{"id":"https://openalex.org/W4318777814","doi":"https://doi.org/10.3390/informatics10010018","title":"Discovering Entities Similarities in Biological Networks Using a Hybrid Immune Algorithm","display_name":"Discovering Entities Similarities in Biological Networks Using a Hybrid Immune Algorithm","publication_year":2023,"publication_date":"2023-01-31","ids":{"openalex":"https://openalex.org/W4318777814","doi":"https://doi.org/10.3390/informatics10010018"},"language":"en","primary_location":{"id":"doi:10.3390/informatics10010018","is_oa":true,"landing_page_url":"https://doi.org/10.3390/informatics10010018","pdf_url":"https://www.mdpi.com/2227-9709/10/1/18/pdf?version=1675315652","source":{"id":"https://openalex.org/S2738238905","display_name":"Informatics","issn_l":"2227-9709","issn":["2227-9709"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/2227-9709/10/1/18/pdf?version=1675315652","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002370233","display_name":"Rocco A. Scollo","orcid":"https://orcid.org/0000-0002-6211-8675"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Rocco A. Scollo","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Catania, Viale Andrea Doria 6, 95125 Catania, Italy"],"raw_orcid":"https://orcid.org/0000-0002-6211-8675","affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Catania, Viale Andrea Doria 6, 95125 Catania, Italy","institution_ids":["https://openalex.org/I39063666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012561437","display_name":"Antonio Gianmaria Spampinato","orcid":"https://orcid.org/0000-0001-9194-5509"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Antonio G. Spampinato","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Catania, Viale Andrea Doria 6, 95125 Catania, Italy"],"raw_orcid":"https://orcid.org/0000-0001-9194-5509","affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Catania, Viale Andrea Doria 6, 95125 Catania, Italy","institution_ids":["https://openalex.org/I39063666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063998712","display_name":"Georgia Fargetta","orcid":"https://orcid.org/0000-0002-6444-1564"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Georgia Fargetta","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Catania, Viale Andrea Doria 6, 95125 Catania, Italy"],"raw_orcid":"https://orcid.org/0000-0002-6444-1564","affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Catania, Viale Andrea Doria 6, 95125 Catania, Italy","institution_ids":["https://openalex.org/I39063666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001469539","display_name":"Vincenzo Cutello","orcid":"https://orcid.org/0000-0002-7521-3516"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Vincenzo Cutello","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Catania, Viale Andrea Doria 6, 95125 Catania, Italy"],"raw_orcid":"https://orcid.org/0000-0002-7521-3516","affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Catania, Viale Andrea Doria 6, 95125 Catania, Italy","institution_ids":["https://openalex.org/I39063666"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059851427","display_name":"Mario Pavone","orcid":"https://orcid.org/0000-0003-3421-3293"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Mario Pavone","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Catania, Viale Andrea Doria 6, 95125 Catania, Italy"],"raw_orcid":"https://orcid.org/0000-0003-3421-3293","affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Catania, Viale Andrea Doria 6, 95125 Catania, Italy","institution_ids":["https://openalex.org/I39063666"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5059851427"],"corresponding_institution_ids":["https://openalex.org/I39063666"],"apc_list":{"value":1600,"currency":"CHF","value_usd":1732},"apc_paid":{"value":1600,"currency":"CHF","value_usd":1732},"fwci":0.2999,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.61664136,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"10","issue":"1","first_page":"18","last_page":"18"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9851999878883362,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/modularity","display_name":"Modularity (biology)","score":0.7824982404708862},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.6442484855651855},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6402897238731384},{"id":"https://openalex.org/keywords/heuristics","display_name":"Heuristics","score":0.6284556984901428},{"id":"https://openalex.org/keywords/metaheuristic","display_name":"Metaheuristic","score":0.6052632331848145},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5526203513145447},{"id":"https://openalex.org/keywords/complex-network","display_name":"Complex network","score":0.5085622072219849},{"id":"https://openalex.org/keywords/greedy-algorithm","display_name":"Greedy algorithm","score":0.41461390256881714},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.41404253244400024},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36783695220947266},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.344595730304718},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3339088559150696},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.29031550884246826},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.23958364129066467},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19159504771232605},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1731085181236267}],"concepts":[{"id":"https://openalex.org/C2779478453","wikidata":"https://www.wikidata.org/wiki/Q6889748","display_name":"Modularity (biology)","level":2,"score":0.7824982404708862},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.6442484855651855},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6402897238731384},{"id":"https://openalex.org/C127705205","wikidata":"https://www.wikidata.org/wiki/Q5748245","display_name":"Heuristics","level":2,"score":0.6284556984901428},{"id":"https://openalex.org/C109718341","wikidata":"https://www.wikidata.org/wiki/Q1385229","display_name":"Metaheuristic","level":2,"score":0.6052632331848145},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5526203513145447},{"id":"https://openalex.org/C34947359","wikidata":"https://www.wikidata.org/wiki/Q665189","display_name":"Complex network","level":2,"score":0.5085622072219849},{"id":"https://openalex.org/C51823790","wikidata":"https://www.wikidata.org/wiki/Q504353","display_name":"Greedy algorithm","level":2,"score":0.41461390256881714},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.41404253244400024},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36783695220947266},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.344595730304718},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3339088559150696},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.29031550884246826},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.23958364129066467},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19159504771232605},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1731085181236267},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.3390/informatics10010018","is_oa":true,"landing_page_url":"https://doi.org/10.3390/informatics10010018","pdf_url":"https://www.mdpi.com/2227-9709/10/1/18/pdf?version=1675315652","source":{"id":"https://openalex.org/S2738238905","display_name":"Informatics","issn_l":"2227-9709","issn":["2227-9709"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Informatics","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:a3aaf5c9bfec4f3f9a59236c95b49365","is_oa":true,"landing_page_url":"https://doaj.org/article/a3aaf5c9bfec4f3f9a59236c95b49365","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Informatics, Vol 10, Iss 1, p 18 (2023)","raw_type":"article"},{"id":"pmh:oai:mdpi.com:/2227-9709/10/1/18/","is_oa":true,"landing_page_url":"https://dx.doi.org/10.3390/informatics10010018","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Informatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/informatics10010018","is_oa":true,"landing_page_url":"https://doi.org/10.3390/informatics10010018","pdf_url":"https://www.mdpi.com/2227-9709/10/1/18/pdf?version=1675315652","source":{"id":"https://openalex.org/S2738238905","display_name":"Informatics","issn_l":"2227-9709","issn":["2227-9709"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Informatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4318777814.pdf"},"referenced_works_count":89,"referenced_works":["https://openalex.org/W124474529","https://openalex.org/W1482090313","https://openalex.org/W1595159159","https://openalex.org/W1971421925","https://openalex.org/W1976209715","https://openalex.org/W1984762043","https://openalex.org/W1985625141","https://openalex.org/W1987588766","https://openalex.org/W1991408655","https://openalex.org/W1997676637","https://openalex.org/W1997792415","https://openalex.org/W2010707723","https://openalex.org/W2015953751","https://openalex.org/W2017196268","https://openalex.org/W2022326234","https://openalex.org/W2023655578","https://openalex.org/W2026840856","https://openalex.org/W2040941311","https://openalex.org/W2043734096","https://openalex.org/W2044400205","https://openalex.org/W2045299509","https://openalex.org/W2055211963","https://openalex.org/W2055897235","https://openalex.org/W2061099285","https://openalex.org/W2062533676","https://openalex.org/W2072955302","https://openalex.org/W2075283200","https://openalex.org/W2081320767","https://openalex.org/W2083045667","https://openalex.org/W2089458547","https://openalex.org/W2095293504","https://openalex.org/W2096631127","https://openalex.org/W2109248504","https://openalex.org/W2109384743","https://openalex.org/W2109726592","https://openalex.org/W2110699703","https://openalex.org/W2111141472","https://openalex.org/W2113654464","https://openalex.org/W2117495845","https://openalex.org/W2119430977","https://openalex.org/W2120043163","https://openalex.org/W2121470019","https://openalex.org/W2125509133","https://openalex.org/W2127048411","https://openalex.org/W2128366083","https://openalex.org/W2131681506","https://openalex.org/W2134662941","https://openalex.org/W2152227081","https://openalex.org/W2153624566","https://openalex.org/W2155320925","https://openalex.org/W2157305458","https://openalex.org/W2157734830","https://openalex.org/W2159788203","https://openalex.org/W2161455936","https://openalex.org/W2163480486","https://openalex.org/W2164855953","https://openalex.org/W2168264491","https://openalex.org/W2312464733","https://openalex.org/W2398987174","https://openalex.org/W2519766163","https://openalex.org/W2555551907","https://openalex.org/W2556598943","https://openalex.org/W2571863445","https://openalex.org/W2588285210","https://openalex.org/W2807523795","https://openalex.org/W2901601040","https://openalex.org/W2916522504","https://openalex.org/W2943186426","https://openalex.org/W2963194239","https://openalex.org/W2965487769","https://openalex.org/W2970611513","https://openalex.org/W3008477218","https://openalex.org/W3034176524","https://openalex.org/W3044484717","https://openalex.org/W3087406311","https://openalex.org/W3088740455","https://openalex.org/W3099768174","https://openalex.org/W3100026424","https://openalex.org/W3102641634","https://openalex.org/W3165167507","https://openalex.org/W3181833190","https://openalex.org/W3201854766","https://openalex.org/W4235169531","https://openalex.org/W4246565613","https://openalex.org/W4283584023","https://openalex.org/W4312807571","https://openalex.org/W4321504823","https://openalex.org/W6756006911","https://openalex.org/W6783614237"],"related_works":["https://openalex.org/W3173606202","https://openalex.org/W2011882979","https://openalex.org/W1917559760","https://openalex.org/W2390492032","https://openalex.org/W2111642621","https://openalex.org/W2057306547","https://openalex.org/W2386800983","https://openalex.org/W2070704205","https://openalex.org/W2353485001","https://openalex.org/W2578454336"],"abstract_inverted_index":{"Disease":[0],"phenotypes":[1],"are":[2,97,193],"generally":[3],"caused":[4],"by":[5,245],"the":[6,18,28,38,52,55,62,66,76,84,126,144,155,167,190,202,227,237],"failure":[7],"of":[8,20,31,54,65,78,157,169],"gene":[9],"modules":[10,88],"which":[11,105,160],"often":[12],"have":[13],"similar":[14,189,235],"biological":[15,21,87,94,127],"roles.":[16],"Through":[17],"study":[19],"networks,":[22],"it":[23,230],"is":[24,44,135],"possible":[25],"to":[26,36,50,118,151,163,176,194,236,242],"identify":[27,37,119,164],"intrinsic":[29],"structure":[30,53],"molecular":[32],"interactions":[33],"in":[34,57,75,92,125],"order":[35,117],"so-called":[39],"\u201cdisease":[40],"modules\u201d.":[41],"Community":[42],"detection":[43],"an":[45],"interesting":[46],"and":[47,68,89,104,112,121,137,143,184,201],"valuable":[48],"approach":[49],"discovering":[51],"community":[56],"a":[58,71,101,129],"complex":[59,79],"network,":[60],"revealing":[61],"internal":[63],"organization":[64],"nodes,":[67],"has":[69],"become":[70],"leading":[72],"research":[73],"topic":[74],"analysis":[77,180],"networks.":[80],"This":[81],"work":[82],"investigates":[83],"link":[85],"between":[86],"network":[90],"communities":[91,124,192,233],"test-case":[93],"networks":[95],"that":[96,186,208],"commonly":[98],"used":[99],"as":[100],"reference":[102],"point":[103],"include":[106],"Protein\u2013Protein":[107],"Interaction":[108],"Networks,":[109],"Metabolic":[110],"Networks":[111],"Transcriptional":[113],"Regulation":[114],"Networks.":[115],"In":[116],"small":[120],"structurally":[122],"well-defined":[123],"context,":[128],"hybrid":[130],"immune":[131],"metaheuristic":[132],"algorithm":[133,147],"Hybrid-IA":[134,170,212],"proposed":[136],"compared":[138,241],"with":[139,149,174],"several":[140],"metaheuristics,":[141,224],"hyper-heuristics,":[142],"well-known":[145,178],"greedy":[146],"Louvain,":[148,219],"respect":[150,175],"modularity":[152,158,216],"maximization.":[153],"Considering":[154],"limitation":[156],"optimization,":[159],"can":[161,231],"fail":[162],"smaller":[165],"communities,":[166],"reliability":[168],"was":[171],"also":[172],"analyzed":[173],"three":[177],"sensitivity":[179],"measures":[181],"(NMI,":[182],"ARI":[183],"NVI)":[185],"assess":[187],"how":[188],"detected":[191,244],"real":[195,238],"ones.":[196],"By":[197],"inspecting":[198],"all":[199,222],"outcomes":[200],"performed":[203],"comparisons,":[204],"we":[205],"will":[206],"see":[207],"on":[209,226],"one":[210],"hand":[211],"finds":[213],"slightly":[214],"lower":[215],"values":[217],"than":[218],"but":[220],"outperforms":[221],"other":[223,228],"while":[225],"hand,":[229],"detect":[232],"more":[234],"ones":[239],"when":[240],"those":[243],"Louvain.":[246]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2025-12-21T01:58:51.020947","created_date":"2025-10-10T00:00:00"}
