"id":"https://openalex.org/keywords/composite-material","display_name":"Composite material","score":0.07543396949768066}],"concepts":[{"id":"https://openalex.org/C2778473246","wikidata":"https://www.wikidata.org/wiki/Q750053","display_name":"Homecoming","level":2,"score":0.9129762649536133},{"id":"https://openalex.org/C2777267654","wikidata":"https://www.wikidata.org/wiki/Q3519023","display_name":"Test (biology)","level":2,"score":0.5654028058052063},{"id":"https://openalex.org/C82047324","wikidata":"https://www.wikidata.org/wiki/Q177126","display_name":"DNA computing","level":3,"score":0.4798721373081207},{"id":"https://openalex.org/C2777551473","wikidata":"https://www.wikidata.org/wiki/Q2093072","display_name":"Tube (container)","level":2,"score":0.45666083693504333},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.41433385014533997},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.2684394121170044},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.2368316948413849},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18404662609100342},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17759892344474792},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.09647932648658752},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.07543396949768066},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.34133/icomputing.0112","is_oa":true,"landing_page_url":"https://doi.org/10.34133/icomputing.0112","pdf_url":null,"source":{"id":"https://openalex.org/S4387281904","display_name":"Intelligent Computing","issn_l":"2771-5892","issn":["2771-5892"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Intelligent Computing","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:eeae9efc726d4b83bbe4f661492021a1","is_oa":true,"landing_page_url":"https://doaj.org/article/eeae9efc726d4b83bbe4f661492021a1","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Intelligent Computing, Vol 4 (2025)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.34133/icomputing.0112","is_oa":true,"landing_page_url":"https://doi.org/10.34133/icomputing.0112","pdf_url":null,"source":{"id":"https://openalex.org/S4387281904","display_name":"Intelligent Computing","issn_l":"2771-5892","issn":["2771-5892"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Intelligent Computing","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":188,"referenced_works":["https://openalex.org/W64403321","https://openalex.org/W201532216","https://openalex.org/W1517692491","https://openalex.org/W1617520624","https://openalex.org/W1645305843","https://openalex.org/W1842664382","https://openalex.org/W1861739715","https://openalex.org/W1964928696","https://openalex.org/W1967851018","https://openalex.org/W1968343208","https://openalex.org/W1971033056","https://openalex.org/W1975279219","https://openalex.org/W1977312644","https://openalex.org/W1980301976","https://openalex.org/W1985357096","https://openalex.org/W1986292487","https://openalex.org/W1988812533","https://openalex.org/W1989050496","https://openalex.org/W1994028898","https://openalex.org/W2000804241","https://openalex.org/W2003847712","https://openalex.org/W2005188216","https://openalex.org/W2006233084","https://openalex.org/W2013259685","https://openalex.org/W2013563297","https://openalex.org/W2019682748","https://openalex.org/W2022012719","https://openalex.org/W2022156928","https://openalex.org/W2022374572","https://openalex.org/W2022450600","https://openalex.org/W2023196043","https://openalex.org/W2027603534","https://openalex.org/W2030699288","https://openalex.org/W2032407757","https://openalex.org/W2033582411","https://openalex.org/W2037209299","https://openalex.org/W2038125628","https://openalex.org/W2040870580","https://openalex.org/W2041857964","https://openalex.org/W2042877357","https://openalex.org/W2045295945","https://openalex.org/W2047206115","https://openalex.org/W2047231556","https://openalex.org/W2048793492","https://openalex.org/W2051777566","https://openalex.org/W2056789539","https://openalex.org/W2068068897","https://openalex.org/W2068836528","https://openalex.org/W2070389092","https://openalex.org/W2071242556","https://openalex.org/W2072347561","https://openalex.org/W2075031385","https://openalex.org/W2078861258","https://openalex.org/W2079505277","https://openalex.org/W2083735301","https://openalex.org/W2084599155","https://openalex.org/W2090655923","https://openalex.org/W2094844506","https://openalex.org/W2098508116","https://openalex.org/W2098579316","https://openalex.org/W2101206446","https://openalex.org/W2103409481","https://openalex.org/W2104146049","https://openalex.org/W2104525153","https://openalex.org/W2105213087","https://openalex.org/W2105259569","https://openalex.org/W2108828818","https://openalex.org/W2113567410","https://openalex.org/W2116082125","https://openalex.org/W2120831623","https://openalex.org/W2123227899","https://openalex.org/W2126160338","https://openalex.org/W2126961173","https://openalex.org/W2128873863","https://openalex.org/W2133873308","https://openalex.org/W2134759932","https://openalex.org/W2148304424","https://openalex.org/W2149158279","https://openalex.org/W2151366879","https://openalex.org/W2155752821","https://openalex.org/W2159595055","https://openalex.org/W2164215798","https://openalex.org/W2167949866","https://openalex.org/W2171439027","https://openalex.org/W2240026569","https://openalex.org/W2272742955","https://openalex.org/W2282126234","https://openalex.org/W2295288655","https://openalex.org/W2312836697","https://openalex.org/W2317036417","https://openalex.org/W2317687374","https://openalex.org/W2323777246","https://openalex.org/W2406068533","https://openalex.org/W2474099094","https://openalex.org/W2504860691","https://openalex.org/W2514433810","https://openalex.org/W2538438209","https://openalex.org/W2581073170","https://openalex.org/W2584393703","https://openalex.org/W2588186673","https://openalex.org/W2590422751","https://openalex.org/W2592731699","https://openalex.org/W2592829457","https://openalex.org/W2605776352","https://openalex.org/W2607586414","https://openalex.org/W2609600110","https://openalex.org/W2609877996","https://openalex.org/W2616879241","https://openalex.org/W2618598628","https://openalex.org/W2623831325","https://openalex.org/W2729863764","https://openalex.org/W2738534387","https://openalex.org/W2739451081","https://openalex.org/W2743947100","https://openalex.org/W2747854069","https://openalex.org/W2763748031","https://openalex.org/W2769882312","https://openalex.org/W2780750565","https://openalex.org/W2790914347","https://openalex.org/W2801147369","https://openalex.org/W2806273582","https://openalex.org/W2807947319","https://openalex.org/W2810268565","https://openalex.org/W2895667869","https://openalex.org/W2899004850","https://openalex.org/W2901033907","https://openalex.org/W2901060305","https://openalex.org/W2901913077","https://openalex.org/W2905223430","https://openalex.org/W2906835603","https://openalex.org/W2914626251","https://openalex.org/W2915027573","https://openalex.org/W2949193645","https://openalex.org/W2952620388","https://openalex.org/W2962738471","https://openalex.org/W2963139878","https://openalex.org/W2965552673","https://openalex.org/W2965802731","https://openalex.org/W2969711463","https://openalex.org/W2969844342","https://openalex.org/W2973352099","https://openalex.org/W2982168093","https://openalex.org/W2986783546","https://openalex.org/W2989682596","https://openalex.org/W2996946223","https://openalex.org/W2999854400","https://openalex.org/W3004719387","https://openalex.org/W3012082713","https://openalex.org/W3027680984","https://openalex.org/W3038527317","https://openalex.org/W3081775775","https://openalex.org/W3085673691","https://openalex.org/W3092267460","https://openalex.org/W3108736071","https://openalex.org/W3117534107","https://openalex.org/W3154154403","https://openalex.org/W3165500258","https://openalex.org/W3166533568","https://openalex.org/W3173195542","https://openalex.org/W3187425214","https://openalex.org/W3202347243","https://openalex.org/W3202678087","https://openalex.org/W3203592626","https://openalex.org/W4200516628","https://openalex.org/W4206527583","https://openalex.org/W4210330458","https://openalex.org/W4211008702","https://openalex.org/W4220659535","https://openalex.org/W4225928707","https://openalex.org/W4280574988","https://openalex.org/W4281290505","https://openalex.org/W4283773174","https://openalex.org/W4283778205","https://openalex.org/W4283793854","https://openalex.org/W4285043723","https://openalex.org/W4306168004","https://openalex.org/W4309349821","https://openalex.org/W4311921937","https://openalex.org/W4313487455","https://openalex.org/W4323347452","https://openalex.org/W4366990473","https://openalex.org/W4367836509","https://openalex.org/W4376115919","https://openalex.org/W4379792915","https://openalex.org/W4383033608","https://openalex.org/W4385385949","https://openalex.org/W4386611234","https://openalex.org/W4388946036"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W338377227","https://openalex.org/W4234124655","https://openalex.org/W2027237145","https://openalex.org/W2371220934","https://openalex.org/W1545425551","https://openalex.org/W2182098863","https://openalex.org/W4248904739"],"abstract_inverted_index":{"This":[0,82],"review":[1,188],"article":[2],"poses":[3],"the":[4,38,42,55,70,105,164,174,187,196,223],"overarching":[5],"question:":[6],"Can":[7],"complex":[8,209],"dynamic":[9],"DNA":[10,31,64,80,102,118,131,155,181,201],"nanodevices":[11,103,132],"based":[12],"on":[13,145,218],"strand":[14,49,65,119,156],"displacement":[15,50,66,120,157],"reactions":[16],"be":[17,151],"operated":[18],"within,":[19],"and":[20,33,44,60,91,113,159,167,183,192],"can":[21,100,150],"they":[22],"interoperate":[23],"with":[24,142,228],"living":[25,171],"cells?":[26],"Reviewing":[27],"recent":[28,114],"literature":[29],"from":[30],"nanotechnology":[32,182],"molecular":[34,146,184],"computing,":[35],"we":[36,136],"explore":[37],"background,":[39],"state":[40],"of":[41,63,107,116,140,170,176,198,225],"art,":[43],"current":[45,61],"challenges":[46,112,191],"toward":[47,195],"intracellular":[48,200],"reactions.":[51],"We":[52,68,110],"first":[53],"introduce":[54],"underlying":[56],"principles,":[57],"seminal":[58],"achievements,":[59],"limitations":[62],"circuits.":[67],"discuss":[69,137],"potential":[71],"for":[72],"biological":[73,97,206,220],"molecules":[74,98],"to":[75,79,162,204,222],"serve":[76],"as":[77,88,93,95,125,127],"inputs":[78],"nanocircuits.":[81],"comprises":[83],"cellular":[84,123],"nucleic":[85],"acids":[86],"such":[87],"messenger":[89],"RNA":[90],"microRNA,":[92],"well":[94,126],"other":[96],"that":[99],"trigger":[101],"through":[104],"aid":[106],"aptamer":[108],"binding.":[109],"investigate":[111],"successes":[115],"operating":[117],"devices":[121],"in":[122,180,215],"lysates":[124],"delivering":[128],"or":[129],"integrating":[130],"into":[133],"cells.":[134],"Finally,":[135],"biocompatible":[138],"models":[139],"computation,":[141],"particular":[143],"emphasis":[144],"neural":[147],"networks,":[148],"which":[149],"seamlessly":[152],"mapped":[153],"onto":[154],"networks":[158],"offer":[160],"promise":[161],"mimic":[163],"self-organizing,":[165],"adaptive,":[166],"fault-tolerant":[168],"nature":[169],"organisms.":[172],"Taking":[173],"efforts":[175],"numerous":[177],"research":[178],"groups":[179],"computing":[185],"together,":[186],"identifies":[189],"remaining":[190],"future":[193],"directions":[194],"creation":[197],"programmable":[199],"nanomachines":[202],"able":[203],"interrogate":[205],"signals,":[207],"perform":[208],"computation":[210],"over":[211],"acquired":[212],"information,":[213],"and,":[214],"response,":[216],"actuate":[217],"their":[219],"environment\u2014similar":[221],"interactions":[224],"a":[226],"robot":[227],"its":[229],"environment.":[230]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
