{"id":"https://openalex.org/W4411604962","doi":"https://doi.org/10.3390/data10070099","title":"Dataset and AI Workflow for Deep Learning Image Classification of Ulcerative Colitis and Colorectal Cancer","display_name":"Dataset and AI Workflow for Deep Learning Image Classification of Ulcerative Colitis and Colorectal Cancer","publication_year":2025,"publication_date":"2025-06-24","ids":{"openalex":"https://openalex.org/W4411604962","doi":"https://doi.org/10.3390/data10070099"},"language":"en","primary_location":{"id":"doi:10.3390/data10070099","is_oa":true,"landing_page_url":"https://doi.org/10.3390/data10070099","pdf_url":null,"source":{"id":"https://openalex.org/S4210226510","display_name":"Data","issn_l":"2306-5729","issn":["2306-5729"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.3390/data10070099","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084180858","display_name":"Joaquim Carreras","orcid":"https://orcid.org/0000-0002-6129-8299"},"institutions":[{"id":"https://openalex.org/I1314466530","display_name":"Tokai University","ror":"https://ror.org/01p7qe739","country_code":"JP","type":"education","lineage":["https://openalex.org/I1314466530"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Joaquim Carreras","raw_affiliation_strings":["Department of Pathology, School of Medicine, Tokai University, 143 Shimokasuya, Isehara 259-1193, Kanagawa, Japan"],"raw_orcid":"https://orcid.org/0000-0002-6129-8299","affiliations":[{"raw_affiliation_string":"Department of Pathology, School of Medicine, Tokai University, 143 Shimokasuya, Isehara 259-1193, Kanagawa, Japan","institution_ids":["https://openalex.org/I1314466530"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010517161","display_name":"Giovanna Roncador","orcid":"https://orcid.org/0000-0002-9807-2875"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]},{"id":"https://openalex.org/I4210138819","display_name":"Centro de Investigaci\u00f3n del C\u00e1ncer","ror":"https://ror.org/04rxrdv16","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I184999862","https://openalex.org/I4210138819"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Giovanna Roncador","raw_affiliation_strings":["Monoclonal Antibodies Unit, Spanish National Cancer Research Center (CNIO), Melchor Fernandez Almagro 3, 28029 Madrid, Spain"],"raw_orcid":"https://orcid.org/0000-0002-9807-2875","affiliations":[{"raw_affiliation_string":"Monoclonal Antibodies Unit, Spanish National Cancer Research Center (CNIO), Melchor Fernandez Almagro 3, 28029 Madrid, Spain","institution_ids":["https://openalex.org/I4210089594","https://openalex.org/I4210138819"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046629044","display_name":"Rifat Hamoudi","orcid":"https://orcid.org/0000-0002-1402-0868"},"institutions":[{"id":"https://openalex.org/I117222138","display_name":"Abu Dhabi University","ror":"https://ror.org/01r3kjq03","country_code":"AE","type":"education","lineage":["https://openalex.org/I117222138"]},{"id":"https://openalex.org/I29891158","display_name":"University of Sharjah","ror":"https://ror.org/00engpz63","country_code":"AE","type":"education","lineage":["https://openalex.org/I29891158"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["AE","GB"],"is_corresponding":false,"raw_author_name":"Rifat Hamoudi","raw_affiliation_strings":["ASPIRE Precision Medicine Research Institute Abu Dhabi, University of Sharjah, Sharjah P.O. Box 27272, United Arab Emirates","Biomedically Informed Artificial Intelligence Laboratory (BIMAI-Lab), University of Sharjah, Sharjah P.O. Box 27272, United Arab Emirates","Center of Excellence for Precision Medicine, University of Sharjah, Sharjah P.O. Box 27272, United Arab Emirates","Department of Clinical Sciences, College of Medicine, University of Sharjah, Sharjah P.O. Box 27272, United Arab Emirates","Division of Surgery and Interventional Science, University College London, London NW3 2PF, UK"],"raw_orcid":"https://orcid.org/0000-0002-1402-0868","affiliations":[{"raw_affiliation_string":"ASPIRE Precision Medicine Research Institute Abu Dhabi, University of Sharjah, Sharjah P.O. Box 27272, United Arab Emirates","institution_ids":["https://openalex.org/I29891158","https://openalex.org/I117222138"]},{"raw_affiliation_string":"Biomedically Informed Artificial Intelligence Laboratory (BIMAI-Lab), University of Sharjah, Sharjah P.O. Box 27272, United Arab Emirates","institution_ids":["https://openalex.org/I29891158"]},{"raw_affiliation_string":"Center of Excellence for Precision Medicine, University of Sharjah, Sharjah P.O. Box 27272, United Arab Emirates","institution_ids":["https://openalex.org/I29891158"]},{"raw_affiliation_string":"Department of Clinical Sciences, College of Medicine, University of Sharjah, Sharjah P.O. Box 27272, United Arab Emirates","institution_ids":["https://openalex.org/I29891158"]},{"raw_affiliation_string":"Division of Surgery and Interventional Science, University College London, London NW3 2PF, UK","institution_ids":["https://openalex.org/I45129253"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5084180858"],"corresponding_institution_ids":["https://openalex.org/I1314466530"],"apc_list":{"value":1600,"currency":"CHF","value_usd":1732},"apc_paid":{"value":1600,"currency":"CHF","value_usd":1732},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.21827703,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"10","issue":"7","first_page":"99","last_page":"99"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10552","display_name":"Colorectal Cancer Screening and Detection","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10552","display_name":"Colorectal Cancer Screening and Detection","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10134","display_name":"Inflammatory Bowel Disease","score":0.9904000163078308,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ulcerative-colitis","display_name":"Ulcerative colitis","score":0.8508983850479126},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7456899881362915},{"id":"https://openalex.org/keywords/colorectal-cancer","display_name":"Colorectal cancer","score":0.6021276116371155},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.45294541120529175},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4472735524177551},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.43424057960510254},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.34240013360977173},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.2938113808631897},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.12126591801643372},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.05455148220062256}],"concepts":[{"id":"https://openalex.org/C2780479503","wikidata":"https://www.wikidata.org/wiki/Q1477","display_name":"Ulcerative colitis","level":3,"score":0.8508983850479126},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7456899881362915},{"id":"https://openalex.org/C526805850","wikidata":"https://www.wikidata.org/wiki/Q188874","display_name":"Colorectal cancer","level":3,"score":0.6021276116371155},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.45294541120529175},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4472735524177551},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.43424057960510254},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.34240013360977173},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.2938113808631897},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.12126591801643372},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.05455148220062256}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.3390/data10070099","is_oa":true,"landing_page_url":"https://doi.org/10.3390/data10070099","pdf_url":null,"source":{"id":"https://openalex.org/S4210226510","display_name":"Data","issn_l":"2306-5729","issn":["2306-5729"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:f7beba3e3d2749f1a4811776a31d3f58","is_oa":true,"landing_page_url":"https://doaj.org/article/f7beba3e3d2749f1a4811776a31d3f58","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Data, Vol 10, Iss 7, p 99 (2025)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3390/data10070099","is_oa":true,"landing_page_url":"https://doi.org/10.3390/data10070099","pdf_url":null,"source":{"id":"https://openalex.org/S4210226510","display_name":"Data","issn_l":"2306-5729","issn":["2306-5729"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1591865387","display_name":null,"funder_award_id":"18K15100","funder_id":"https://openalex.org/F4320316805","funder_display_name":"University of Sharjah"},{"id":"https://openalex.org/G2072334286","display_name":null,"funder_award_id":"23K06454","funder_id":"https://openalex.org/F4320316805","funder_display_name":"University of Sharjah"},{"id":"https://openalex.org/G3779616742","display_name":null,"funder_award_id":"15K19061","funder_id":"https://openalex.org/F4320316805","funder_display_name":"University of Sharjah"},{"id":"https://openalex.org/G419908252","display_name":null,"funder_award_id":"24010902153","funder_id":"https://openalex.org/F4320316805","funder_display_name":"University of Sharjah"},{"id":"https://openalex.org/G5931643899","display_name":null,"funder_award_id":"15K19061","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G6232353353","display_name":null,"funder_award_id":"23K06454","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G645192929","display_name":null,"funder_award_id":"VRI-20\u201310","funder_id":"https://openalex.org/F4320316805","funder_display_name":"University of Sharjah"},{"id":"https://openalex.org/G6822813681","display_name":null,"funder_award_id":"24010902153","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G7881863720","display_name":null,"funder_award_id":"18K15100","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G8835299820","display_name":null,"funder_award_id":"VRI-20\u201310","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"}],"funders":[{"id":"https://openalex.org/F4320316805","display_name":"University of Sharjah","ror":"https://ror.org/00engpz63"},{"id":"https://openalex.org/F4320320912","display_name":"Ministry of Education, Culture, Sports, Science and Technology","ror":"https://ror.org/048rj2z13"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":84,"referenced_works":["https://openalex.org/W1881593359","https://openalex.org/W1964102710","https://openalex.org/W1986079650","https://openalex.org/W2019988876","https://openalex.org/W2047208232","https://openalex.org/W2116318925","https://openalex.org/W2147757080","https://openalex.org/W2171789845","https://openalex.org/W2188248802","https://openalex.org/W2194775991","https://openalex.org/W2321205867","https://openalex.org/W2337372962","https://openalex.org/W2536954905","https://openalex.org/W2763369925","https://openalex.org/W2799566498","https://openalex.org/W2810298079","https://openalex.org/W2891113118","https://openalex.org/W2935904706","https://openalex.org/W2962858109","https://openalex.org/W2988136041","https://openalex.org/W3006764495","https://openalex.org/W3013430569","https://openalex.org/W3024444185","https://openalex.org/W3050480859","https://openalex.org/W3084241168","https://openalex.org/W3084741591","https://openalex.org/W3092547488","https://openalex.org/W3154170002","https://openalex.org/W3156014087","https://openalex.org/W3164700519","https://openalex.org/W3168439262","https://openalex.org/W3177911292","https://openalex.org/W3184533981","https://openalex.org/W3210165916","https://openalex.org/W4210327840","https://openalex.org/W4211138554","https://openalex.org/W4211168195","https://openalex.org/W4212978502","https://openalex.org/W4213294193","https://openalex.org/W4214839262","https://openalex.org/W4220841779","https://openalex.org/W4221133130","https://openalex.org/W4225811788","https://openalex.org/W4226172047","https://openalex.org/W4235864511","https://openalex.org/W4280564702","https://openalex.org/W4285809753","https://openalex.org/W4288809219","https://openalex.org/W4306662868","https://openalex.org/W4306910605","https://openalex.org/W4309247091","https://openalex.org/W4309506674","https://openalex.org/W4309947001","https://openalex.org/W4312211211","https://openalex.org/W4312563640","https://openalex.org/W4315797293","https://openalex.org/W4318779518","https://openalex.org/W4320921273","https://openalex.org/W4322762721","https://openalex.org/W4323031221","https://openalex.org/W4365445560","https://openalex.org/W4376104377","https://openalex.org/W4384341111","https://openalex.org/W4385331118","https://openalex.org/W4385728359","https://openalex.org/W4386624403","https://openalex.org/W4386979814","https://openalex.org/W4387824611","https://openalex.org/W4391383911","https://openalex.org/W4393360017","https://openalex.org/W4394611452","https://openalex.org/W4398201291","https://openalex.org/W4399562815","https://openalex.org/W4401624915","https://openalex.org/W4401637628","https://openalex.org/W4402574396","https://openalex.org/W4403158403","https://openalex.org/W4403462858","https://openalex.org/W4404063174","https://openalex.org/W4405138525","https://openalex.org/W4408110917","https://openalex.org/W6639355860","https://openalex.org/W6810715227","https://openalex.org/W6856815766"],"related_works":["https://openalex.org/W2378399001","https://openalex.org/W2381376498","https://openalex.org/W2393318770","https://openalex.org/W2369056725","https://openalex.org/W4385147599","https://openalex.org/W3151390891","https://openalex.org/W2391150797","https://openalex.org/W4224234790","https://openalex.org/W2363553858","https://openalex.org/W2363311716"],"abstract_inverted_index":{"Inflammatory":[0],"bowel":[1],"disease":[2],"(IBD)":[3],"is":[4,30,104],"a":[5,31,45,105],"chronic":[6],"inflammatory":[7],"condition":[8],"of":[9,17,37,47,50],"the":[10,15,35,96,108],"gastrointestinal":[11],"tract":[12],"characterized":[13],"by":[14],"deregulation":[16],"immuno-oncology":[18],"markers.":[19,74],"IBD":[20],"includes":[21],"ulcerative":[22,51],"colitis":[23],"and":[24,55,64,67,72,81,93,113,116],"Crohn\u2019s":[25],"disease.":[26],"Chronic":[27],"active":[28],"inflammation":[29],"risk":[32],"factor":[33],"for":[34,70,78],"development":[36],"colorectal":[38],"cancer":[39],"(CRC).":[40],"This":[41,102],"technical":[42],"note":[43],"describes":[44],"dataset":[46],"histological":[48],"images":[49],"colitis,":[52],"CRC":[53],"(adenocarcinoma),":[54],"colon":[56],"control.":[57],"The":[58,75],"samples":[59],"were":[60],"stained":[61],"with":[62],"hematoxylin":[63],"eosin":[65],"(H&amp;E),":[66],"immunohistochemically":[68],"analyzed":[69],"LAIR1":[71,112],"TOX2":[73,114],"methods":[76],"used":[77],"collecting,":[79],"processing,":[80],"analyzing":[82],"scientific":[83],"data,":[84],"including":[85],"this":[86],"dataset,":[87],"using":[88],"convolutional":[89],"neural":[90],"networks":[91],"(CNNs)":[92],"information":[94],"about":[95],"dataset\u2019s":[97],"use":[98],"are":[99],"also":[100],"described.":[101],"article":[103],"companion":[106],"to":[107],"manuscript":[109],"\u201cUlcerative":[110],"Colitis,":[111],"Expression,":[115],"Colorectal":[117],"Cancer":[118],"Deep":[119],"Learning":[120],"Image":[121],"Classification":[122],"Using":[123],"Convolutional":[124],"Neural":[125],"Networks\u201d.":[126]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
