{"id":"https://openalex.org/W4402492992","doi":"https://doi.org/10.3390/a17090409","title":"Explainable Machine Learning Model to Accurately Predict Protein-Binding Peptides","display_name":"Explainable Machine Learning Model to Accurately Predict Protein-Binding Peptides","publication_year":2024,"publication_date":"2024-09-12","ids":{"openalex":"https://openalex.org/W4402492992","doi":"https://doi.org/10.3390/a17090409"},"language":"en","primary_location":{"id":"doi:10.3390/a17090409","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a17090409","pdf_url":"https://www.mdpi.com/1999-4893/17/9/409/pdf?version=1726129574","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1999-4893/17/9/409/pdf?version=1726129574","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011813122","display_name":"Sayed Mehedi Azim","orcid":"https://orcid.org/0000-0001-9080-7307"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sayed Mehedi Azim","raw_affiliation_strings":["Center for Computational and Integrative Biology, Rutgers University, Camden, NJ 08102, USA"],"affiliations":[{"raw_affiliation_string":"Center for Computational and Integrative Biology, Rutgers University, Camden, NJ 08102, USA","institution_ids":["https://openalex.org/I102322142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107163474","display_name":"Aravind Balasubramanyam","orcid":null},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aravind Balasubramanyam","raw_affiliation_strings":["Department of Computer Science, Rutgers University, Camden, NJ 08102, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Rutgers University, Camden, NJ 08102, USA","institution_ids":["https://openalex.org/I102322142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013969000","display_name":"Sheikh Rabiul Islam","orcid":"https://orcid.org/0000-0001-9610-0230"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sheikh Rabiul Islam","raw_affiliation_strings":["Department of Chemistry, Rutgers University, Camden, NJ 08102, USA","Department of Computer Science, Rutgers University, Camden, NJ 08102, USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Rutgers University, Camden, NJ 08102, USA","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Department of Computer Science, Rutgers University, Camden, NJ 08102, USA","institution_ids":["https://openalex.org/I102322142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008664962","display_name":"Jinglin Fu","orcid":"https://orcid.org/0000-0002-0814-0089"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jinglin Fu","raw_affiliation_strings":["Center for Computational and Integrative Biology, Rutgers University, Camden, NJ 08102, USA","Department of Chemistry, Rutgers University, Camden, NJ 08102, USA"],"affiliations":[{"raw_affiliation_string":"Center for Computational and Integrative Biology, Rutgers University, Camden, NJ 08102, USA","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Department of Chemistry, Rutgers University, Camden, NJ 08102, USA","institution_ids":["https://openalex.org/I102322142"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068034214","display_name":"Abdollah Dehzangi","orcid":"https://orcid.org/0000-0001-8577-0271"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Iman Dehzangi","raw_affiliation_strings":["Center for Computational and Integrative Biology, Rutgers University, Camden, NJ 08102, USA","Department of Computer Science, Rutgers University, Camden, NJ 08102, USA"],"affiliations":[{"raw_affiliation_string":"Center for Computational and Integrative Biology, Rutgers University, Camden, NJ 08102, USA","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Department of Computer Science, Rutgers University, Camden, NJ 08102, USA","institution_ids":["https://openalex.org/I102322142"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5068034214"],"corresponding_institution_ids":["https://openalex.org/I102322142"],"apc_list":{"value":1400,"currency":"CHF","value_usd":1515},"apc_paid":{"value":1400,"currency":"CHF","value_usd":1515},"fwci":0.9747,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.75417875,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"17","issue":"9","first_page":"409","last_page":"409"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.7602571249008179},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6988786458969116},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6895526647567749},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6878044605255127},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4891977310180664},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.4393860101699829},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.41631966829299927},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.20555070042610168},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.14223948121070862},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1300126016139984}],"concepts":[{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.7602571249008179},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6988786458969116},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6895526647567749},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6878044605255127},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4891977310180664},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.4393860101699829},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.41631966829299927},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.20555070042610168},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.14223948121070862},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1300126016139984},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.3390/a17090409","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a17090409","pdf_url":"https://www.mdpi.com/1999-4893/17/9/409/pdf?version=1726129574","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:ded93328e8184fa4b3edc91f08c03528","is_oa":true,"landing_page_url":"https://doaj.org/article/ded93328e8184fa4b3edc91f08c03528","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms, Vol 17, Iss 9, p 409 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3390/a17090409","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a17090409","pdf_url":"https://www.mdpi.com/1999-4893/17/9/409/pdf?version=1726129574","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4402492992.pdf"},"referenced_works_count":59,"referenced_works":["https://openalex.org/W1596947964","https://openalex.org/W1678356000","https://openalex.org/W1967299846","https://openalex.org/W1990874746","https://openalex.org/W1995089537","https://openalex.org/W2008876346","https://openalex.org/W2021016410","https://openalex.org/W2028493269","https://openalex.org/W2038562976","https://openalex.org/W2046813714","https://openalex.org/W2048072440","https://openalex.org/W2049862836","https://openalex.org/W2051583813","https://openalex.org/W2063915956","https://openalex.org/W2070360032","https://openalex.org/W2073415723","https://openalex.org/W2092358369","https://openalex.org/W2102284736","https://openalex.org/W2153187042","https://openalex.org/W2153762892","https://openalex.org/W2167807610","https://openalex.org/W2170672962","https://openalex.org/W2258180218","https://openalex.org/W2282821441","https://openalex.org/W2540069603","https://openalex.org/W2609155498","https://openalex.org/W2911964244","https://openalex.org/W2936599975","https://openalex.org/W2950681488","https://openalex.org/W2962862931","https://openalex.org/W3011641611","https://openalex.org/W3016691329","https://openalex.org/W3099466918","https://openalex.org/W3125482371","https://openalex.org/W3183967699","https://openalex.org/W4212946592","https://openalex.org/W4225983992","https://openalex.org/W4239510810","https://openalex.org/W4281294164","https://openalex.org/W4281742422","https://openalex.org/W4295009443","https://openalex.org/W4298325713","https://openalex.org/W4308370073","https://openalex.org/W4311364193","https://openalex.org/W4320495200","https://openalex.org/W4376128352","https://openalex.org/W4381570667","https://openalex.org/W4386475504","https://openalex.org/W4387906121","https://openalex.org/W4388067722","https://openalex.org/W4389085025","https://openalex.org/W4390531921","https://openalex.org/W4391215602","https://openalex.org/W4392562486","https://openalex.org/W4393202365","https://openalex.org/W4394807763","https://openalex.org/W4399388653","https://openalex.org/W4400231882","https://openalex.org/W6737947904"],"related_works":["https://openalex.org/W2090763504","https://openalex.org/W148178222","https://openalex.org/W2104657898","https://openalex.org/W1948992892","https://openalex.org/W1886884218","https://openalex.org/W1910826599","https://openalex.org/W2012353789","https://openalex.org/W2530420969","https://openalex.org/W2389700813","https://openalex.org/W2355463992"],"abstract_inverted_index":{"Enzymes":[0],"play":[1],"key":[2],"roles":[3],"in":[4,37,76,141],"the":[5,82,127,135],"biological":[6],"functions":[7],"of":[8,84],"living":[9],"organisms,":[10],"which":[11],"serve":[12],"as":[13,126],"catalysts":[14],"to":[15,34,49,62,70,102],"and":[16,41,55,66,87,114,119],"regulate":[17],"biochemical":[18],"reaction":[19],"pathways.":[20],"Recent":[21],"studies":[22],"suggest":[23],"that":[24,137],"peptides":[25,52,118],"are":[26,53],"promising":[27],"molecules":[28],"for":[29,44],"modulating":[30],"enzyme":[31],"function":[32],"due":[33],"their":[35],"advantages":[36],"large":[38,86],"chemical":[39],"diversity":[40],"well-established":[42],"methods":[43],"library":[45],"synthesis.":[46],"Experimental":[47],"approaches":[48],"identify":[50],"protein-binding":[51,104,154],"time-consuming":[54],"costly.":[56],"Hence,":[57],"there":[58],"is":[59,81],"a":[60,64,78,85,95,121],"demand":[61],"develop":[63,94],"fast":[65],"accurate":[67],"computational":[68,79],"approach":[69,80,99],"tackle":[71],"this":[72,91,108,132,142],"problem.":[73],"Another":[74],"challenge":[75],"developing":[77],"lack":[83],"reliable":[88],"dataset.":[89],"In":[90],"study,":[92],"we":[93,110,138],"new":[96],"machine":[97],"learning":[98],"called":[100],"PepBind-SVM":[101,144],"predict":[103],"peptides.":[105,155],"To":[106],"build":[107],"model,":[109],"extract":[111],"different":[112],"sequential":[113],"physicochemical":[115],"features":[116],"from":[117],"use":[120],"Support":[122],"Vector":[123],"Machine":[124],"(SVM)":[125],"classification":[128],"technique.":[129],"We":[130],"train":[131],"model":[133],"on":[134],"dataset":[136],"also":[139],"introduce":[140],"study.":[143],"achieves":[145],"92.1%":[146],"prediction":[147],"accuracy,":[148],"outperforming":[149],"other":[150],"classifiers":[151],"at":[152],"predicting":[153]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1}],"updated_date":"2026-03-11T06:11:40.159057","created_date":"2025-10-10T00:00:00"}
