{"id":"https://openalex.org/W3039052417","doi":"https://doi.org/10.3390/data5030058","title":"An Update to the TraVA Database: Time Series of Capsella bursa-pastoris Shoot Apical Meristems during Transition to Flowering","display_name":"An Update to the TraVA Database: Time Series of Capsella bursa-pastoris Shoot Apical Meristems during Transition to Flowering","publication_year":2020,"publication_date":"2020-06-30","ids":{"openalex":"https://openalex.org/W3039052417","doi":"https://doi.org/10.3390/data5030058","mag":"3039052417"},"language":"en","primary_location":{"id":"doi:10.3390/data5030058","is_oa":true,"landing_page_url":"https://doi.org/10.3390/data5030058","pdf_url":"https://www.mdpi.com/2306-5729/5/3/58/pdf?version=1594176821","source":{"id":"https://openalex.org/S4210226510","display_name":"Data","issn_l":"2306-5729","issn":["2306-5729"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/2306-5729/5/3/58/pdf?version=1594176821","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046531528","display_name":"Anna V. Klepikova","orcid":"https://orcid.org/0000-0001-6459-2170"},"institutions":[{"id":"https://openalex.org/I4210107660","display_name":"Institute for Information Transmission Problems","ror":"https://ror.org/013w2d378","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210107660"]}],"countries":["RU"],"is_corresponding":true,"raw_author_name":"Anna V. Klepikova","raw_affiliation_strings":["Institute for Information Transmission Problems of the Russian Academy of Sciences, 127051 Moscow, Russia"],"raw_orcid":"https://orcid.org/0000-0001-6459-2170","affiliations":[{"raw_affiliation_string":"Institute for Information Transmission Problems of the Russian Academy of Sciences, 127051 Moscow, Russia","institution_ids":["https://openalex.org/I4210107660"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013428161","display_name":"Artem S. Kasianov","orcid":"https://orcid.org/0000-0001-8086-392X"},"institutions":[{"id":"https://openalex.org/I4210107660","display_name":"Institute for Information Transmission Problems","ror":"https://ror.org/013w2d378","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210107660"]},{"id":"https://openalex.org/I4210148309","display_name":"Vavilov Institute of General Genetics","ror":"https://ror.org/05ermrg42","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210129690","https://openalex.org/I4210148309"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Artem S. Kasianov","raw_affiliation_strings":["Institute for Information Transmission Problems of the Russian Academy of Sciences, 127051 Moscow, Russia","N.I. Vavilov Institute of General Genetics, Russian Academy of Sciences, 119991 Moscow, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Information Transmission Problems of the Russian Academy of Sciences, 127051 Moscow, Russia","institution_ids":["https://openalex.org/I4210107660"]},{"raw_affiliation_string":"N.I. Vavilov Institute of General Genetics, Russian Academy of Sciences, 119991 Moscow, Russia","institution_ids":["https://openalex.org/I4210148309"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5046531528"],"corresponding_institution_ids":["https://openalex.org/I4210107660"],"apc_list":{"value":1600,"currency":"CHF","value_usd":1732},"apc_paid":{"value":1600,"currency":"CHF","value_usd":1732},"fwci":0.0836,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.44448346,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"5","issue":"3","first_page":"58","last_page":"58"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10303","display_name":"Photosynthetic Processes and Mechanisms","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10303","display_name":"Photosynthetic Processes and Mechanisms","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.98580002784729,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/meristem","display_name":"Meristem","score":0.7175748348236084},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7025822401046753},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.64520263671875},{"id":"https://openalex.org/keywords/polyploid","display_name":"Polyploid","score":0.4392509460449219},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.43055135011672974},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.41715461015701294},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3773100972175598},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37321481108665466},{"id":"https://openalex.org/keywords/botany","display_name":"Botany","score":0.33652055263519287},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2565299868583679},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.23969539999961853},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.18607193231582642},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.16413354873657227},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.09408524632453918}],"concepts":[{"id":"https://openalex.org/C126021549","wikidata":"https://www.wikidata.org/wiki/Q207604","display_name":"Meristem","level":3,"score":0.7175748348236084},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7025822401046753},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.64520263671875},{"id":"https://openalex.org/C2776626444","wikidata":"https://www.wikidata.org/wiki/Q213410","display_name":"Polyploid","level":4,"score":0.4392509460449219},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.43055135011672974},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.41715461015701294},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3773100972175598},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37321481108665466},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.33652055263519287},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2565299868583679},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.23969539999961853},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.18607193231582642},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.16413354873657227},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.09408524632453918}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3390/data5030058","is_oa":true,"landing_page_url":"https://doi.org/10.3390/data5030058","pdf_url":"https://www.mdpi.com/2306-5729/5/3/58/pdf?version=1594176821","source":{"id":"https://openalex.org/S4210226510","display_name":"Data","issn_l":"2306-5729","issn":["2306-5729"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data","raw_type":"journal-article"},{"id":"pmh:oai:RePEc:gam:jdataj:v:5:y:2020:i:3:p:58-:d:378486","is_oa":false,"landing_page_url":"https://www.mdpi.com/2306-5729/5/3/58/","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:f1a88e5ab89d43739bbc23f67ff17a05","is_oa":true,"landing_page_url":"https://doaj.org/article/f1a88e5ab89d43739bbc23f67ff17a05","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Data, Vol 5, Iss 3, p 58 (2020)","raw_type":"article"},{"id":"pmh:oai:mdpi.com:/2306-5729/5/3/58/","is_oa":true,"landing_page_url":"https://dx.doi.org/10.3390/data5030058","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Data; Volume 5; Issue 3; Pages: 58","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/data5030058","is_oa":true,"landing_page_url":"https://doi.org/10.3390/data5030058","pdf_url":"https://www.mdpi.com/2306-5729/5/3/58/pdf?version=1594176821","source":{"id":"https://openalex.org/S4210226510","display_name":"Data","issn_l":"2306-5729","issn":["2306-5729"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.5899999737739563}],"awards":[{"id":"https://openalex.org/G6114485182","display_name":null,"funder_award_id":"18-34-00682","funder_id":"https://openalex.org/F4320321079","funder_display_name":"Russian Foundation for Basic Research"}],"funders":[{"id":"https://openalex.org/F4320321079","display_name":"Russian Foundation for Basic Research","ror":"https://ror.org/02mh1ke95"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3039052417.pdf","grobid_xml":"https://content.openalex.org/works/W3039052417.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1483984725","https://openalex.org/W1882609858","https://openalex.org/W1968778077","https://openalex.org/W2021431764","https://openalex.org/W2114196392","https://openalex.org/W2117072941","https://openalex.org/W2118030211","https://openalex.org/W2122806992","https://openalex.org/W2134737128","https://openalex.org/W2144587654","https://openalex.org/W2144738674","https://openalex.org/W2152239989","https://openalex.org/W2158061581","https://openalex.org/W2179438025","https://openalex.org/W2597721517","https://openalex.org/W2604834982","https://openalex.org/W2891576925","https://openalex.org/W2911194630","https://openalex.org/W2974845039"],"related_works":["https://openalex.org/W2356719812","https://openalex.org/W1498812349","https://openalex.org/W1992159363","https://openalex.org/W2011699422","https://openalex.org/W4385352654","https://openalex.org/W2046045458","https://openalex.org/W2369539772","https://openalex.org/W2762631138","https://openalex.org/W2924133609","https://openalex.org/W2113386331"],"abstract_inverted_index":{"Transition":[0],"to":[1,69,86],"flowering":[2,70],"is":[3,21],"a":[4,15,22,50,100],"crucial":[5],"part":[6],"of":[7,14,19,28,38,54,78,103],"plant":[8],"life":[9],"directly":[10],"affecting":[11],"the":[12,26,36,46,79,83,104,108,113],"fitness":[13],"plant.":[16],"Time":[17],"series":[18,53,66],"transcriptomes":[20],"useful":[23],"tool":[24],"for":[25,35,75],"investigation":[27],"process":[29],"dynamics":[30],"and":[31,41,71,115],"can":[32,72],"be":[33,73],"used":[34,74],"identification":[37],"novel":[39],"genes":[40],"gene":[42,105],"networks":[43],"involved":[44],"in":[45,91],"process.":[47,80],"We":[48],"present":[49],"detailed":[51],"time":[52,65],"polyploid":[55],"Capsella":[56],"bursa-pastoris":[57],"shoot":[58],"apical":[59],"meristems":[60],"created":[61],"with":[62],"RNA-seq.":[63],"The":[64],"covers":[67],"transition":[68],"thorough":[76],"analysis":[77,111],"To":[81],"make":[82],"data":[84,117],"easy":[85],"access,":[87],"we":[88],"uploaded":[89],"them":[90],"our":[92],"database":[93],"Transcriptome":[94],"Variation":[95],"Analysis":[96],"(TraVA),":[97],"which":[98],"provides":[99],"convenient":[101],"depiction":[102],"expression":[106,110],"profiles,":[107],"differential":[109],"between":[112],"homeologs":[114],"quick":[116],"extraction.":[118]},"counts_by_year":[{"year":2023,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2020-07-10T00:00:00"}
