{"id":"https://openalex.org/W3189779043","doi":"https://doi.org/10.3390/e23081038","title":"Entropy and Fractal Dimension Study of the TDP-43 Protein Low Complexity Domain Sequence in ALS Disease Severity and SARS-CoV-2 Gene Sequences in Virulence Variability","display_name":"Entropy and Fractal Dimension Study of the TDP-43 Protein Low Complexity Domain Sequence in ALS Disease Severity and SARS-CoV-2 Gene Sequences in Virulence Variability","publication_year":2021,"publication_date":"2021-08-12","ids":{"openalex":"https://openalex.org/W3189779043","doi":"https://doi.org/10.3390/e23081038","mag":"3189779043","pmid":"https://pubmed.ncbi.nlm.nih.gov/34441178"},"language":"en","primary_location":{"id":"doi:10.3390/e23081038","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e23081038","pdf_url":"https://www.mdpi.com/1099-4300/23/8/1038/pdf?version=1628763559","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1099-4300/23/8/1038/pdf?version=1628763559","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036724513","display_name":"Sunil Dehipawala","orcid":null},"institutions":[{"id":"https://openalex.org/I174216632","display_name":"City University of New York","ror":"https://ror.org/00453a208","country_code":"US","type":"education","lineage":["https://openalex.org/I174216632"]},{"id":"https://openalex.org/I47807954","display_name":"Queensborough Community College, CUNY","ror":"https://ror.org/03a4vma36","country_code":"US","type":"education","lineage":["https://openalex.org/I47807954"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sunil Dehipawala","raw_affiliation_strings":["Physics Department, City University of New York Queensborough Community College, Bayside, NY 11364, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Physics Department, City University of New York Queensborough Community College, Bayside, NY 11364, USA","institution_ids":["https://openalex.org/I47807954","https://openalex.org/I174216632"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111620026","display_name":"Eric Cheung","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Eric Cheung","raw_affiliation_strings":["Psychiatry Department, Montefiore Mount Vernon Hospital, Mount Vernon, NY 10550, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Psychiatry Department, Montefiore Mount Vernon Hospital, Mount Vernon, NY 10550, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054579740","display_name":"G. Tremberger","orcid":null},"institutions":[{"id":"https://openalex.org/I174216632","display_name":"City University of New York","ror":"https://ror.org/00453a208","country_code":"US","type":"education","lineage":["https://openalex.org/I174216632"]},{"id":"https://openalex.org/I47807954","display_name":"Queensborough Community College, CUNY","ror":"https://ror.org/03a4vma36","country_code":"US","type":"education","lineage":["https://openalex.org/I47807954"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"George Tremberger","raw_affiliation_strings":["Physics Department, City University of New York Queensborough Community College, Bayside, NY 11364, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Physics Department, City University of New York Queensborough Community College, Bayside, NY 11364, USA","institution_ids":["https://openalex.org/I47807954","https://openalex.org/I174216632"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112294008","display_name":"Tak Cheung","orcid":null},"institutions":[{"id":"https://openalex.org/I174216632","display_name":"City University of New York","ror":"https://ror.org/00453a208","country_code":"US","type":"education","lineage":["https://openalex.org/I174216632"]},{"id":"https://openalex.org/I47807954","display_name":"Queensborough Community College, CUNY","ror":"https://ror.org/03a4vma36","country_code":"US","type":"education","lineage":["https://openalex.org/I47807954"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Tak Cheung","raw_affiliation_strings":["Physics Department, City University of New York Queensborough Community College, Bayside, NY 11364, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Physics Department, City University of New York Queensborough Community College, Bayside, NY 11364, USA","institution_ids":["https://openalex.org/I47807954","https://openalex.org/I174216632"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5112294008"],"corresponding_institution_ids":["https://openalex.org/I174216632","https://openalex.org/I47807954"],"apc_list":{"value":2000,"currency":"CHF","value_usd":2165},"apc_paid":{"value":2000,"currency":"CHF","value_usd":2165},"fwci":0.5376,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.74502201,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":96},"biblio":{"volume":"23","issue":"8","first_page":"1038","last_page":"1038"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13539","display_name":"thermodynamics and calorimetric analyses","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13539","display_name":"thermodynamics and calorimetric analyses","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/fractal-dimension","display_name":"Fractal dimension","score":0.7389053702354431},{"id":"https://openalex.org/keywords/fractal","display_name":"Fractal","score":0.6190964579582214},{"id":"https://openalex.org/keywords/conformational-entropy","display_name":"Conformational entropy","score":0.6186686158180237},{"id":"https://openalex.org/keywords/entropy","display_name":"Entropy (arrow of time)","score":0.612275242805481},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.543871283531189},{"id":"https://openalex.org/keywords/sliding-window-protocol","display_name":"Sliding window protocol","score":0.5063050985336304},{"id":"https://openalex.org/keywords/virulence","display_name":"Virulence","score":0.49612554907798767},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.44082844257354736},{"id":"https://openalex.org/keywords/correlation-dimension","display_name":"Correlation dimension","score":0.4384315609931946},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.42471233010292053},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.4228164851665497},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.38751059770584106},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.38311445713043213},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.3712415099143982},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.32338660955429077},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.31138741970062256},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.16385462880134583},{"id":"https://openalex.org/keywords/mathematical-analysis","display_name":"Mathematical analysis","score":0.1181829571723938},{"id":"https://openalex.org/keywords/window","display_name":"Window (computing)","score":0.0729936957359314}],"concepts":[{"id":"https://openalex.org/C26546657","wikidata":"https://www.wikidata.org/wiki/Q1412452","display_name":"Fractal dimension","level":3,"score":0.7389053702354431},{"id":"https://openalex.org/C40636538","wikidata":"https://www.wikidata.org/wiki/Q81392","display_name":"Fractal","level":2,"score":0.6190964579582214},{"id":"https://openalex.org/C69308434","wikidata":"https://www.wikidata.org/wiki/Q5160266","display_name":"Conformational entropy","level":3,"score":0.6186686158180237},{"id":"https://openalex.org/C106301342","wikidata":"https://www.wikidata.org/wiki/Q4117933","display_name":"Entropy (arrow of time)","level":2,"score":0.612275242805481},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.543871283531189},{"id":"https://openalex.org/C102392041","wikidata":"https://www.wikidata.org/wiki/Q592860","display_name":"Sliding window protocol","level":3,"score":0.5063050985336304},{"id":"https://openalex.org/C60987743","wikidata":"https://www.wikidata.org/wiki/Q1460232","display_name":"Virulence","level":3,"score":0.49612554907798767},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.44082844257354736},{"id":"https://openalex.org/C110601934","wikidata":"https://www.wikidata.org/wiki/Q5172849","display_name":"Correlation dimension","level":4,"score":0.4384315609931946},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.42471233010292053},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.4228164851665497},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.38751059770584106},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38311445713043213},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.3712415099143982},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.32338660955429077},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.31138741970062256},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.16385462880134583},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.1181829571723938},{"id":"https://openalex.org/C2778751112","wikidata":"https://www.wikidata.org/wiki/Q835016","display_name":"Window (computing)","level":2,"score":0.0729936957359314},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.3390/e23081038","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e23081038","pdf_url":"https://www.mdpi.com/1099-4300/23/8/1038/pdf?version=1628763559","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},{"id":"pmid:34441178","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34441178","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy (Basel, Switzerland)","raw_type":null},{"id":"pmh:oai:doaj.org/article:2469a46e206e43dc96f047dcb4e785b7","is_oa":true,"landing_page_url":"https://doaj.org/article/2469a46e206e43dc96f047dcb4e785b7","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy, Vol 23, Iss 8, p 1038 (2021)","raw_type":"article"},{"id":"pmh:oai:mdpi.com:/1099-4300/23/8/1038/","is_oa":true,"landing_page_url":"https://dx.doi.org/10.3390/e23081038","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy; Volume 23; Issue 8; Pages: 1038","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:8393862","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8393862","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy (Basel)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/e23081038","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e23081038","pdf_url":"https://www.mdpi.com/1099-4300/23/8/1038/pdf?version=1628763559","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.699999988079071,"display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W3189779043.pdf"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W1966637715","https://openalex.org/W1986069605","https://openalex.org/W1994233698","https://openalex.org/W2007356320","https://openalex.org/W2023921790","https://openalex.org/W2086166831","https://openalex.org/W2117614080","https://openalex.org/W2144546507","https://openalex.org/W2146120203","https://openalex.org/W2165101781","https://openalex.org/W2805623844","https://openalex.org/W2911237161","https://openalex.org/W2913470513","https://openalex.org/W2950448148","https://openalex.org/W2951562469","https://openalex.org/W2971718802","https://openalex.org/W2971747221","https://openalex.org/W2990752535","https://openalex.org/W2995886801","https://openalex.org/W3002679225","https://openalex.org/W3081901842","https://openalex.org/W3095839623","https://openalex.org/W3117154968","https://openalex.org/W3127345045","https://openalex.org/W3127701774","https://openalex.org/W3133558561","https://openalex.org/W3134906456","https://openalex.org/W3136083598","https://openalex.org/W3137886193","https://openalex.org/W3139390776","https://openalex.org/W3160281400","https://openalex.org/W4255721438"],"related_works":["https://openalex.org/W2353818951","https://openalex.org/W1605879311","https://openalex.org/W2611980620","https://openalex.org/W2385763735","https://openalex.org/W2386394344","https://openalex.org/W2382806131","https://openalex.org/W2006683254","https://openalex.org/W2370628457","https://openalex.org/W4382459699","https://openalex.org/W2375779197"],"abstract_inverted_index":{"The":[0,30,97,121,145,173,200],"low":[1],"complexity":[2],"domain":[3],"(LCD)":[4],"sequence":[5,23,37,72,182],"has":[6],"been":[7],"defined":[8],"in":[9,24,102,194,205],"terms":[10],"of":[11,27,51,69,127,135],"entropy":[12,52,73,152,187],"using":[13,60,164],"a":[14,21,128,165],"12":[15],"amino":[16,81],"acid":[17,82],"sliding":[18,94],"window":[19,95],"along":[20],"protein":[22,36,191],"the":[25,61,70,80,86,93,104,125,136,148,169,177,184,189],"study":[26],"disease-related":[28],"genes.":[29],"amyotrophic":[31],"lateral":[32],"sclerosis":[33],"(ALS)-related":[34],"TDP-43":[35],"with":[38,196],"intra-LCD":[39,71],"structural":[40],"information":[41],"based":[42],"on":[43,168],"cryo-EM":[44],"data":[45],"was":[46,58,130,154,210],"published":[47],"recently.":[48],"An":[49],"application":[50,126],"and":[53,63,74,84,142,151,162,188],"Higuchi":[54,75],"fractal":[55,76,192],"dimension":[56,77,107,117],"calculations":[57],"described":[59],"Znf521":[62],"HAR1":[64],"sequences.":[65],"A":[66],"computational":[67,98,122],"analysis":[68,134,174],"values":[78,118,153],"at":[79,85,113],"level":[83,89],"ATCG":[87],"nucleotide":[88,186],"were":[90,100,119],"conducted":[91],"without":[92,124],"requirement.":[96],"results":[99],"consistent":[101],"predicting":[103],"intermediate":[105],"entropy/fractal":[106,116],"value":[108,198],"produced":[109],"when":[110],"two":[111,114],"subsequences":[112],"different":[115],"combined.":[120],"method":[123],"sliding-window":[129],"extended":[131],"to":[132,156,207],"an":[133],"recently":[137],"reported":[138],"virulent":[139,179],"genes-Orf6,":[140],"Nsp6,":[141],"Orf7a-in":[143],"SARS-CoV-2.":[144],"relationship":[146],"between":[147,160],"virulence":[149],"functionality":[150],"found":[155,175],"have":[157],"correlation":[158],"coefficients":[159],"0.84":[161],"0.99,":[163],"5%":[166],"uncertainty":[167],"cell":[170],"viability":[171],"data.":[172],"that":[176],"most":[178],"Orf6":[180,201],"gene":[181],"had":[183],"lowest":[185],"highest":[190],"dimension,":[193],"line":[195],"extreme":[197],"theory.":[199],"codon":[202],"usage":[203],"bias":[204],"relation":[206],"vaccine":[208],"design":[209],"discussed.":[211]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":2}],"updated_date":"2026-05-22T06:13:13.366637","created_date":"2025-10-10T00:00:00"}
